prot_H-paniculata_contig5394.12818.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5394.12818.1
Unique Nameprot_H-paniculata_contig5394.12818.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length199
Homology
BLAST of mRNA_H-paniculata_contig5394.12818.1 vs. uniprot
Match: D8LGI0_ECTSI (SFM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGI0_ECTSI)

HSP 1 Score: 244 bits (623), Expect = 2.120e-74
Identity = 144/199 (72.36%), Postives = 159/199 (79.90%), Query Frame = 0
Query:    1 MDLSEESKEAQEQHAKLLRQVEADRRARTMVVPTKPEDVALKLRELGEPVRLFSENNADIRERLKKFLAAREMSVEEVDKIRGMVVAPKPSIVPRKMQMGGAGALAGKTGEGTAAVAPRKPEVVYTPASDALLEARADMATFSFSRGQRRLLGNKRRRSSVEEASEVDRRAGETFSTMRNLAINCSQFGDTRPLSVIQV 199
            MDLSEESKEAQ++HA+LL+QVEADRRARTMVVPTK EDVA KLR+LG+PVRLFSEN ADIRERL++F+AA EM  EE +KI GMV APKPS VPRKMQMGG  A AG         A +K EVVYTPASDALLEARA +AT SF R + RL G KRRR + EE S VDRRA ETFSTM+NLAIN SQF D RPLS IQV
Sbjct:   75 MDLSEESKEAQQEHARLLKQVEADRRARTMVVPTKTEDVAKKLRQLGQPVRLFSENVADIRERLRRFIAASEMEDEEAEKIEGMV-APKPSFVPRKMQMGGEPA-AGAAXXXXXPPAAKKVEVVYTPASDALLEARAAIATMSFGRAKSRLAGAKRRRGTPEETSAVDRRAVETFSTMKNLAINSSQFADDRPLSAIQV 271          
BLAST of mRNA_H-paniculata_contig5394.12818.1 vs. uniprot
Match: A0A7S2WFU9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WFU9_9STRA)

HSP 1 Score: 133 bits (335), Expect = 3.120e-33
Identity = 86/194 (44.33%), Postives = 116/194 (59.79%), Query Frame = 0
Query:    1 MDLSEESKEAQEQHAKLLRQVEADRRARTMVVPTKPEDVALKLRELGEPVRLFSENNADIRERLKKFLAAREMSVEEVDKIRGMVVAPKPSIVPRKMQMGGAGALAGKTGEGTAAVAPRKPEVVYTPASDALLEARADMATFSFSRGQRRLLGNKRRRSSVEEASEVDRRAGETFSTMRNLAINCSQFGDTRPL 194
            ++LS  S + Q++HA LLR+VEA+RRAR++VVPT PE+V  +LR +G+PVRLF EN ADIRERL++F+A R++  +E     GM+  P     P+                     AP K   VY+ AS  L+EAR  +  +S +    R+ G KRRR S EE + VD  A ET+  MR LAI+ SQF D RPL
Sbjct:   40 LELSATSLDEQDRHAVLLRRVEAERRARSIVVPTNPEEVRQQLRSIGQPVRLFGENLADIRERLREFIARRQLDGDEAP---GMLTEPMEEDKPK---------------------APEKKADVYSEASADLVEARQRIFDYSSTHTVERMAGVKRRRESAEERARVDESAKETYKDMRALAISASQFADERPL 209          
BLAST of mRNA_H-paniculata_contig5394.12818.1 vs. uniprot
Match: A0A835YL38_9STRA (Quinon protein alcohol dehydrogenase-like superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL38_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.990e-31
Identity = 85/199 (42.71%), Postives = 117/199 (58.79%), Query Frame = 0
Query:    1 MDLSEESKEAQEQHAKLLRQVEADRRARTMVVPTKPEDVALKLRELGEPVRLFSENNADIRERLKKFLAAREMSVEEVDKIRGMVVAPKPSIVPRKMQMGGAGALAGKTGEGTAAVAPRKPEVVYTPASDALLEARADMATFSFSRGQRRLLGNKRRRSSVEEASEVDRRAGETFSTMRNLAINCSQFGDTRPLSVIQV 199
            M+LS  S+E Q++HA++LR+VEA RRARTM VPT PE+VA  LR LG+P+RLFSE  AD+RERL++ LA  ++  E    +  ++ A +P+                      AAV   K EVVYT A+  L+EAR  +A++SF+   +RL   KRRR     AS  D  A    + ++ L IN S  GD RPLS ++V
Sbjct:   52 MELSAASREEQDKHAEMLRKVEAHRRARTMAVPTLPEEVARALRRLGQPIRLFSETLADVRERLREHLAQLQLDGEGDAAVASLLAAAEPAKAA------------------AAAVEEGKAEVVYTVAAAPLIEAREVIASYSFAAAPQRLARAKRRRLDSAVASAEDAAAAAACTRLKGLVINVSAVGDERPLSAVRV 232          
BLAST of mRNA_H-paniculata_contig5394.12818.1 vs. uniprot
Match: A0A8J2SIT3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SIT3_9STRA)

HSP 1 Score: 102 bits (255), Expect = 5.550e-22
Identity = 72/198 (36.36%), Postives = 109/198 (55.05%), Query Frame = 0
Query:    2 DLSEESKEAQEQHAKLLRQVEADRRARTMVVPTKPEDVALKLRELGEPVRLFSENNADIRERLKKFLAAREMSVEEVDKIRGMVVAPK-PSIVPRKMQMGGAGALAGKTGEGTAAVAPRKPEVVYTPASDALLEARADMATFSFSRGQRRLLGNKRRRSSVEEASEVDRRAGETFSTMRNLAINCSQFGDTRPLSVIQ 198
            DL+E S++ Q +HA LLR+V+A++RAR +VVPT   +V   LR+LG PVRLF E+ AD+RERL+  LA  E+  E+ + +  ++  P    + PR                  AA   R  E VY+ AS  L+ AR  +A  +F R +RRL   +  R        ++  A  TF+ +R+LA+  SQ  D RP++ ++
Sbjct:   78 DLNETSRQDQARHAALLRRVDAEKRARRIVVPTGDNEVRAMLRKLGHPVRLFGESAADVRERLRSALARVEIEGEDRELVAALLAQPSVEELQPR------------------AASVRRGKEEVYSAASRELVGARRALAPGTFDRARRRLAEQRLHRDDAAAVDALNEAAAGTFAKLRSLALAQSQAADARPVASVR 257          
BLAST of mRNA_H-paniculata_contig5394.12818.1 vs. uniprot
Match: A0A7S3HQA0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HQA0_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.110e-21
Identity = 58/172 (33.72%), Postives = 104/172 (60.47%), Query Frame = 0
Query:   27 ARTMVVPTKPEDVALKLRELGEPVRLFSENNADIRERLKKFLAAREMSVEEVDKIRGMVVAPKPSIVPRKMQMGGAGALAGKTGEGTAAVAPRKPEVVYTPASDALLEARADMATFSFSRGQRRLLGNKRRRSSVEEASEVDRRAGETFSTMRNLAINCSQFGDTRPLSVIQ 198
            AR++ VPT   ++ L+LRELG P+ LF E++AD RERL++ +A  E+  E++DK++        +I+ +      A +  G  G         + EV Y+PA++A++ AR ++AT+SF++ Q+RL   +R R + E  +E ++   E ++  ++L +N SQ GD RP++ ++
Sbjct:    1 ARSINVPTAIPEIKLQLRELGHPITLFGEDHADRRERLREVIARLELDQEQLDKLQ--------AIINQNPLQPAAPSAPGAAGPTITTQDKVQKEVFYSPATEAMIAARKEIATYSFAKSQQRLNNTRRIRETEELENEENKAVHELYTHSKDLTLNASQVGDDRPITTVR 164          
BLAST of mRNA_H-paniculata_contig5394.12818.1 vs. uniprot
Match: B8BQI8_THAPS (Small nuclear ribonucleoprotein prp4 (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQI8_THAPS)

HSP 1 Score: 95.1 bits (235), Expect = 2.200e-19
Identity = 76/197 (38.58%), Postives = 104/197 (52.79%), Query Frame = 0
Query:    1 MDLSEESKEAQEQHAKLLRQVEADRRARTMVVPTKPEDVALKLRELGEPVRLFSENNADIRERLKKFLAAREMSVEEVDKIRGMVVAPKPSIVPRKMQMGGAGALAGKTGEGTAAVAPRKPEVVYTPASDALLEARADMATFSFSRGQRRLLGNKRRRSSVEEASEVDRRAGETFSTMRNLAINCSQFGDTRPLSVI 197
            + L+ +S  AQ +H  +L  +EA +RA TM VPT P DV   LR LGEPVR+F E+ A IR+RL+  LA  E+  EE  +  GM+V      + R M                AA      E  YT AS  L+ AR  +  FS  R + RL   +RR SS+    ++D    + + T+RNLA+  SQ+GD RPLS +
Sbjct:    3 LTLTADSLAAQNEHRSMLLDLEARKRASTMDVPTLPADVRDALRSLGEPVRMFGEDLAAIRDRLRMVLARAEVMREE--EAGGMIVQGMEDQM-RVMD---------------AAEEEEVTETTYTHASVELIHARKVICDFSLERSRHRLDVERRRHSSL--VKQLDDSCEKIYKTIRNLALEGSQYGDVRPLSAV 179          
BLAST of mRNA_H-paniculata_contig5394.12818.1 vs. uniprot
Match: A0A3M6VKG6_9STRA (SFM domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKG6_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 4.600e-18
Identity = 82/213 (38.50%), Postives = 116/213 (54.46%), Query Frame = 0
Query:    1 MDLSEESKEAQEQHAKLLRQVEADRRARTMVVPTKPEDVALKLRELGEPVRLFSENNADIRERLKKFLAAREMSVEEVDKIRGMVVAPKPSIVPRKMQMGGAGALAG--KT-GEGTAAVAP----RKPEVVYTPA-SDALLEARADMATFSFSRGQRRLLG-------NKRRRSSVEEASEVDRRAGETFSTMRNLAINCSQFGDTRPLSVIQ 198
            ++LSE S+  QE+HA LLR++EA++RAR +VVPT  E V  +LR+LGEP+ LF E  AD RERL++ L+  E+  EE   +  ++           +Q  G GA AG  KT G G  A+       + ++ Y P  +D L   RA  A FS +    R++G        +R RS  E A  VD  A E ++T   +A   SQ GD RPLS ++
Sbjct:   57 LELSESSRAVQEKHAHLLRRIEAEKRARNIVVPTIVEVVIRRLRQLGEPITLFGERPADRRERLREILSRLELEEEETGFVHQVLA---------DIQQQGFGADAGVEKTAGRGETALDNVTKLEENQLFYVPIQNDRLKNVRA--AIFSHAS---RVVGARLKRERQERNRSPEERARTVDHHAAELYTTALKMANIASQNGDVRPLSSVR 255          
BLAST of mRNA_H-paniculata_contig5394.12818.1 vs. uniprot
Match: A0A024GUH0_9STRA (SFM domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GUH0_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.550e-17
Identity = 70/200 (35.00%), Postives = 107/200 (53.50%), Query Frame = 0
Query:    1 MDLSEESKEAQEQHAKLLRQVEADRRARTMVVPTKPEDVALKLRELGEPVRLFSENNADIRERLKKFLAAREMSVEEVDKIRGMVVAPKPSIVPRKMQMGGAGALAGKTGEGTAAVAPRKPEVVYTPA-SDALLEARADMATFSFSRGQRRLLGNKRRRS-SVEEASEVDRRAGETFSTMRNLAINCSQFGDTRPLSVIQ 198
            ++LSE SK AQE+HA++LR++EA+RRAR + VPT  E+V L+LR+LG+P+ LFSE  AD RERL+K L+  E+  EE      +       ++  + Q GG      K  +          ++ Y P  +  L +AR  +  FS  +  +RL   +  +    +E   +DR A   +     L+   SQ GD RPLS ++
Sbjct:   59 LELSETSKAAQEKHAQILRRMEAERRARNIAVPTSVEEVILRLRQLGQPITLFSEGPADRRERLRKLLSQLELQAEETGHTHHL-------LLELQNQNGGRDIRRQKETQ--------LDQLFYIPIKAPELRQARQAIFAFSIEKTAKRLKDERHEKVFEPKEHEAMDRYAASLYMAAEKLSNVESQSGDGRPLSCVK 243          
BLAST of mRNA_H-paniculata_contig5394.12818.1 vs. uniprot
Match: A0A2D4BCT3_PYTIN (SFM domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BCT3_PYTIN)

HSP 1 Score: 89.4 bits (220), Expect = 2.750e-17
Identity = 71/203 (34.98%), Postives = 109/203 (53.69%), Query Frame = 0
Query:    1 MDLSEESKEAQEQHAKLLRQVEADRRARTMVVPTKPEDVALKLRELGEPVRLFSENNADIRERLKKFLAAREMSVEE---VDKIRGMVVAPKPSIVPRKMQMGGAGALAGKTGEGTAAVAPRKPEVVYTPAS-DALLEARADMATFSFSRGQRRLLGNKRRRS-SVEEASEVDRRAGETFSTMRNLAINCSQFGDTRPLSVIQ 198
            + LSE S  AQE+HA+LLR++EA++RAR++ VPT  E+V L+LR+L +P+ LF E  AD RERL++ LA  E+  EE   VD++ G +      +           A+ GKT     AV   + ++ Y P   + L  AR D+  F+  R   RL   +   +    EA + D+RA   + T   +    SQ  D RP++ ++
Sbjct:   66 LQLSETSLAAQEKHAQLLRRIEAEKRARSITVPTSVEEVILRLRQLQQPITLFGEGPADRRERLRELLANIELEAEEGGVVDQLLGHLRQQDNELKGAAPSTAAGAAIQGKT----QAV---EDQLFYIPNQHNGLKAARTDIFAFAAERTAERLQRERAEHAWGPNEAIQCDQRAAALYLTAEKMVNVASQNADVRPVACVR 261          
BLAST of mRNA_H-paniculata_contig5394.12818.1 vs. uniprot
Match: F0WUG3_9STRA (U4/U6 small nuclear ribonucleoprotein Prp4 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WUG3_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 5.320e-17
Identity = 72/202 (35.64%), Postives = 111/202 (54.95%), Query Frame = 0
Query:    1 MDLSEESKEAQEQHAKLLRQVEADRRARTMVVPTKPEDVALKLRELGEPVRLFSENNADIRERLKKFLAAREMSVEEVDKIRGMVVAPKPSIVPRKMQMGGAGALAGKTGEGTAAVAPRKPEVVYTPA-SDALLEARADMATFSFSRGQRRLLGNKRRRSSVEEASE---VDRRAGETFSTMRNLAINCSQFGDTRPLSVIQ 198
            ++LSE SK AQE+HA++LR++EA+RRAR + VPT  ++V L+LR+LG+P+ L+SE  AD RERL++ L+  E+  EE      +++         ++Q   AG    +  E       +  ++ Y P  +  L +AR    TFS  +  +RL   + RR  V E  E   +DR A   + T   +    SQ GD RPLS ++
Sbjct:   59 LELSETSKAAQEKHAQILRRMEAERRARNIAVPTSVDEVILRLRQLGQPITLYSEGPADRRERLRQLLSQLELQAEESGHTHHLLL---------ELQNQHAGRDVRRQKE------TQIDQLFYIPIKAPELRQARQAFFTFSVEKTAQRL--KEERREKVFEPKEHEAMDRYAASLYITAERMVNVESQSGDGRPLSCVK 243          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5394.12818.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGI0_ECTSI2.120e-7472.36SFM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2WFU9_9STRA3.120e-3344.33Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835YL38_9STRA1.990e-3142.71Quinon protein alcohol dehydrogenase-like superfam... [more]
A0A8J2SIT3_9STRA5.550e-2236.36Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3HQA0_9STRA1.110e-2133.72Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
B8BQI8_THAPS2.200e-1938.58Small nuclear ribonucleoprotein prp4 (Fragment) n=... [more]
A0A3M6VKG6_9STRA4.600e-1838.50SFM domain-containing protein n=2 Tax=Peronospora ... [more]
A0A024GUH0_9STRA1.550e-1735.00SFM domain-containing protein n=1 Tax=Albugo candi... [more]
A0A2D4BCT3_PYTIN2.750e-1734.98SFM domain-containing protein n=1 Tax=Pythium insi... [more]
F0WUG3_9STRA5.320e-1735.64U4/U6 small nuclear ribonucleoprotein Prp4 putativ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 7..27
NoneNo IPR availablePANTHERPTHR19846:SF0U4/U6 SMALL NUCLEAR RIBONUCLEOPROTEIN PRP4coord: 1..198
NoneNo IPR availablePANTHERPTHR19846WD40 REPEAT PROTEINcoord: 1..198
IPR014906Pre-mRNA processing factor 4 (PRP4)-likeSMARTSM00500pr04_2coord: 34..79
e-value: 0.0094
score: 23.5
IPR014906Pre-mRNA processing factor 4 (PRP4)-likePFAMPF08799PRP4coord: 40..66
e-value: 3.3E-11
score: 42.5
IPR036285PRP4-like superfamilyGENE3D1.10.720.150coord: 4..83
e-value: 1.0E-7
score: 33.3
IPR036285PRP4-like superfamilySUPERFAMILY158230PRP4-likecoord: 17..70

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5394contigH-paniculata_contig5394:69..10277 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5394.12818.1mRNA_H-paniculata_contig5394.12818.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5394 69..10286 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5394.12818.1 ID=prot_H-paniculata_contig5394.12818.1|Name=mRNA_H-paniculata_contig5394.12818.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=199bp
MDLSEESKEAQEQHAKLLRQVEADRRARTMVVPTKPEDVALKLRELGEPV
RLFSENNADIRERLKKFLAAREMSVEEVDKIRGMVVAPKPSIVPRKMQMG
GAGALAGKTGEGTAAVAPRKPEVVYTPASDALLEARADMATFSFSRGQRR
LLGNKRRRSSVEEASEVDRRAGETFSTMRNLAINCSQFGDTRPLSVIQV
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014906PRP4-like
IPR036285PRP4-like_sf