mRNA_H-paniculata_contig5368.12789.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5368.12789.1 vs. uniprot
Match: D7G245_ECTSI (Rab18, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G245_ECTSI) HSP 1 Score: 355 bits (911), Expect = 7.600e-116 Identity = 176/185 (95.14%), Postives = 179/185 (96.76%), Query Frame = 1
Query: 1 SSIMLRFTDDTFDEHLQSTIGVDFKVKMLDKAGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLETSAKTKVGVRQVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPNPYQGGGGFCCG 555
SSIMLRFTDDTFD+HLQSTIGVDFKVKM+D GKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLE SAKTKVGV+QVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPNP Q GGG CCG
Sbjct: 26 SSIMLRFTDDTFDDHLQSTIGVDFKVKMVDAGGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLEASAKTKVGVKQVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPNPNQAGGGLCCG 210
BLAST of mRNA_H-paniculata_contig5368.12789.1 vs. uniprot
Match: A0A835YPZ0_9STRA (Rab18, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPZ0_9STRA) HSP 1 Score: 280 bits (715), Expect = 1.210e-86 Identity = 144/186 (77.42%), Postives = 160/186 (86.02%), Query Frame = 1
Query: 1 SSIMLRFTDDTFDEHLQSTIGVDFKVKMLDKAGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLETSAKTKVGVRQVFEEVVQKILDNPSLLANTAPGRPRDTVD--PSRPNPYQGGGGFCC 552
SSIMLRFTDD+FD+ LQSTIGVDFKVKM++ K+IKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDV RPETFDNL+KWLEEVETYHPGRGR+VVKLLVGNKVD R V R QAE +ARSKGMLFLE SAKT+VG+RQ FEEVV KIL++P+LLANT PG+PR TVD ++ P G GG C
Sbjct: 24 SSIMLRFTDDSFDDKLQSTIGVDFKVKMMEVGDKKIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVERPETFDNLNKWLEEVETYHPGRGRDVVKLLVGNKVDCPRAVPREQAEAWARSKGMLFLEASAKTEVGIRQAFEEVVHKILESPALLANTTPGKPR-TVDLAATQNTPPSGAGGCGC 208
BLAST of mRNA_H-paniculata_contig5368.12789.1 vs. uniprot
Match: A0A4D9D7L4_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7L4_9STRA) HSP 1 Score: 269 bits (687), Expect = 1.630e-82 Identity = 136/184 (73.91%), Postives = 155/184 (84.24%), Query Frame = 1
Query: 1 SSIMLRFTDDTFDEHLQSTIGVDFKVKMLDKAGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLETSAKTKVGVRQVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPNPYQGGGGFCC 552
SSI+LRFTDD FD+H QSTIGVDFKVKM++ KRIKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R E+F+NL+ WL+EVE Y G GRE+VK+LVGNKVDKER+V R +AE +ARSKGMLFLE SAKT+ G+RQVF EVVQKILDNPSLL NTAPGRPR V+ +G GG+CC
Sbjct: 26 SSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAPGRPR--VNLQADAAAKGSGGYCC 207
BLAST of mRNA_H-paniculata_contig5368.12789.1 vs. uniprot
Match: A0A067C8B0_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C8B0_SAPPC) HSP 1 Score: 269 bits (687), Expect = 1.860e-82 Identity = 135/186 (72.58%), Postives = 155/186 (83.33%), Query Frame = 1
Query: 1 SSIMLRFTDDTFDEHLQSTIGVDFKVKMLDKAGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLETSAKTKVGVRQVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPN--PYQGGGGFCC 552
SS++LRFTDDTFD+HLQSTIGVDFKVKM+ GKRIKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R ETF+NL WL+EVE Y P GR+VVKLLVGNK+DKERVV+R + E +ARSKGMLF+E+SAKTK+G++QVF EVVQKILDNP+LLANTAP V+ S P+ GG CC
Sbjct: 26 SSMLLRFTDDTFDDHLQSTIGVDFKVKMMQVDGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVARKETFENLGTWLQEVEVYSPANGRDVVKLLVGNKIDKERVVSRQEGEAWARSKGMLFVESSAKTKIGIQQVFNEVVQKILDNPALLANTAPRSRAKKVNLSADKYAPHANAGGGCC 211
BLAST of mRNA_H-paniculata_contig5368.12789.1 vs. uniprot
Match: K3WMM1_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WMM1_GLOUD) HSP 1 Score: 262 bits (670), Expect = 4.610e-80 Identity = 131/184 (71.20%), Postives = 155/184 (84.24%), Query Frame = 1
Query: 1 SSIMLRFTDDTFDEHLQSTIGVDFKVKMLDKAGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLETSAKTKVGVRQVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPNPYQGGGGFCC 552
SS++LRFTDDTFD++LQSTIGVDFKVKM+ GKRIKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R +TF+NL WL+EVE Y P G++VVKLLVGNK+DKERVV+R +AE++ARSKGMLF+E+SAKTK+G++QVF EVVQKIL+NP+LL T P R D S + GGGG CC
Sbjct: 21 SSMLLRFTDDTFDDNLQSTIGVDFKVKMMQVDGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIVLVYDVARRDTFENLDLWLQEVEVYSPAGGKDVVKLLVGNKIDKERVVSRREAEDWARSKGMLFVESSAKTKIGIQQVFNEVVQKILENPALLGTTRP-RTNDRATLSGKDGKSGGGGGCC 203
BLAST of mRNA_H-paniculata_contig5368.12789.1 vs. uniprot
Match: D0NMU9_PHYIT (Rab18 family GTPase, putative n=6 Tax=Oomycota TaxID=4762 RepID=D0NMU9_PHYIT) HSP 1 Score: 260 bits (665), Expect = 2.440e-79 Identity = 130/184 (70.65%), Postives = 155/184 (84.24%), Query Frame = 1
Query: 1 SSIMLRFTDDTFDEHLQSTIGVDFKVKMLDKAGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLETSAKTKVGVRQVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPNPYQGGGGFCC 552
SS++LRFTDDTFD++LQSTIGVDFKVKM+ GK+IKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R +TF+NL WL+EVE Y P GR+VVKLLVGNK+DKERVV+R +AE++ARSKGMLF+E+SAKTK+G++QVF EVVQKIL+NP+LL+NTAP +D GGG CC
Sbjct: 21 SSMLLRFTDDTFDDNLQSTIGVDFKVKMMQVDGKKIKMTIWDTAGQERFRTLTSSYYRGAQGIVLVYDVARRDTFENLDLWLQEVEVYSPAGGRDVVKLLVGNKIDKERVVSRREAEDWARSKGMLFVESSAKTKIGIQQVFNEVVQKILENPALLSNTAPRSRGRKLDAKAEK--SGGGNGCC 202
BLAST of mRNA_H-paniculata_contig5368.12789.1 vs. uniprot
Match: A0A6A3N672_9STRA (Uncharacterized protein n=21 Tax=Peronosporaceae TaxID=4777 RepID=A0A6A3N672_9STRA) HSP 1 Score: 260 bits (665), Expect = 9.290e-79 Identity = 130/184 (70.65%), Postives = 155/184 (84.24%), Query Frame = 1
Query: 1 SSIMLRFTDDTFDEHLQSTIGVDFKVKMLDKAGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLETSAKTKVGVRQVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPNPYQGGGGFCC 552
SS++LRFTDDTFD++LQSTIGVDFKVKM+ GK+IKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R +TF+NL WL+EVE Y P GR+VVKLLVGNK+DKERVV+R +AE++ARSKGMLF+E+SAKTK+G++QVF EVVQKIL+NP+LL+NTAP +D GGG CC
Sbjct: 61 SSMLLRFTDDTFDDNLQSTIGVDFKVKMMQVDGKKIKMTIWDTAGQERFRTLTSSYYRGAQGIVLVYDVARRDTFENLDLWLQEVEVYSPAGGRDVVKLLVGNKIDKERVVSRREAEDWARSKGMLFVESSAKTKIGIQQVFNEVVQKILENPALLSNTAPRNRGRKLDGKAEK--SGGGSGCC 242
BLAST of mRNA_H-paniculata_contig5368.12789.1 vs. uniprot
Match: A0A6G0KMK3_9STRA (Uncharacterized protein n=4 Tax=Peronosporaceae TaxID=4777 RepID=A0A6G0KMK3_9STRA) HSP 1 Score: 260 bits (665), Expect = 1.630e-78 Identity = 130/184 (70.65%), Postives = 155/184 (84.24%), Query Frame = 1
Query: 1 SSIMLRFTDDTFDEHLQSTIGVDFKVKMLDKAGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLETSAKTKVGVRQVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPNPYQGGGGFCC 552
SS++LRFTDDTFD++LQSTIGVDFKVKM+ GK+IKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R +TF+NL WL+EVE Y P GR+VVKLLVGNK+DKERVV+R +AE++ARSKGMLF+E+SAKTK+G++QVF EVVQKIL+NP+LL+NTAP +D GGG CC
Sbjct: 78 SSMLLRFTDDTFDDNLQSTIGVDFKVKMMQVDGKKIKMTIWDTAGQERFRTLTSSYYRGAQGIVLVYDVARRDTFENLDLWLQEVEVYSPAGGRDVVKLLVGNKIDKERVVSRREAEDWARSKGMLFVESSAKTKIGIQQVFNEVVQKILENPALLSNTAPRNRGRKLDGKAEK--SGGGSGCC 259
BLAST of mRNA_H-paniculata_contig5368.12789.1 vs. uniprot
Match: A0A024TX33_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TX33_9STRA) HSP 1 Score: 256 bits (655), Expect = 1.520e-77 Identity = 130/184 (70.65%), Postives = 151/184 (82.07%), Query Frame = 1
Query: 1 SSIMLRFTDDTFDEHLQSTIGVDFKVKMLDKAGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLETSAKTKVGVRQVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPNPYQGGGGFCC 552
SS++LRFT+DTFD+HLQSTIGVDFKVKM+ GKRIKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R +TF NL WL+EVE Y P GR+VVKLLVGNK+DKERVV+R + E +ARSKGMLF+E+SAKTK G++QVF EVVQKILDNP+LL+NTAP +D + P G CC
Sbjct: 43 SSMLLRFTEDTFDDHLQSTIGVDFKVKMITVDGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIVLVYDVARRDTFANLDTWLQEVEVYSPANGRDVVKLLVGNKIDKERVVSRREGEAWARSKGMLFVESSAKTKTGIQQVFNEVVQKILDNPTLLSNTAPKSRVAKLDLADARPAASSG--CC 224
BLAST of mRNA_H-paniculata_contig5368.12789.1 vs. uniprot
Match: A0A7S2CPE8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CPE8_9STRA) HSP 1 Score: 256 bits (655), Expect = 1.680e-77 Identity = 123/184 (66.85%), Postives = 154/184 (83.70%), Query Frame = 1
Query: 1 SSIMLRFTDDTFDEHLQSTIGVDFKVKMLDKAGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLETSAKTKVGVRQVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPNPYQGGGGFCC 552
SSIMLRF DD FD+H+ STIGVDFKVKM+++ GKR+KMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDVTR +TF++L +WL+E+E Y PG GREVVKLLVGNK D+E VV R +A E+ARSKGM+FLETSAKT +G++Q F+EVV+K+LDNP L+ NT+PG+P+ ++ ++ G CC
Sbjct: 44 SSIMLRFCDDHFDQHIGSTIGVDFKVKMMNRRGKRVKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRADTFESLDQWLQELEVYCPGGGREVVKLLVGNKKDQESVVERDRAMEWARSKGMIFLETSAKTDMGIKQAFQEVVEKVLDNPMLMVNTSPGKPKVELNKAKGQNENRNSGACC 227 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5368.12789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5368.12789.1 >prot_H-paniculata_contig5368.12789.1 ID=prot_H-paniculata_contig5368.12789.1|Name=mRNA_H-paniculata_contig5368.12789.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=183bp MLRFTDDTFDEHLQSTIGVDFKVKMLDKAGKRIKMTIWDTAGQERFRTLTback to top mRNA from alignment at H-paniculata_contig5368:159..8524+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5368.12789.1 ID=mRNA_H-paniculata_contig5368.12789.1|Name=mRNA_H-paniculata_contig5368.12789.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8366bp|location=Sequence derived from alignment at H-paniculata_contig5368:159..8524+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5368:159..8524+ >mRNA_H-paniculata_contig5368.12789.1 ID=mRNA_H-paniculata_contig5368.12789.1|Name=mRNA_H-paniculata_contig5368.12789.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1098bp|location=Sequence derived from alignment at H-paniculata_contig5368:159..8524+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |