prot_H-paniculata_contig5405.12844.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5405.12844.1
Unique Nameprot_H-paniculata_contig5405.12844.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length77
Homology
BLAST of mRNA_H-paniculata_contig5405.12844.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL)

HSP 1 Score: 75.5 bits (184), Expect = 3.430e-14
Identity = 42/78 (53.85%), Postives = 48/78 (61.54%), Query Frame = 0
Query:    1 MEEEWRVLVENGTWEREDLGRLPAGRKATCTKWIFKSKLNEDGTVARYKARLVAQGFK------FLKTSAPVARMSAF 72
            M++E   L ENGTW+  D   LP GRKA   KWIFK KL+EDG V RYKARLVAQGF       + +  APV R   F
Sbjct:   13 MDDEMTSLRENGTWQLTD---LPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAPVVRQVTF 87          
BLAST of mRNA_H-paniculata_contig5405.12844.1 vs. uniprot
Match: A0A075B0V5_ROZAC (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B0V5_ROZAC)

HSP 1 Score: 74.7 bits (182), Expect = 6.520e-14
Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 0
Query:    1 MEEEWRVLVENGTWEREDLGRLPAGRKATCTKWIFKSKLNEDGTVARYKARLVAQGFKFLK------TSAPVARMSA 71
            M+ E+  L+ NGTWE   L  LP  RKA  +KW+FK+K NE G V +YKARLVAQGFK +K      T +PVA++++
Sbjct:  118 MQAEYNALMSNGTWE---LMELPPDRKAIGSKWVFKTKYNERGEVEKYKARLVAQGFKQVKGVDYEETFSPVAKLNS 191          
BLAST of mRNA_H-paniculata_contig5405.12844.1 vs. uniprot
Match: A0A2K3M5H6_TRIPR (Retrotransposon protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3M5H6_TRIPR)

HSP 1 Score: 73.9 bits (180), Expect = 1.190e-13
Identity = 38/75 (50.67%), Postives = 51/75 (68.00%), Query Frame = 0
Query:    1 MEEEWRVLVENGTWEREDLGRLPAGRKATCTKWIFKSKLNEDGTVARYKARLVAQGFK------FLKTSAPVARM 69
            M EE R +V+N TW+  D   LP G++A   KW++K+K NEDG+V +YKARLVA+G+       F +T APVARM
Sbjct:    1 MNEEMRSIVKNRTWQLVD---LPTGKEAIGLKWVYKTKYNEDGSVQKYKARLVAKGYSQQPGVDFNETFAPVARM 72          
BLAST of mRNA_H-paniculata_contig5405.12844.1 vs. uniprot
Match: A0A5D3DP15_CUCME (Copia-like protein n=3 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DP15_CUCME)

HSP 1 Score: 73.6 bits (179), Expect = 1.680e-13
Identity = 38/78 (48.72%), Postives = 49/78 (62.82%), Query Frame = 0
Query:    1 MEEEWRVLVENGTWEREDLGRLPAGRKATCTKWIFKSKLNEDGTVARYKARLVAQGFK------FLKTSAPVARMSAF 72
            M EE + L +N TW   D+  LP G+K    KW++K K N DGTV RYKARLVA+GF       + +T APVA+M+ F
Sbjct:  598 MNEELKALEQNNTW---DMVELPKGKKPVGCKWVYKIKYNSDGTVERYKARLVAKGFTQTYGIDYQETFAPVAKMNTF 672          
BLAST of mRNA_H-paniculata_contig5405.12844.1 vs. uniprot
Match: A0A2N9GXG4_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GXG4_FAGSY)

HSP 1 Score: 72.4 bits (176), Expect = 4.300e-13
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 0
Query:    1 MEEEWRVLVENGTWEREDLGRLPAGRKATCTKWIFKSKLNEDGTVARYKARLVAQGFK------FLKTSAPVARMSA 71
            M+EE+  L++ GTW   DL  LPAG+ A   KW++K K   DGTV RYKARLVA+GF       + +T APVAR+S+
Sbjct:  563 MKEEFDALLKTGTW---DLVDLPAGKSAIGCKWVYKIKTRSDGTVDRYKARLVAKGFTQEYGIDYEETFAPVARLSS 636          
BLAST of mRNA_H-paniculata_contig5405.12844.1 vs. uniprot
Match: A0A2N9G901_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9G901_FAGSY)

HSP 1 Score: 72.4 bits (176), Expect = 4.320e-13
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 0
Query:    1 MEEEWRVLVENGTWEREDLGRLPAGRKATCTKWIFKSKLNEDGTVARYKARLVAQGFK------FLKTSAPVARMSA 71
            M+EE+  L++ GTW   DL  LPAG+ A   KW++K K   DGTV RYKARLVA+GF       + +T APVAR+S+
Sbjct:  809 MKEEFDALLKTGTW---DLVDLPAGKSAIGCKWVYKIKTRSDGTVDRYKARLVAKGFTQEYGIDYEETFAPVARLSS 882          
BLAST of mRNA_H-paniculata_contig5405.12844.1 vs. uniprot
Match: A0A6D2J305_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2J305_9BRAS)

HSP 1 Score: 67.8 bits (164), Expect = 5.730e-13
Identity = 40/82 (48.78%), Postives = 47/82 (57.32%), Query Frame = 0
Query:    1 MEEEWRVLVENGTWEREDLGRLPAGRKATCTKWIFKSKLNEDGTVARYKARLVAQGFKFLK------TSAPVARMSAFTYCF 76
            M  E   L EN TW  ED   LP G++A   KW++K K N DGT+ RYKARLVA G K ++      T APVARM     CF
Sbjct:    1 MGSEVEALEENNTWTLED---LPPGKRAIGCKWVYKIKYNADGTIERYKARLVALGNKQIEGEDYGETFAPVARMGT-VVCF 78          
BLAST of mRNA_H-paniculata_contig5405.12844.1 vs. uniprot
Match: A0A2N9GAS0_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GAS0_FAGSY)

HSP 1 Score: 71.6 bits (174), Expect = 7.930e-13
Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 0
Query:    1 MEEEWRVLVENGTWEREDLGRLPAGRKATCTKWIFKSKLNEDGTVARYKARLVAQGFK------FLKTSAPVARMSA 71
            M+EE   L++ GTW   DL  LPAG+ A   KW++K K   DGTV RYKARLVA+GF       + +T APVAR+S+
Sbjct:  272 MKEELDALLKTGTW---DLVDLPAGKSAIGCKWVYKIKTRSDGTVDRYKARLVAKGFTQEYGIDYKETFAPVARLSS 345          
BLAST of mRNA_H-paniculata_contig5405.12844.1 vs. uniprot
Match: A0A2N9EXK8_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EXK8_FAGSY)

HSP 1 Score: 71.6 bits (174), Expect = 8.030e-13
Identity = 40/77 (51.95%), Postives = 49/77 (63.64%), Query Frame = 0
Query:    1 MEEEWRVLVENGTWEREDLGRLPAGRKATCTKWIFKSKLNEDGTVARYKARLVAQGFK------FLKTSAPVARMSA 71
            M+EE   L++ GTW   DL  LPAG  A   KW+FK K   DGTV RYKARLVA+GF       + +T APVAR+S+
Sbjct:  602 MKEELDALLKTGTW---DLVDLPAGNSAIGCKWVFKIKTRSDGTVDRYKARLVAKGFTQEYGIDYEETFAPVARLSS 675          
BLAST of mRNA_H-paniculata_contig5405.12844.1 vs. uniprot
Match: A0A2N9FGF7_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FGF7_FAGSY)

HSP 1 Score: 71.6 bits (174), Expect = 8.030e-13
Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 0
Query:    1 MEEEWRVLVENGTWEREDLGRLPAGRKATCTKWIFKSKLNEDGTVARYKARLVAQGFK------FLKTSAPVARMSA 71
            M+EE   L++ GTW   DL  LPAG+ A   KW++K K   DGTV RYKARLVA+GF       + +T APVAR+S+
Sbjct:  656 MKEELDALLKTGTW---DLVDLPAGKSAIGCKWVYKIKTRSDGTVDRYKARLVAKGFTQEYGIDYKETFAPVARLSS 729          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5405.12844.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A182GIT5_AEDAL3.430e-1453.85Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A075B0V5_ROZAC6.520e-1450.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2K3M5H6_TRIPR1.190e-1350.67Retrotransposon protein n=1 Tax=Trifolium pratense... [more]
A0A5D3DP15_CUCME1.680e-1348.72Copia-like protein n=3 Tax=Cucumis melo var. makuw... [more]
A0A2N9GXG4_FAGSY4.300e-1350.65Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9G901_FAGSY4.320e-1350.65Integrase catalytic domain-containing protein n=1 ... [more]
A0A6D2J305_9BRAS5.730e-1348.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9GAS0_FAGSY7.930e-1350.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9EXK8_FAGSY8.030e-1351.95Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9FGF7_FAGSY8.030e-1350.65Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 19..71
e-value: 6.6E-10
score: 39.0
NoneNo IPR availablePANTHERPTHR11439:SF264coord: 1..69
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5405contigH-paniculata_contig5405:4462..4709 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5405.12844.1mRNA_H-paniculata_contig5405.12844.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5405 4426..4911 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5405.12844.1 ID=prot_H-paniculata_contig5405.12844.1|Name=mRNA_H-paniculata_contig5405.12844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
MEEEWRVLVENGTWEREDLGRLPAGRKATCTKWIFKSKLNEDGTVARYKA
RLVAQGFKFLKTSAPVARMSAFTYCF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like