mRNA_H-paniculata_contig542.12864.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig542.12864.1 vs. uniprot
Match: A0A6H5KI88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI88_9PHAE) HSP 1 Score: 56.6 bits (135), Expect = 1.480e-6 Identity = 36/86 (41.86%), Postives = 44/86 (51.16%), Query Frame = 2
Query: 134 LLLGLS-----SSANACL-IQDAQYSCTPGSTKIDLSGCGITDTNIDDLTDCFIFAGQGLVQEVILDDNELTELPYDFFDGLTALE 373
+LLGLS S+ N CL DA +DLS CGITD + DDL C AG + + L +NELT LP F LT L+
Sbjct: 8 ILLGLSTLLNTSAVNVCLDTTDAGNCQIEAGETLDLSDCGITDADFDDLASCLEAAGPEAITTLFLYENELTTLPEGIFGSLTGLQ 93 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig542.12864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig542.12864.1 >prot_H-paniculata_contig542.12864.1 ID=prot_H-paniculata_contig542.12864.1|Name=mRNA_H-paniculata_contig542.12864.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=225bp MMRVACPLALLLGLSSSANACLIQDAQYSCTPGSTKIDLSGCGITDTNIDback to top mRNA from alignment at H-paniculata_contig542:18690..25872+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig542.12864.1 ID=mRNA_H-paniculata_contig542.12864.1|Name=mRNA_H-paniculata_contig542.12864.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7183bp|location=Sequence derived from alignment at H-paniculata_contig542:18690..25872+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig542:18690..25872+ >mRNA_H-paniculata_contig542.12864.1 ID=mRNA_H-paniculata_contig542.12864.1|Name=mRNA_H-paniculata_contig542.12864.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1350bp|location=Sequence derived from alignment at H-paniculata_contig542:18690..25872+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |