mRNA_H-paniculata_contig5405.12844.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig5405.12844.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL) HSP 1 Score: 90.9 bits (224), Expect = 2.210e-18 Identity = 48/90 (53.33%), Postives = 56/90 (62.22%), Query Frame = 1
Query: 1 LNGPEAGTWRATMEEEWRVLVENGTWEREDLGRLPAGRKATCTKWIFKSKLNEDGTVARYKARLVAQGFK------FLKTSAPVARMSAF 252
+ GPEA W+A M++E L ENGTW+ D LP GRKA KWIFK KL+EDG V RYKARLVAQGF + + APV R F
Sbjct: 1 MKGPEAELWKAAMDDEMTSLRENGTWQLTD---LPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAPVVRQVTF 87
BLAST of mRNA_H-paniculata_contig5405.12844.1 vs. uniprot
Match: A0A075B0V5_ROZAC (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B0V5_ROZAC) HSP 1 Score: 81.6 bits (200), Expect = 4.140e-15 Identity = 42/89 (47.19%), Postives = 56/89 (62.92%), Query Frame = 1
Query: 1 LNGPEAGTWRATMEEEWRVLVENGTWEREDLGRLPAGRKATCTKWIFKSKLNEDGTVARYKARLVAQGFKFLK------TSAPVARMSA 249
+N WR M+ E+ L+ NGTWE L LP RKA +KW+FK+K NE G V +YKARLVAQGFK +K T +PVA++++
Sbjct: 106 INSDLENEWRKAMQAEYNALMSNGTWE---LMELPPDRKAIGSKWVFKTKYNERGEVEKYKARLVAQGFKQVKGVDYEETFSPVAKLNS 191
BLAST of mRNA_H-paniculata_contig5405.12844.1 vs. uniprot
Match: A0A1W7R664_AEDAL (Putative retrovirus-related pol polyprotein from transposon tnt (Fragment) n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A1W7R664_AEDAL) HSP 1 Score: 79.7 bits (195), Expect = 2.010e-14 Identity = 43/86 (50.00%), Postives = 54/86 (62.79%), Query Frame = 1
Query: 1 LNGPEAGTWRATMEEEWRVLVENGTWEREDLGRLPAGRKATCTKWIFKSKLNEDGTVARYKARLVAQGFK------FLKTSAPVAR 240
L G ++ W M++E+R LVENGTWE L LP RKA KW+FKSK +E G + R+KARLVAQGF F + APVA+
Sbjct: 603 LKGAKSQEWMDAMDDEYRSLVENGTWE---LVELPPNRKAIGCKWLFKSKRDEKGDIVRHKARLVAQGFTQKYGVDFDEVFAPVAK 685
BLAST of mRNA_H-paniculata_contig5405.12844.1 vs. uniprot
Match: A0A1W7R6H7_AEDAL (Putative pol polyprotein (Fragment) n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A1W7R6H7_AEDAL) HSP 1 Score: 79.3 bits (194), Expect = 2.860e-14 Identity = 44/90 (48.89%), Postives = 53/90 (58.89%), Query Frame = 1
Query: 1 LNGPEAGTWRATMEEEWRVLVENGTWEREDLGRLPAGRKATCTKWIFKSKLNEDGTVARYKARLVAQGFK------FLKTSAPVARMSAF 252
+ GPE W++ ++EE EN TW DL LP GRK KWIFK KL+E G VARYKARLVAQGF + + APV +M F
Sbjct: 795 VEGPECELWKSAIKEELMSHQENKTW---DLVPLPPGRKTVGCKWIFKRKLDEHGNVARYKARLVAQGFTQKFGTDYDEVYAPVVKMVTF 881
BLAST of mRNA_H-paniculata_contig5405.12844.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A) HSP 1 Score: 74.7 bits (182), Expect = 4.580e-14 Identity = 42/115 (36.52%), Postives = 60/115 (52.17%), Query Frame = 1
Query: 1 LNGPEAGTWRATMEEEWRVLVENGTWEREDLGRLPAGRKATCTKWIFKSKLNEDGTVARYKARLVAQGFK------FLKTSAPVARMSAFTYCF*PGRRA*FRIRRHGRRCGVFE 327
L P+A W+ MEEE L N TW D+ P GRK KW+FK KLN+DG V RYKARLVA+G+ + +T +PV + + +++ + G C +F+
Sbjct: 38 LTSPDAEKWKLAMEEELENLKRNETW---DIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKETFSPVIKTKSIRTLLAFSVEQDWQVHQLGYYCSLFK 149
BLAST of mRNA_H-paniculata_contig5405.12844.1 vs. uniprot
Match: A0A067T6Q3_GALM3 (Uncharacterized protein (Fragment) n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067T6Q3_GALM3) HSP 1 Score: 78.2 bits (191), Expect = 7.260e-14 Identity = 35/69 (50.72%), Postives = 50/69 (72.46%), Query Frame = 1
Query: 1 LNGPEAGTWRATMEEEWRVLVENGTWEREDLGRLPAGRKATCTKWIFKSKLNEDGTVARYKARLVAQGF 207
L PEA W+ M+EE+ +L++ GTW+ +G LPA RKA ++W+F+ K +E GTV ++KARLVAQGF
Sbjct: 866 LASPEAKEWKDAMDEEYNILLKMGTWK---MGDLPADRKAIGSRWVFRKKKDEHGTVIKFKARLVAQGF 931
BLAST of mRNA_H-paniculata_contig5405.12844.1 vs. uniprot
Match: A0A194RJV9_PAPMA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Papilio machaon TaxID=76193 RepID=A0A194RJV9_PAPMA) HSP 1 Score: 77.4 bits (189), Expect = 1.340e-13 Identity = 38/94 (40.43%), Postives = 56/94 (59.57%), Query Frame = 1
Query: 1 LNGPEAGTWRATMEEEWRVLVENGTWEREDLGRLPAGRKATCTKWIFKSKLNEDGTVARYKARLVAQG------FKFLKTSAPVARMSAFTYCF 264
L+GP A W+ M+EE++ L+EN TWE L LPA + A KW++K K NE+G +YKARLV +G + ++ +PV R+ + Y F
Sbjct: 755 LSGPNARQWKEAMDEEYKSLLENNTWE---LTTLPANKHAIPCKWVYKVKKNENGETVKYKARLVIKGCSQRPGIDYTESFSPVVRLVSLRYLF 845
BLAST of mRNA_H-paniculata_contig5405.12844.1 vs. uniprot
Match: UPI0018960FA8 (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Jatropha curcas TaxID=180498 RepID=UPI0018960FA8) HSP 1 Score: 72.8 bits (177), Expect = 1.830e-13 Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 1
Query: 25 WRATMEEEWRVLVENGTWEREDLGRLPAGRKATCTKWIFKSKLNEDGTVARYKARLVAQGFK------FLKTSAPVARM 243
W +TMEEE R++ +N TWE D P +KA KW++++KLN DG++ ++KARLV +G+ F KT APVAR+
Sbjct: 15 WVSTMEEELRMIEKNDTWELVD---RPTHKKAIGVKWVYRTKLNSDGSINKHKARLVVKGYAQMCGVDFSKTFAPVARL 90
BLAST of mRNA_H-paniculata_contig5405.12844.1 vs. uniprot
Match: UPI0019549DCA (uncharacterized protein LOC120413002 n=1 Tax=Culex pipiens pallens TaxID=42434 RepID=UPI0019549DCA) HSP 1 Score: 76.6 bits (187), Expect = 2.500e-13 Identity = 38/90 (42.22%), Postives = 55/90 (61.11%), Query Frame = 1
Query: 13 EAGTWRATMEEEWRVLVENGTWEREDLGRLPAGRKATCTKWIFKSKLNEDGTVARYKARLVAQGFK------FLKTSAPVARMSAFTYCF 264
+A W+ M++E+ L+ NGTWE D LP GR A KW++K+KL+ +G + RYKARLV +G+ + +T APV R S+ Y F
Sbjct: 887 DAEHWKQAMKDEYEALISNGTWELCD---LPEGRSAIKCKWVYKTKLDVNGDIDRYKARLVIKGYSQRKGVDYEETYAPVVRYSSLRYLF 973
BLAST of mRNA_H-paniculata_contig5405.12844.1 vs. uniprot
Match: UPI001F12C045 (uncharacterized protein LOC124543428 n=1 Tax=Vanessa cardui TaxID=171605 RepID=UPI001F12C045) HSP 1 Score: 76.3 bits (186), Expect = 3.140e-13 Identity = 35/92 (38.04%), Postives = 57/92 (61.96%), Query Frame = 1
Query: 1 LNGPEAGTWRATMEEEWRVLVENGTWEREDLGRLPAGRKATCTKWIFKSKLNEDGTVARYKARLVAQG------FKFLKTSAPVARMSAFTY 258
L+GP A W+ M+EE++ L+EN TWE + LP+ ++A KW++K K NE+G +YKARLV +G + ++ +PV R+++ Y
Sbjct: 539 LSGPNAKQWKEAMDEEYKSLIENNTWE---ITTLPSDKRAIPCKWVYKVKRNENGETVKYKARLVIKGCSQRPGIDYTESFSPVVRLTSLRY 627 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5405.12844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5405.12844.1 >prot_H-paniculata_contig5405.12844.1 ID=prot_H-paniculata_contig5405.12844.1|Name=mRNA_H-paniculata_contig5405.12844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp MEEEWRVLVENGTWEREDLGRLPAGRKATCTKWIFKSKLNEDGTVARYKAback to top mRNA from alignment at H-paniculata_contig5405:4426..4911+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5405.12844.1 ID=mRNA_H-paniculata_contig5405.12844.1|Name=mRNA_H-paniculata_contig5405.12844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=486bp|location=Sequence derived from alignment at H-paniculata_contig5405:4426..4911+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5405:4426..4911+ >mRNA_H-paniculata_contig5405.12844.1 ID=mRNA_H-paniculata_contig5405.12844.1|Name=mRNA_H-paniculata_contig5405.12844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig5405:4426..4911+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |