mRNA_H-paniculata_contig53756.12802.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig53756.12802.1
Unique NamemRNA_H-paniculata_contig53756.12802.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig53756.12802.1 vs. uniprot
Match: A0A6H5KUT9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT9_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.990e-25
Identity = 55/107 (51.40%), Postives = 75/107 (70.09%), Query Frame = 1
Query:    1 MVLAIAAEYNLECWQLDYNTTFLNADIEEEVYVKMAPEYEEFDENVVPMVMRLIKGLYN--QTPSNWWWTIDKHLAEIGFKSLKSDPCV*VYSESNAIIVLPLYIDD 315
            MVLAIAAE + E  QLD  T+FL AD+EE+V+VKMAP +E  + N   +VM+L   LY   Q+P NWW TID  L E+GF+ LKS+ CV +Y  +N ++++ LY+DD
Sbjct:  356 MVLAIAAEMDWEVRQLDVKTSFLYADLEEDVFVKMAPGFEARNANGHKLVMKLGVSLYGLAQSPQNWWKTIDPKLIELGFEPLKSESCVYIYQRNNTVVIITLYVDD 462          
BLAST of mRNA_H-paniculata_contig53756.12802.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.620e-23
Identity = 57/110 (51.82%), Postives = 74/110 (67.27%), Query Frame = 1
Query:    1 MVLAIAAEYNLECWQLDYNTTFLNADIEEEVYVKMAPEYEEFDENVVPMVMRLIKGLYN--QTPSNWWWTIDKHLAEIGFKSLKSDPCV*VYSESNAIIVLPLYIDDVLL 324
            MV AIAAE +L+  QLD  T FL ADIEE V+V+MAP YE  +   + +VM+L K L    Q+P +W  TID  L EIGF  LKSD CV +Y  +N ++VL LY+DD+L+
Sbjct:  395 MVFAIAAEKDLDVIQLDVKTAFLYADIEENVFVEMAPGYEAKNMEELQLVMKLEKSLDGLAQSPQDWLKTIDSSLVEIGFFPLKSDTCVYIYDHNNTVVVLTLYVDDLLI 504          
BLAST of mRNA_H-paniculata_contig53756.12802.1 vs. uniprot
Match: W7T9Y7_9STRA (Retrotransposon ty1-copia subclass n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9Y7_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.720e-15
Identity = 43/111 (38.74%), Postives = 66/111 (59.46%), Query Frame = 1
Query:    1 MVLAIAAEYNLECWQLDYNTTFLNADIEEEVYVKMAPEYEEFDENVVPMVMRLIKGLYN--QTPSNWWWTIDKHLAEIGFKSLKSDPCV*V-YSESNAIIVLPLYIDDVLL 324
            ++LAIA   +LE   +D +T +L +D+EE++YVK  P YE++  N   +V  L K LY   Q+  NW   ID      GF S  +DPC+ V +  S  I+V+ LY+DD+++
Sbjct:   53 LILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQYGPNGEELVCLLHKSLYGLKQSGINWHKKIDGWFRGYGFHSSSTDPCLYVKFGSSGEILVIVLYVDDLII 163          
BLAST of mRNA_H-paniculata_contig53756.12802.1 vs. uniprot
Match: A0A7S1SHQ1_9CHLO (Hypothetical protein (Fragment) n=2 Tax=Eukaryota TaxID=2759 RepID=A0A7S1SHQ1_9CHLO)

HSP 1 Score: 75.1 bits (183), Expect = 1.260e-14
Identity = 46/106 (43.40%), Postives = 58/106 (54.72%), Query Frame = 1
Query:    4 VLAIAAEYNLECWQLDYNTTFLNADIEEEVYVKMAPEYEEFDENVVPMVMRLIKGLYN--QTPSNWWWTIDKHLAEIGFKSLKSDPCV*VYSESNAIIVLPLYIDD 315
            +LA+AA  + E  QLD  T FL ADIEEE+Y++    +  FD N    V  L K LY   Q P NW  TI   L E GF   K DP + V+ +   + VL LY+DD
Sbjct:   10 LLALAAYNDWEVEQLDVVTAFLEADIEEEIYMRQPEGFRHFDINGEERVCLLKKSLYGLKQAPRNWNKTITAWLEEYGFTQSKVDPGIYVFIKEGELYVLALYVDD 115          
BLAST of mRNA_H-paniculata_contig53756.12802.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.090e-14
Identity = 43/111 (38.74%), Postives = 66/111 (59.46%), Query Frame = 1
Query:    1 MVLAIAAEYNLECWQLDYNTTFLNADIEEEVYVKMAPEYEEFDENVVPMVMRLIKGLYN--QTPSNWWWTIDKHLAEIGFKSLKSDPCV*V-YSESNAIIVLPLYIDDVLL 324
            ++LAIA   +LE   +D +T +L +D+EE++YVK  P YE+   N   +V RL K LY   Q+  NW   ID      GF S  +DPC+ V +  S  ++V+ LY+DD+++
Sbjct:   69 LILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEMLVIVLYVDDLII 179          
BLAST of mRNA_H-paniculata_contig53756.12802.1 vs. uniprot
Match: W7TJI6_9STRA (Retrotransposon ty1-copia subclass n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJI6_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 5.120e-14
Identity = 41/110 (37.27%), Postives = 66/110 (60.00%), Query Frame = 1
Query:    1 MVLAIAAEYNLECWQLDYNTTFLNADIEEEVYVKMAPEYEEFDENVVPMVMRLIKGLYN--QTPSNWWWTIDKHLAEIGFKSLKSDPCV*V-YSESNAIIVLPLYIDDVL 321
            ++LA+A   +LE   +D +T +L +D+EE++YVK  P YE++  N   ++ RL K LY   Q+  NW   ID+      F S  +DPC+ V +  S  I+V+ LY+DD++
Sbjct:  111 LILALACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQYGPNGEELLCRLHKSLYGLKQSGRNWHKKIDEWFRGYCFHSSSADPCLYVKFGSSGEILVIVLYVDDLI 220          
BLAST of mRNA_H-paniculata_contig53756.12802.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.470e-13
Identity = 43/111 (38.74%), Postives = 64/111 (57.66%), Query Frame = 1
Query:    1 MVLAIAAEYNLECWQLDYNTTFLNADIEEEVYVKMAPEYEEFDENVVPMVMRLIKGLYN--QTPSNWWWTIDKHLAEIGFKSLKSDPCV*V-YSESNAIIVLPLYIDDVLL 324
            +VLA+A   +LE   +D    +L +D+EE+VYVK  P YE++  N   +V RL K LY   Q+  NW   ID      GF    +DPC+ V +  S  I+V+ LY+DD+++
Sbjct:   69 LVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEILVIVLYVDDLII 179          
BLAST of mRNA_H-paniculata_contig53756.12802.1 vs. uniprot
Match: A0A5N6LDN8_9ASTR (Integrase catalytic domain-containing protein n=5 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LDN8_9ASTR)

HSP 1 Score: 75.1 bits (183), Expect = 1.610e-13
Identity = 47/115 (40.87%), Postives = 64/115 (55.65%), Query Frame = 1
Query:    1 MVLAIAAEYNLECWQLDYNTTFLNADIEEEVYVKM-----APEYEEFDENVVPMVMRLIKGLY--NQTPSNWWWTIDKHLAEIGFKSLKSDPCV*VYSESNAIIVLPLYIDDVLL 324
            +VLAIAA  NLE  Q+D  TTFLN D+EEE+Y++      AP  E         V +L+K LY  NQ P  W    D+ +   GFK  + D CV V +     ++L LY+DD+L+
Sbjct:  366 LVLAIAALRNLEVHQMDVKTTFLNGDLEEEIYMEQPEGLSAPGQE-------GKVCKLVKSLYGLNQAPKQWHQKFDQVMLNNGFKINECDKCVYVKNTMRGYVILCLYVDDMLI 473          
BLAST of mRNA_H-paniculata_contig53756.12802.1 vs. uniprot
Match: A0A2I0IJP3_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0IJP3_PUNGR)

HSP 1 Score: 73.2 bits (178), Expect = 6.500e-13
Identity = 40/108 (37.04%), Postives = 61/108 (56.48%), Query Frame = 1
Query:    1 MVLAIAAEYNLECWQLDYNTTFLNADIEEEVYVKMAPEYEEFDENVVPMVMRLIKGLYNQTPSNWWWTIDKHLAEIGFKSLKSDPCV*VYSESNAIIVLPLYIDDVLL 324
            ++LAIAA Y+ E WQ+D  T FLN  IEE++++     +E  D++ V  + R I GL  Q   +W    D+ +   GF   + +PCV   +  + I  L LY+DD+LL
Sbjct:  171 IMLAIAAHYDYEVWQMDVKTAFLNVSIEEDIFMDQPKGFESKDKSKVCKLKRSIYGL-TQVSRSWNRRFDEAVKSFGFIKYEDEPCVYKKASGSMIAFLVLYVDDILL 277          
BLAST of mRNA_H-paniculata_contig53756.12802.1 vs. uniprot
Match: A0A8J4F5P8_9CHLO (Uncharacterized protein n=4 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4F5P8_9CHLO)

HSP 1 Score: 73.2 bits (178), Expect = 7.810e-13
Identity = 40/106 (37.74%), Postives = 61/106 (57.55%), Query Frame = 1
Query:    7 LAIAAEYNLECWQLDYNTTFLNADIEEEVYVKMAPEYEEFDENVVPMVMRLIKGLYNQTPSNWWWTIDKHLAEIGFKSLKSDPCV*VYSESNAIIVLPLYIDDVLL 324
            LA+ A  N+E  QLD  T FLN ++EEEV+VK  P +EE   NVV  + + + GL  Q    W+  +  HL E G++  ++DP + V       + + +Y+DDVL+
Sbjct:  991 LAMVAANNMELHQLDVKTAFLNGELEEEVFVKQPPGFEEGGPNVVGRLHKALYGL-RQASRAWYKKLHDHLMEQGYRVSEADPSLYVRERDGVTVYVLVYVDDVLI 1095          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53756.12802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUT9_9PHAE1.990e-2551.40Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L6R7_9PHAE1.620e-2351.82Integrase catalytic domain-containing protein n=1 ... [more]
W7T9Y7_9STRA3.720e-1538.74Retrotransposon ty1-copia subclass n=1 Tax=Nannoch... [more]
A0A7S1SHQ1_9CHLO1.260e-1443.40Hypothetical protein (Fragment) n=2 Tax=Eukaryota ... [more]
W7TII5_9STRA3.090e-1438.74Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7TJI6_9STRA5.120e-1437.27Retrotransposon ty1-copia subclass n=2 Tax=Nannoch... [more]
W7TCB8_9STRA1.470e-1338.74Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]
A0A5N6LDN8_9ASTR1.610e-1340.87Integrase catalytic domain-containing protein n=5 ... [more]
A0A2I0IJP3_PUNGR6.500e-1337.04Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8J4F5P8_9CHLO7.810e-1337.74Uncharacterized protein n=4 Tax=Volvox africanus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53756contigH-paniculata_contig53756:361..1027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue2.5e-08
Seed eggNOG ortholog164328.Phyra85518
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs3QH4V@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size324
Cds size264
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53756.12802.1prot_H-paniculata_contig53756.12802.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig53756 361..967 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930549.2958138-CDS-H-paniculata_contig53756:360..5351622930549.2958138-CDS-H-paniculata_contig53756:360..535Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53756 361..535 +
1691481343.7723987-CDS-H-paniculata_contig53756:360..5351691481343.7723987-CDS-H-paniculata_contig53756:360..535Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53756 361..535 +
1622930549.3318863-CDS-H-paniculata_contig53756:878..9671622930549.3318863-CDS-H-paniculata_contig53756:878..967Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53756 879..967 +
1691481343.7827797-CDS-H-paniculata_contig53756:878..9671691481343.7827797-CDS-H-paniculata_contig53756:878..967Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53756 879..967 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930549.3815415-UTR-H-paniculata_contig53756:967..10271622930549.3815415-UTR-H-paniculata_contig53756:967..1027Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig53756 968..1027 +
1691481343.7926285-UTR-H-paniculata_contig53756:967..10271691481343.7926285-UTR-H-paniculata_contig53756:967..1027Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig53756 968..1027 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig53756.12802.1

>prot_H-paniculata_contig53756.12802.1 ID=prot_H-paniculata_contig53756.12802.1|Name=mRNA_H-paniculata_contig53756.12802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
MVLAIAAEYNLECWQLDYNTTFLNADIEEEVYVKMAPEYEEFDENVVPMV
MRLIKGLYNQTPSNWWWTIDKHLAEIGFKSLKSDPCV*
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mRNA from alignment at H-paniculata_contig53756:361..1027+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig53756.12802.1 ID=mRNA_H-paniculata_contig53756.12802.1|Name=mRNA_H-paniculata_contig53756.12802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=667bp|location=Sequence derived from alignment at H-paniculata_contig53756:361..1027+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGCTGGCGATAGCGGCGGAGTACAATCTAGAGTGCTGGCAACTCGA CTACAACACCACGTTTCTGAACGCTGACATCGAGGAGGAGGTGTACGTCA AGATGGCACCAGAATACGAGGAGTTCGACGAAAACGTAGTTCCAATGGTA ATGAGGCTTATTAAGGGCCTCTATAGTCTTTGCTAGAGCCCATCTCGGCA CCGATGTTGTGAAAAAAACGATTTCACGTTTCCGGTTACCGTGCATGGAA CAGCCGCACGTGATGAGCGCGATGTCGGCCATTTCTCGTTTATCATACCG TGAAACCCTGTTATGGTACCCTGACCTAGCCTTCAAAGTACAGCCTTTAG GAATCGTTGGAACGGGCTCTCGGAATAAGTGATTAGCCTCCTTGTGGGAT TCCGGATACCCCCGTTTACTGCACGTACTATTTTTATGGTTGTAATCTGT ATCTTGCACTCGGGCAAGGTTTGGGCACCGAAGTACTATGCCAAAATATA CTGCATGATACCGAGAAGACCAAACACCATCGAACTGGTGGTGGACTATC GACAAACACCTGGCGGAGATCGGTTTCAAAAGCCTCAAGTCAGACCCGTG CGTCTAGGTCTACTCAGAAAGCAACGCCATCATCGTTTTACCCCTGTACA TCGATGATGTTCTTCTT
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Coding sequence (CDS) from alignment at H-paniculata_contig53756:361..1027+

>mRNA_H-paniculata_contig53756.12802.1 ID=mRNA_H-paniculata_contig53756.12802.1|Name=mRNA_H-paniculata_contig53756.12802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig53756:361..1027+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGCTGGCGATAGCGGCGGAGTACAATCTAGAGTGCTGGCAACTCGA
CTACAACACCACGTTTCTGAACGCTGACATCGAGGAGGAGGTGTACGTCA
AGATGGCACCAGAATACGAGGAGTTCGACGAAAACGTAGTTCCAATGGTA
ATGAGGCTTATTAAGGGCCTCTATAATGGTGCTGGCGATAGCGGCGGAGT
ACAATCTAGAGTGCTGGCAACTCGACTACAACACCACGTTTCTGAACGCT
GACATCGAGGAGGAGGTGTACGTCAAGATGGCACCAGAATACGAGGAGTT
CGACGAAAACGTAGTTCCAATGGTAATGAGGCTTATTAAGGGCCTCTATA
ACCAAACACCATCGAACTGGTGGTGGACTATCGACAAACACCTGGCGGAG
ATCGGTTTCAAAAGCCTCAAGTCAGACCCGTGCGTCTAGACCAAACACCA
TCGAACTGGTGGTGGACTATCGACAAACACCTGGCGGAGATCGGTTTCAA
AAGCCTCAAGTCAGACCCGTGCGTCTAG
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