mRNA_H-paniculata_contig5405.12844.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5405.12844.1
Unique NamemRNA_H-paniculata_contig5405.12844.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5405.12844.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL)

HSP 1 Score: 90.9 bits (224), Expect = 2.210e-18
Identity = 48/90 (53.33%), Postives = 56/90 (62.22%), Query Frame = 1
Query:    1 LNGPEAGTWRATMEEEWRVLVENGTWEREDLGRLPAGRKATCTKWIFKSKLNEDGTVARYKARLVAQGFK------FLKTSAPVARMSAF 252
            + GPEA  W+A M++E   L ENGTW+  D   LP GRKA   KWIFK KL+EDG V RYKARLVAQGF       + +  APV R   F
Sbjct:    1 MKGPEAELWKAAMDDEMTSLRENGTWQLTD---LPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAPVVRQVTF 87          
BLAST of mRNA_H-paniculata_contig5405.12844.1 vs. uniprot
Match: A0A075B0V5_ROZAC (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B0V5_ROZAC)

HSP 1 Score: 81.6 bits (200), Expect = 4.140e-15
Identity = 42/89 (47.19%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 LNGPEAGTWRATMEEEWRVLVENGTWEREDLGRLPAGRKATCTKWIFKSKLNEDGTVARYKARLVAQGFKFLK------TSAPVARMSA 249
            +N      WR  M+ E+  L+ NGTWE   L  LP  RKA  +KW+FK+K NE G V +YKARLVAQGFK +K      T +PVA++++
Sbjct:  106 INSDLENEWRKAMQAEYNALMSNGTWE---LMELPPDRKAIGSKWVFKTKYNERGEVEKYKARLVAQGFKQVKGVDYEETFSPVAKLNS 191          
BLAST of mRNA_H-paniculata_contig5405.12844.1 vs. uniprot
Match: A0A1W7R664_AEDAL (Putative retrovirus-related pol polyprotein from transposon tnt (Fragment) n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A1W7R664_AEDAL)

HSP 1 Score: 79.7 bits (195), Expect = 2.010e-14
Identity = 43/86 (50.00%), Postives = 54/86 (62.79%), Query Frame = 1
Query:    1 LNGPEAGTWRATMEEEWRVLVENGTWEREDLGRLPAGRKATCTKWIFKSKLNEDGTVARYKARLVAQGFK------FLKTSAPVAR 240
            L G ++  W   M++E+R LVENGTWE   L  LP  RKA   KW+FKSK +E G + R+KARLVAQGF       F +  APVA+
Sbjct:  603 LKGAKSQEWMDAMDDEYRSLVENGTWE---LVELPPNRKAIGCKWLFKSKRDEKGDIVRHKARLVAQGFTQKYGVDFDEVFAPVAK 685          
BLAST of mRNA_H-paniculata_contig5405.12844.1 vs. uniprot
Match: A0A1W7R6H7_AEDAL (Putative pol polyprotein (Fragment) n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A1W7R6H7_AEDAL)

HSP 1 Score: 79.3 bits (194), Expect = 2.860e-14
Identity = 44/90 (48.89%), Postives = 53/90 (58.89%), Query Frame = 1
Query:    1 LNGPEAGTWRATMEEEWRVLVENGTWEREDLGRLPAGRKATCTKWIFKSKLNEDGTVARYKARLVAQGFK------FLKTSAPVARMSAF 252
            + GPE   W++ ++EE     EN TW   DL  LP GRK    KWIFK KL+E G VARYKARLVAQGF       + +  APV +M  F
Sbjct:  795 VEGPECELWKSAIKEELMSHQENKTW---DLVPLPPGRKTVGCKWIFKRKLDEHGNVARYKARLVAQGFTQKFGTDYDEVYAPVVKMVTF 881          
BLAST of mRNA_H-paniculata_contig5405.12844.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A)

HSP 1 Score: 74.7 bits (182), Expect = 4.580e-14
Identity = 42/115 (36.52%), Postives = 60/115 (52.17%), Query Frame = 1
Query:    1 LNGPEAGTWRATMEEEWRVLVENGTWEREDLGRLPAGRKATCTKWIFKSKLNEDGTVARYKARLVAQGFK------FLKTSAPVARMSAFTYCF*PGRRA*FRIRRHGRRCGVFE 327
            L  P+A  W+  MEEE   L  N TW   D+   P GRK    KW+FK KLN+DG V RYKARLVA+G+       + +T +PV +  +            +++ + G  C +F+
Sbjct:   38 LTSPDAEKWKLAMEEELENLKRNETW---DIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKETFSPVIKTKSIRTLLAFSVEQDWQVHQLGYYCSLFK 149          
BLAST of mRNA_H-paniculata_contig5405.12844.1 vs. uniprot
Match: A0A067T6Q3_GALM3 (Uncharacterized protein (Fragment) n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067T6Q3_GALM3)

HSP 1 Score: 78.2 bits (191), Expect = 7.260e-14
Identity = 35/69 (50.72%), Postives = 50/69 (72.46%), Query Frame = 1
Query:    1 LNGPEAGTWRATMEEEWRVLVENGTWEREDLGRLPAGRKATCTKWIFKSKLNEDGTVARYKARLVAQGF 207
            L  PEA  W+  M+EE+ +L++ GTW+   +G LPA RKA  ++W+F+ K +E GTV ++KARLVAQGF
Sbjct:  866 LASPEAKEWKDAMDEEYNILLKMGTWK---MGDLPADRKAIGSRWVFRKKKDEHGTVIKFKARLVAQGF 931          
BLAST of mRNA_H-paniculata_contig5405.12844.1 vs. uniprot
Match: A0A194RJV9_PAPMA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Papilio machaon TaxID=76193 RepID=A0A194RJV9_PAPMA)

HSP 1 Score: 77.4 bits (189), Expect = 1.340e-13
Identity = 38/94 (40.43%), Postives = 56/94 (59.57%), Query Frame = 1
Query:    1 LNGPEAGTWRATMEEEWRVLVENGTWEREDLGRLPAGRKATCTKWIFKSKLNEDGTVARYKARLVAQG------FKFLKTSAPVARMSAFTYCF 264
            L+GP A  W+  M+EE++ L+EN TWE   L  LPA + A   KW++K K NE+G   +YKARLV +G        + ++ +PV R+ +  Y F
Sbjct:  755 LSGPNARQWKEAMDEEYKSLLENNTWE---LTTLPANKHAIPCKWVYKVKKNENGETVKYKARLVIKGCSQRPGIDYTESFSPVVRLVSLRYLF 845          
BLAST of mRNA_H-paniculata_contig5405.12844.1 vs. uniprot
Match: UPI0018960FA8 (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Jatropha curcas TaxID=180498 RepID=UPI0018960FA8)

HSP 1 Score: 72.8 bits (177), Expect = 1.830e-13
Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 1
Query:   25 WRATMEEEWRVLVENGTWEREDLGRLPAGRKATCTKWIFKSKLNEDGTVARYKARLVAQGFK------FLKTSAPVARM 243
            W +TMEEE R++ +N TWE  D    P  +KA   KW++++KLN DG++ ++KARLV +G+       F KT APVAR+
Sbjct:   15 WVSTMEEELRMIEKNDTWELVD---RPTHKKAIGVKWVYRTKLNSDGSINKHKARLVVKGYAQMCGVDFSKTFAPVARL 90          
BLAST of mRNA_H-paniculata_contig5405.12844.1 vs. uniprot
Match: UPI0019549DCA (uncharacterized protein LOC120413002 n=1 Tax=Culex pipiens pallens TaxID=42434 RepID=UPI0019549DCA)

HSP 1 Score: 76.6 bits (187), Expect = 2.500e-13
Identity = 38/90 (42.22%), Postives = 55/90 (61.11%), Query Frame = 1
Query:   13 EAGTWRATMEEEWRVLVENGTWEREDLGRLPAGRKATCTKWIFKSKLNEDGTVARYKARLVAQGFK------FLKTSAPVARMSAFTYCF 264
            +A  W+  M++E+  L+ NGTWE  D   LP GR A   KW++K+KL+ +G + RYKARLV +G+       + +T APV R S+  Y F
Sbjct:  887 DAEHWKQAMKDEYEALISNGTWELCD---LPEGRSAIKCKWVYKTKLDVNGDIDRYKARLVIKGYSQRKGVDYEETYAPVVRYSSLRYLF 973          
BLAST of mRNA_H-paniculata_contig5405.12844.1 vs. uniprot
Match: UPI001F12C045 (uncharacterized protein LOC124543428 n=1 Tax=Vanessa cardui TaxID=171605 RepID=UPI001F12C045)

HSP 1 Score: 76.3 bits (186), Expect = 3.140e-13
Identity = 35/92 (38.04%), Postives = 57/92 (61.96%), Query Frame = 1
Query:    1 LNGPEAGTWRATMEEEWRVLVENGTWEREDLGRLPAGRKATCTKWIFKSKLNEDGTVARYKARLVAQG------FKFLKTSAPVARMSAFTY 258
            L+GP A  W+  M+EE++ L+EN TWE   +  LP+ ++A   KW++K K NE+G   +YKARLV +G        + ++ +PV R+++  Y
Sbjct:  539 LSGPNAKQWKEAMDEEYKSLIENNTWE---ITTLPSDKRAIPCKWVYKVKRNENGETVKYKARLVIKGCSQRPGIDYTESFSPVVRLTSLRY 627          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5405.12844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A182GIT5_AEDAL2.210e-1853.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A075B0V5_ROZAC4.140e-1547.19Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1W7R664_AEDAL2.010e-1450.00Putative retrovirus-related pol polyprotein from t... [more]
A0A1W7R6H7_AEDAL2.860e-1448.89Putative pol polyprotein (Fragment) n=1 Tax=Aedes ... [more]
UPI0015A81C6A4.580e-1436.52uncharacterized mitochondrial protein AtMg00820-li... [more]
A0A067T6Q3_GALM37.260e-1450.72Uncharacterized protein (Fragment) n=1 Tax=Galerin... [more]
A0A194RJV9_PAPMA1.340e-1340.43Retrovirus-related Pol polyprotein from transposon... [more]
UPI0018960FA81.830e-1345.57uncharacterized mitochondrial protein AtMg00820-li... [more]
UPI0019549DCA2.500e-1342.22uncharacterized protein LOC120413002 n=1 Tax=Culex... [more]
UPI001F12C0453.140e-1338.04uncharacterized protein LOC124543428 n=1 Tax=Vanes... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5405contigH-paniculata_contig5405:4426..4911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score67.4
Seed ortholog evalue3.3e-09
Seed eggNOG ortholog400682.PAC_15703055
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3ACW4@33154,3BVPH@33208,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons2
Model size469
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5405.12844.1prot_H-paniculata_contig5405.12844.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5405 4462..4709 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930555.1756067-UTR-H-paniculata_contig5405:4425..44611622930555.1756067-UTR-H-paniculata_contig5405:4425..4461Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5405 4426..4461 +
1691481346.1517692-UTR-H-paniculata_contig5405:4425..44611691481346.1517692-UTR-H-paniculata_contig5405:4425..4461Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5405 4426..4461 +
1622930555.2251909-UTR-H-paniculata_contig5405:4709..49111622930555.2251909-UTR-H-paniculata_contig5405:4709..4911Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5405 4710..4911 +
1691481346.1897895-UTR-H-paniculata_contig5405:4709..49111691481346.1897895-UTR-H-paniculata_contig5405:4709..4911Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5405 4710..4911 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930555.1990907-CDS-H-paniculata_contig5405:4461..46341622930555.1990907-CDS-H-paniculata_contig5405:4461..4634Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5405 4462..4634 +
1691481346.1633034-CDS-H-paniculata_contig5405:4461..46341691481346.1633034-CDS-H-paniculata_contig5405:4461..4634Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5405 4462..4634 +
1622930555.2139206-CDS-H-paniculata_contig5405:4651..47091622930555.2139206-CDS-H-paniculata_contig5405:4651..4709Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5405 4652..4709 +
1691481346.1741827-CDS-H-paniculata_contig5405:4651..47091691481346.1741827-CDS-H-paniculata_contig5405:4651..4709Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5405 4652..4709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5405.12844.1

>prot_H-paniculata_contig5405.12844.1 ID=prot_H-paniculata_contig5405.12844.1|Name=mRNA_H-paniculata_contig5405.12844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
MEEEWRVLVENGTWEREDLGRLPAGRKATCTKWIFKSKLNEDGTVARYKA
RLVAQGFKFLKTSAPVARMSAFTYCF*
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mRNA from alignment at H-paniculata_contig5405:4426..4911+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5405.12844.1 ID=mRNA_H-paniculata_contig5405.12844.1|Name=mRNA_H-paniculata_contig5405.12844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=486bp|location=Sequence derived from alignment at H-paniculata_contig5405:4426..4911+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTAAATGGTCCAGAGGCAGGAACATGGCGCGCGACAATGGAGGAGGAATG GAGGGTGTTGGTGGAAAATGGAACATGGGAAAGGGAAGACCTGGGGAGGT TACCGGCAGGGCGGAAGGCGACTTGTACGAAATGGATTTTCAAGTCGAAA CTGAACGAGGACGGCACCGTGGCACGCTACAAAGCGCGATTGGTGGCTCA AGGCTTTAAGTAGGTGGAAGGTGAAGATTTTTAAAAACCAGTGCTCCCGT AGCTCGCATGTCGGCTTTTACGTACTGTTTCTAGCCGGGTCGCCGAGCAT AATTTCGAATTAGAAGGCATGGACGTAGATGCGGTGTATTTGAATGCCCC TGTAGAAGAAGAGCTGTTTGTTAAACTACCCCCGGAGTTTTCCCCTCTCT CCCGAGATATACCGTTTGTGCGCTGCCTGCGTAAAAGCCTGTACGGCCTC AAGCAGAGCGGTCGAAACTGGAGTTACACTCTTGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig5405:4426..4911+

>mRNA_H-paniculata_contig5405.12844.1 ID=mRNA_H-paniculata_contig5405.12844.1|Name=mRNA_H-paniculata_contig5405.12844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig5405:4426..4911+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGAGGAATGGAGGGTGTTGGTGGAAAATGGAACATGGGAAAGGGA
AGACCTGGGGAGGTTACCGGCAGGGCGGAAGGCGACTTGTACGAAATGGA
TTTTCAAGTCGAAACTGAACGAGGACGGCACCGTGGCACGCTACAAAGCG
CGATTGGTGGCTCAAGGCTTTAAATGGAGGAGGAATGGAGGGTGTTGGTG
GAAAATGGAACATGGGAAAGGGAAGACCTGGGGAGGTTACCGGCAGGGCG
GAAGGCGACTTGTACGAAATGGATTTTCAAGTCGAAACTGAACGAGGACG
GCACCGTGGCACGCTACAAAGCGCGATTGGTGGCTCAAGGCTTTAAATTT
TTAAAAACCAGTGCTCCCGTAGCTCGCATGTCGGCTTTTACGTACTGTTT
CTAGATTTTTAAAAACCAGTGCTCCCGTAGCTCGCATGTCGGCTTTTACG
TACTGTTTCTAG
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