prot_H-paniculata_contig53756.12802.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig53756.12802.1
Unique Nameprot_H-paniculata_contig53756.12802.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length88
Homology
BLAST of mRNA_H-paniculata_contig53756.12802.1 vs. uniprot
Match: A0A6H5KUT9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT9_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 8.250e-20
Identity = 49/89 (55.06%), Postives = 62/89 (69.66%), Query Frame = 0
Query:    1 MVLAIAAEYNLECWQLDYNTTFLNADIEEEVYVKMAPEYEEFDENVVPMVMRLIKGLYN--QTPSNWWWTIDKHLAEIGFKSLKSDPCV 87
            MVLAIAAE + E  QLD  T+FL AD+EE+V+VKMAP +E  + N   +VM+L   LY   Q+P NWW TID  L E+GF+ LKS+ CV
Sbjct:  356 MVLAIAAEMDWEVRQLDVKTSFLYADLEEDVFVKMAPGFEARNANGHKLVMKLGVSLYGLAQSPQNWWKTIDPKLIELGFEPLKSESCV 444          
BLAST of mRNA_H-paniculata_contig53756.12802.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 5.760e-17
Identity = 48/89 (53.93%), Postives = 58/89 (65.17%), Query Frame = 0
Query:    1 MVLAIAAEYNLECWQLDYNTTFLNADIEEEVYVKMAPEYEEFDENVVPMVMRLIKGLYN--QTPSNWWWTIDKHLAEIGFKSLKSDPCV 87
            MV AIAAE +L+  QLD  T FL ADIEE V+V+MAP YE  +   + +VM+L K L    Q+P +W  TID  L EIGF  LKSD CV
Sbjct:  395 MVFAIAAEKDLDVIQLDVKTAFLYADIEENVFVEMAPGYEAKNMEELQLVMKLEKSLDGLAQSPQDWLKTIDSSLVEIGFFPLKSDTCV 483          
BLAST of mRNA_H-paniculata_contig53756.12802.1 vs. uniprot
Match: W7T0D1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0D1_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.090e-11
Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = 0
Query:    1 MVLAIAAEYNLECWQLDYNTTFLNADIEEEVYVKMAPEYEEFDENVVPMVMRLIKGLYN--QTPSNWWWTIDKHLAEIGFKSLKSDPCV 87
            +VLA+A   +LE   +D +T +L +D+EE+VY+K  P YE++  N   +V RL K LY   Q+  NW   ID      GF S  +DPC+
Sbjct:  327 LVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSTDPCL 415          
BLAST of mRNA_H-paniculata_contig53756.12802.1 vs. uniprot
Match: W7T9Y7_9STRA (Retrotransposon ty1-copia subclass n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9Y7_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.890e-11
Identity = 35/89 (39.33%), Postives = 51/89 (57.30%), Query Frame = 0
Query:    1 MVLAIAAEYNLECWQLDYNTTFLNADIEEEVYVKMAPEYEEFDENVVPMVMRLIKGLYN--QTPSNWWWTIDKHLAEIGFKSLKSDPCV 87
            ++LAIA   +LE   +D +T +L +D+EE++YVK  P YE++  N   +V  L K LY   Q+  NW   ID      GF S  +DPC+
Sbjct:   53 LILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQYGPNGEELVCLLHKSLYGLKQSGINWHKKIDGWFRGYGFHSSSTDPCL 141          
BLAST of mRNA_H-paniculata_contig53756.12802.1 vs. uniprot
Match: A0A1M2V3W8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V3W8_TRAPU)

HSP 1 Score: 68.2 bits (165), Expect = 2.050e-11
Identity = 40/90 (44.44%), Postives = 55/90 (61.11%), Query Frame = 0
Query:    1 MVLAIAAEYNLECWQLDYNTTFLNADIEEEVYVKMAPEYEEFDENVVPMVMRLIKGLYNQTPSNWWWT--IDKHL-AEIGFKSLKSDPCV 87
            ++LAIAAE N+E  Q D    +LNAD++EE+Y++  P YEE    +V    RL K LY    +   W   I+K L A++GF+ L SDPCV
Sbjct:  110 LLLAIAAERNMELAQFDVVGAYLNADLDEEIYMRQPPGYEEGSSPIV----RLRKALYGLKQAGXQWNHHINKVLTADLGFQRLNSDPCV 195          
BLAST of mRNA_H-paniculata_contig53756.12802.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 3.640e-11
Identity = 36/89 (40.45%), Postives = 51/89 (57.30%), Query Frame = 0
Query:    1 MVLAIAAEYNLECWQLDYNTTFLNADIEEEVYVKMAPEYEEFDENVVPMVMRLIKGLYN--QTPSNWWWTIDKHLAEIGFKSLKSDPCV 87
            ++LAIA   +LE   +D +T +L +D+EE++YVK  P YE+   N   +V RL K LY   Q+  NW   ID      GF S  +DPC+
Sbjct:   69 LILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCL 157          
BLAST of mRNA_H-paniculata_contig53756.12802.1 vs. uniprot
Match: W7TJI6_9STRA (Retrotransposon ty1-copia subclass n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJI6_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.460e-10
Identity = 33/89 (37.08%), Postives = 52/89 (58.43%), Query Frame = 0
Query:    1 MVLAIAAEYNLECWQLDYNTTFLNADIEEEVYVKMAPEYEEFDENVVPMVMRLIKGLYN--QTPSNWWWTIDKHLAEIGFKSLKSDPCV 87
            ++LA+A   +LE   +D +T +L +D+EE++YVK  P YE++  N   ++ RL K LY   Q+  NW   ID+      F S  +DPC+
Sbjct:  111 LILALACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQYGPNGEELLCRLHKSLYGLKQSGRNWHKKIDEWFRGYCFHSSSADPCL 199          
BLAST of mRNA_H-paniculata_contig53756.12802.1 vs. uniprot
Match: A0A7S1SHQ1_9CHLO (Hypothetical protein (Fragment) n=2 Tax=Eukaryota TaxID=2759 RepID=A0A7S1SHQ1_9CHLO)

HSP 1 Score: 63.5 bits (153), Expect = 1.710e-10
Identity = 39/88 (44.32%), Postives = 47/88 (53.41%), Query Frame = 0
Query:    2 VLAIAAEYNLECWQLDYNTTFLNADIEEEVYVKMAPEYEEFDENVVPMVMRLIKGLYN--QTPSNWWWTIDKHLAEIGFKSLKSDPCV 87
            +LA+AA  + E  QLD  T FL ADIEEE+Y++    +  FD N    V  L K LY   Q P NW  TI   L E GF   K DP +
Sbjct:   10 LLALAAYNDWEVEQLDVVTAFLEADIEEEIYMRQPEGFRHFDINGEERVCLLKKSLYGLKQAPRNWNKTITAWLEEYGFTQSKVDPGI 97          
BLAST of mRNA_H-paniculata_contig53756.12802.1 vs. uniprot
Match: A0A0V0ZUS1_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella patagoniensis TaxID=990121 RepID=A0A0V0ZUS1_9BILA)

HSP 1 Score: 65.1 bits (157), Expect = 2.490e-10
Identity = 34/94 (36.17%), Postives = 56/94 (59.57%), Query Frame = 0
Query:    2 VLAIAAEYNLECWQLDYNTTFLNADIEEEVYVKMAPEYEE------FDENVVPMVMRLIKGLYN--QTPSNWWWTIDKHLAEIGFKSLKSDPCV 87
            +LAI+A Y L   QLD+ +T+LN +IEEE+Y+++  + +E        +N+   V R+ K LY   Q+   W+  +D+ L++ G K+   DPCV
Sbjct:  512 ILAISANYGLIAHQLDFVSTYLNGEIEEEIYMEIPEKLDEVLKCSKMKQNLDGKVCRIRKALYGLKQSGRQWYKKLDEKLSQYGLKATSGDPCV 605          
BLAST of mRNA_H-paniculata_contig53756.12802.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.250e-10
Identity = 35/89 (39.33%), Postives = 49/89 (55.06%), Query Frame = 0
Query:    1 MVLAIAAEYNLECWQLDYNTTFLNADIEEEVYVKMAPEYEEFDENVVPMVMRLIKGLYN--QTPSNWWWTIDKHLAEIGFKSLKSDPCV 87
            +VLA+A   +LE   +D    +L +D+EE+VYVK  P YE++  N   +V RL K LY   Q+  NW   ID      GF    +DPC+
Sbjct:   69 LVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCL 157          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53756.12802.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUT9_9PHAE8.250e-2055.06Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L6R7_9PHAE5.760e-1753.93Integrase catalytic domain-containing protein n=1 ... [more]
W7T0D1_9STRA1.090e-1140.45Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7T9Y7_9STRA1.890e-1139.33Retrotransposon ty1-copia subclass n=1 Tax=Nannoch... [more]
A0A1M2V3W8_TRAPU2.050e-1144.44Retrovirus-related Pol polyprotein from transposon... [more]
W7TII5_9STRA3.640e-1140.45Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7TJI6_9STRA1.460e-1037.08Retrotransposon ty1-copia subclass n=2 Tax=Nannoch... [more]
A0A7S1SHQ1_9CHLO1.710e-1044.32Hypothetical protein (Fragment) n=2 Tax=Eukaryota ... [more]
A0A0V0ZUS1_9BILA2.490e-1036.17Retrovirus-related Pol polyprotein from transposon... [more]
W7TCB8_9STRA3.250e-1039.33Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..81
e-value: 3.8E-14
score: 52.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53756contigH-paniculata_contig53756:361..967 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53756.12802.1mRNA_H-paniculata_contig53756.12802.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig53756 361..1027 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig53756.12802.1 ID=prot_H-paniculata_contig53756.12802.1|Name=mRNA_H-paniculata_contig53756.12802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
MVLAIAAEYNLECWQLDYNTTFLNADIEEEVYVKMAPEYEEFDENVVPMV
MRLIKGLYNQTPSNWWWTIDKHLAEIGFKSLKSDPCV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2