mRNA_H-paniculata_contig5394.12818.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5394.12818.1 vs. uniprot
Match: D8LGI0_ECTSI (SFM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGI0_ECTSI) HSP 1 Score: 249 bits (637), Expect = 2.010e-76 Identity = 147/202 (72.77%), Postives = 162/202 (80.20%), Query Frame = 1
Query: 1 TEIMDLSEESKEAQEQHAKLLRQVEADRRARTMVVPTKPEDVALKLRELGEPVRLFSENNADIRERLKKFLAAREMSVEEVDKIRGMVVAPKPSIVPRKMQMGGAGALAGKTGEGTAAVAPRKPEVVYTPASDALLEARADMATFSFSRGQRRLLGNKRRRSSVEEASEVDRRAGETFSTMRNLAINCSQFGDTRPLSVIQV 606
TEIMDLSEESKEAQ++HA+LL+QVEADRRARTMVVPTK EDVA KLR+LG+PVRLFSEN ADIRERL++F+AA EM EE +KI GMV APKPS VPRKMQMGG A AG A +K EVVYTPASDALLEARA +AT SF R + RL G KRRR + EE S VDRRA ETFSTM+NLAIN SQF D RPLS IQV
Sbjct: 72 TEIMDLSEESKEAQQEHARLLKQVEADRRARTMVVPTKTEDVAKKLRQLGQPVRLFSENVADIRERLRRFIAASEMEDEEAEKIEGMV-APKPSFVPRKMQMGGEPA-AGAAXXXXXPPAAKKVEVVYTPASDALLEARAAIATMSFGRAKSRLAGAKRRRGTPEETSAVDRRAVETFSTMKNLAINSSQFADDRPLSAIQV 271
BLAST of mRNA_H-paniculata_contig5394.12818.1 vs. uniprot
Match: A0A7S2WFU9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WFU9_9STRA) HSP 1 Score: 136 bits (343), Expect = 2.500e-34 Identity = 87/196 (44.39%), Postives = 118/196 (60.20%), Query Frame = 1
Query: 4 EIMDLSEESKEAQEQHAKLLRQVEADRRARTMVVPTKPEDVALKLRELGEPVRLFSENNADIRERLKKFLAAREMSVEEVDKIRGMVVAPKPSIVPRKMQMGGAGALAGKTGEGTAAVAPRKPEVVYTPASDALLEARADMATFSFSRGQRRLLGNKRRRSSVEEASEVDRRAGETFSTMRNLAINCSQFGDTRPL 591
E+++LS S + Q++HA LLR+VEA+RRAR++VVPT PE+V +LR +G+PVRLF EN ADIRERL++F+A R++ +E GM+ P P+ AP K VY+ AS L+EAR + +S + R+ G KRRR S EE + VD A ET+ MR LAI+ SQF D RPL
Sbjct: 38 EVLELSATSLDEQDRHAVLLRRVEAERRARSIVVPTNPEEVRQQLRSIGQPVRLFGENLADIRERLREFIARRQLDGDEAP---GMLTEPMEEDKPK---------------------APEKKADVYSEASADLVEARQRIFDYSSTHTVERMAGVKRRRESAEERARVDESAKETYKDMRALAISASQFADERPL 209
BLAST of mRNA_H-paniculata_contig5394.12818.1 vs. uniprot
Match: A0A835YL38_9STRA (Quinon protein alcohol dehydrogenase-like superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL38_9STRA) HSP 1 Score: 134 bits (337), Expect = 3.350e-33 Identity = 87/202 (43.07%), Postives = 120/202 (59.41%), Query Frame = 1
Query: 1 TEIMDLSEESKEAQEQHAKLLRQVEADRRARTMVVPTKPEDVALKLRELGEPVRLFSENNADIRERLKKFLAAREMSVEEVDKIRGMVVAPKPSIVPRKMQMGGAGALAGKTGEGTAAVAPRKPEVVYTPASDALLEARADMATFSFSRGQRRLLGNKRRRSSVEEASEVDRRAGETFSTMRNLAINCSQFGDTRPLSVIQV 606
TE+M+LS S+E Q++HA++LR+VEA RRARTM VPT PE+VA LR LG+P+RLFSE AD+RERL++ LA ++ E + ++ A +P+ AAV K EVVYT A+ L+EAR +A++SF+ +RL KRRR AS D A + ++ L IN S GD RPLS ++V
Sbjct: 49 TEVMELSAASREEQDKHAEMLRKVEAHRRARTMAVPTLPEEVARALRRLGQPIRLFSETLADVRERLREHLAQLQLDGEGDAAVASLLAAAEPAKAA------------------AAAVEEGKAEVVYTVAAAPLIEAREVIASYSFAAAPQRLARAKRRRLDSAVASAEDAAAAAACTRLKGLVINVSAVGDERPLSAVRV 232
BLAST of mRNA_H-paniculata_contig5394.12818.1 vs. uniprot
Match: A0A3R7GQX6_9STRA (SFM domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GQX6_9STRA) HSP 1 Score: 109 bits (272), Expect = 4.030e-24 Identity = 80/206 (38.83%), Postives = 119/206 (57.77%), Query Frame = 1
Query: 1 TEIMDLSEESKEAQEQHAKLLRQVEADRRARTMVVPTKPEDVALKLRELGEPVRLFSENNADIRERLKKFLAAREMSVEEVDKIRGMVV-APKPSIVPRKMQMGGAGALAGKTG-EGTAAVAPRKPEVVYTPA-SDALLEARADMATFSFSRGQRRLLGNKRRRSSVEE--ASEVDRRAGETFSTMRNLAINCSQFGDTRPLSVIQ 603
TE++ LSE S+ AQE+HA+LLR++EA++RAR + VPT E+V +LR+LGEP+ LF E AD RERL+ L+ E+ EE + ++ K VP GG +AG+TG E + P++ E+ Y P +D L + RA + + S RL ++ + EE A VD A E ++T +A SQ GD RPL+ ++
Sbjct: 57 TEVLQLSESSRAAQEKHAQLLRRIEAEKRARNIAVPTSVEEVIRRLRQLGEPITLFGERPADRRERLRGILSQLELEAEETGFVHQVLADIQKQGAVP-----GGGETIAGETGAEADQSDKPQEDELFYVPIKNDQLKKVRAAIFDHTTSIVGARLKRERQEKQMSEEERARTVDHHAAELYATTLRMANIASQNGDVRPLASVR 257
BLAST of mRNA_H-paniculata_contig5394.12818.1 vs. uniprot
Match: G4ZDF0_PHYSP (SFM domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4ZDF0_PHYSP) HSP 1 Score: 108 bits (269), Expect = 7.570e-24 Identity = 79/209 (37.80%), Postives = 119/209 (56.94%), Query Frame = 1
Query: 1 TEIMDLSEESKEAQEQHAKLLRQVEADRRARTMVVPTKPEDVALKLRELGEPVRLFSENNADIRERLKKFLAAREMSVEEVDKIRGMVVAPKPSIVPRKMQMGGAGA-----LAGKTGEGTAAVAPRKPEVVYTPA-SDALLEARADMATFSFSRGQRRLLGNKRRR--SSVEEASEVDRRAGETFSTMRNLAINCSQFGDTRPLSVIQ 603
TE++ LSE S+ AQE+HA+LLR++EA++RAR + VPT E+V +LR+LGEP+ LF E AD RERL++ L+ E+ EE + + + + Q GGAGA AG G A P++ ++ Y P +D L ARA + + S RL ++ + S+ E A +D A E ++T +A SQ GD RPL+ ++
Sbjct: 54 TEVLQLSESSRAAQEKHAQLLRRIEAEKRARNIAVPTSVEEVIRRLRQLGEPITLFGERPADRRERLREILSRLELEAEETGFVHQV-------LADIQKQDGGAGAPAEGTAAGDEGAAGQASKPQEDQLFYVPIKNDGLKTARAAVFAHTTSVVGARLKRERQEKQMSAEERARTMDHHAAELYATALRMANIASQNGDVRPLASVR 255
BLAST of mRNA_H-paniculata_contig5394.12818.1 vs. uniprot
Match: W2R6V2_PHYPN (SFM domain-containing protein n=14 Tax=Phytophthora TaxID=4783 RepID=W2R6V2_PHYPN) HSP 1 Score: 106 bits (265), Expect = 2.600e-23 Identity = 79/204 (38.73%), Postives = 119/204 (58.33%), Query Frame = 1
Query: 1 TEIMDLSEESKEAQEQHAKLLRQVEADRRARTMVVPTKPEDVALKLRELGEPVRLFSENNADIRERLKKFLAAREMSVEEVDKIRGMVVAPKPSIVPRKMQMGGAGALAGKTGEGTAAVAPRKPEVVYTPA-SDALLEARADMATFSFSR-GQRRLLGNKRRRSSVEE-ASEVDRRAGETFSTMRNLAINCSQFGDTRPLSVIQ 603
TE++ LSE S+ AQE+HA+LLR++EA++RAR + VPT E+V +LR+LGEP+ LF E AD RERL++ L+ E+ EE + + + + Q GAGA AG G A P++ ++ Y P ++AL RA + + S G R + +R S+EE A +D A E ++T +A SQ GD RPL+ ++
Sbjct: 54 TEVLQLSESSRAAQEKHAQLLRRIEAEKRARNIAVPTIVEEVIRRLRQLGEPITLFGERPADRRERLREILSRLELEAEETGFVHEV-------LADIQRQDAGAGA-AGAEGAARKATKPQEDQLFYVPIKNEALKGVRATIFAHTASVVGTRLKRERQEQRMSLEERARTIDHHAAELYATALKMANVASQNGDVRPLASVR 249
BLAST of mRNA_H-paniculata_contig5394.12818.1 vs. uniprot
Match: A0A3F2S1S9_9STRA (SFM domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S1S9_9STRA) HSP 1 Score: 105 bits (263), Expect = 6.510e-23 Identity = 79/206 (38.35%), Postives = 118/206 (57.28%), Query Frame = 1
Query: 1 TEIMDLSEESKEAQEQHAKLLRQVEADRRARTMVVPTKPEDVALKLRELGEPVRLFSENNADIRERLKKFLAAREMSVEEVDKIRGMVV-APKPSIVPRKMQMGGAGALAGKTG-EGTAAVAPRKPEVVYTPA-SDALLEARADMATFSFSRGQRRLLGNKRRRSSVEE--ASEVDRRAGETFSTMRNLAINCSQFGDTRPLSVIQ 603
TE++ LSE S+ AQE+HA+LLR++EA++RAR + VPT E+V +LR+LGEP+ LF E AD RERL+ L+ E+ EE + ++ K VP GG AG+TG E + P++ E+ Y P ++ L + RA + + S RL ++ + EE A VD A E ++T +A SQ GD RPL+ ++
Sbjct: 57 TEVLQLSESSRAAQEKHAQLLRRIEAEKRARNIAVPTSVEEVIRRLRQLGEPITLFGERPADRRERLRGILSQLELEAEETGFVHQVLADIQKQGAVP-----GGDETTAGETGAEADQSDKPQEDELFYVPIKNEQLKKVRAAIFDHTTSIVGARLKRERQEKQMSEEERARTVDHHAAELYATTLRMANIASQNGDVRPLASVR 257
BLAST of mRNA_H-paniculata_contig5394.12818.1 vs. uniprot
Match: A0A2P4X876_9STRA (U4/U6 small nuclear ribonucleoprotein Prp4 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X876_9STRA) HSP 1 Score: 103 bits (257), Expect = 1.250e-22 Identity = 80/208 (38.46%), Postives = 121/208 (58.17%), Query Frame = 1
Query: 1 TEIMDLSEESKEAQEQHAKLLRQVEADRRARTMVVPTKPEDVALKLRELGEPVRLFSENNADIRERLKKFLAAREMSVEEVDKIRGMVVAPKPSIVPRKMQMG-GAGALAGKTGEGTAA---VAPRKPEVVYTPA-SDALLEARADMATFSFSRGQRRLLGNKRRR--SSVEEASEVDRRAGETFSTMRNLAINCSQFGDTRPLSVIQ 603
TE+++LSE S+ AQE+HA+LLR++EA++RAR + VPT E+V +LR+LGEP+ LF E AD RERL++ L+ E+ EE G V I +K ++G GAG T E A P++ ++ Y P ++ L ARA + + + RL ++ R S+ E A VD+ A E ++T +A SQ GD RPL+ ++
Sbjct: 54 TEVLELSESSRAAQEKHAQLLRRIEAEKRARNIAVPTSVEEVIRRLRQLGEPITLFGERPADRRERLREILSRLELEAEET----GFVHQVLADI--QKQEVGTGAGESGAATREERRAGRYTKPQEDQLFYVPIKNEKLKSARAAIFAHTTTVVGARLKRERQERQMSAEERARTVDQHAAELYATALKMANIASQNGDVRPLASVR 255
BLAST of mRNA_H-paniculata_contig5394.12818.1 vs. uniprot
Match: A0A662XLR5_9STRA (SFM domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XLR5_9STRA) HSP 1 Score: 103 bits (258), Expect = 2.430e-22 Identity = 76/207 (36.71%), Postives = 115/207 (55.56%), Query Frame = 1
Query: 1 TEIMDLSEESKEAQEQHAKLLRQVEADRRARTMVVPTKPEDVALKLRELGEPVRLFSENNADIRERLKKFLAAREMSVEEVDKIRGMVVAPKPSIVPRKMQMGGAGALAGKTGEGTAAVAPRKPE---VVYTPASDALLE-ARADMATFSFSRGQRRLLGNKRRR--SSVEEASEVDRRAGETFSTMRNLAINCSQFGDTRPLSVIQ 603
TE++ LSE S+ AQE+HA+LLR++EA++RAR + VPT ++V +LR+LGEPV LF E AD RERL++ L+ E+ EE + ++ + ++ GAG A KP+ + Y P + L+ ARA + S S G RL ++ + S+ E VDR A E ++T +A SQ GD RPL+ ++
Sbjct: 60 TEVLQLSESSRAAQEKHAQLLRRIEAEKRARNIAVPTSVDEVIRRLRQLGEPVTLFGERPADRRERLRELLSRLELEAEETGFVHQVLAD-----IQKQGSAPGAGEEAAXXXXXXXXXXXXKPQEDQLFYVPIKNVELKNARAAIFAHSVSAGSARLKRERQEKQLSAEERTRAVDRHAAELYATAAKMANIASQNGDVRPLASVR 261
BLAST of mRNA_H-paniculata_contig5394.12818.1 vs. uniprot
Match: A0A8J2SIT3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SIT3_9STRA) HSP 1 Score: 102 bits (255), Expect = 6.070e-22 Identity = 72/198 (36.36%), Postives = 109/198 (55.05%), Query Frame = 1
Query: 13 DLSEESKEAQEQHAKLLRQVEADRRARTMVVPTKPEDVALKLRELGEPVRLFSENNADIRERLKKFLAAREMSVEEVDKIRGMVVAPK-PSIVPRKMQMGGAGALAGKTGEGTAAVAPRKPEVVYTPASDALLEARADMATFSFSRGQRRLLGNKRRRSSVEEASEVDRRAGETFSTMRNLAINCSQFGDTRPLSVIQ 603
DL+E S++ Q +HA LLR+V+A++RAR +VVPT +V LR+LG PVRLF E+ AD+RERL+ LA E+ E+ + + ++ P + PR AA R E VY+ AS L+ AR +A +F R +RRL + R ++ A TF+ +R+LA+ SQ D RP++ ++
Sbjct: 78 DLNETSRQDQARHAALLRRVDAEKRARRIVVPTGDNEVRAMLRKLGHPVRLFGESAADVRERLRSALARVEIEGEDRELVAALLAQPSVEELQPR------------------AASVRRGKEEVYSAASRELVGARRALAPGTFDRARRRLAEQRLHRDDAAAVDALNEAAAGTFAKLRSLALAQSQAADARPVASVR 257 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5394.12818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5394.12818.1 >prot_H-paniculata_contig5394.12818.1 ID=prot_H-paniculata_contig5394.12818.1|Name=mRNA_H-paniculata_contig5394.12818.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=199bp MDLSEESKEAQEQHAKLLRQVEADRRARTMVVPTKPEDVALKLRELGEPVback to top mRNA from alignment at H-paniculata_contig5394:69..10286- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5394.12818.1 ID=mRNA_H-paniculata_contig5394.12818.1|Name=mRNA_H-paniculata_contig5394.12818.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10218bp|location=Sequence derived from alignment at H-paniculata_contig5394:69..10286- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5394:69..10286- >mRNA_H-paniculata_contig5394.12818.1 ID=mRNA_H-paniculata_contig5394.12818.1|Name=mRNA_H-paniculata_contig5394.12818.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1194bp|location=Sequence derived from alignment at H-paniculata_contig5394:69..10286- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |