prot_H-paniculata_contig53647.12787.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig53647.12787.1
Unique Nameprot_H-paniculata_contig53647.12787.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length111
Homology
BLAST of mRNA_H-paniculata_contig53647.12787.1 vs. uniprot
Match: D7FP33_ECTSI (E3 ubiquitin-protein ligase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP33_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.930e-30
Identity = 58/109 (53.21%), Postives = 80/109 (73.39%), Query Frame = 0
Query:    1 FSQTTTTASEVLYWDGETYEDTEISVMYLEMMIGKFQYMKIKEIDPVDPWAIIGAIGGVWQIICVGFGAFFVFSVKQAPDRKLRNLEKSIRTPALLIRRRLSTASSRIS 109
            +SQ+TTT ++  YW  ET E  E +++ +++ I KF+Y  I E+DPVD W+IIGAIGG+WQ +  GFG FFV+SVKQ+PDRK+RN  KS+  PA ++ +RLST  SR S
Sbjct:  271 YSQSTTTGTQNWYWTEETIE-LEFALIMVDVSIPKFEYTSIVEVDPVDGWSIIGAIGGIWQFVVTGFGLFFVYSVKQSPDRKMRNFRKSVTKPASIVNKRLSTLGSRSS 378          
BLAST of mRNA_H-paniculata_contig53647.12787.1 vs. uniprot
Match: D7FP34_ECTSI (Similar to neural cell expressed, developmentally down-regulated 4-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP34_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 1.320e-29
Identity = 60/113 (53.10%), Postives = 74/113 (65.49%), Query Frame = 0
Query:    1 FSQTTTTASEVLYWDGETYEDTEISVMYLEMMIGKFQYMKIKEIDPVDPWAIIGAIGGVWQIICVGFGAFFVFSVKQAPDRKLRNLEKSIRTPALLIRRRLS--TASSRISQQ 111
            FSQ T T  E  +W  E Y+  E     +E+ IGKF++  I+E+DPVD W+IIGAIGG+WQ +  GFG FFVFS KQ+PDRK+RN  KSI  PA    +RLS    SSR S Q
Sbjct:  264 FSQATITGVEHWWWGAEDYDSVEFGFFMVELSIGKFEFTSIEEVDPVDGWSIIGAIGGIWQFVVTGFGLFFVFSEKQSPDRKMRNFRKSIGKPAEFANKRLSILNTSSRSSNQ 376          
BLAST of mRNA_H-paniculata_contig53647.12787.1 vs. uniprot
Match: A0A6H5JSI3_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI3_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.630e-26
Identity = 53/107 (49.53%), Postives = 78/107 (72.90%), Query Frame = 0
Query:    1 FSQTTTTASEVLYWDGETYEDTEISVMYLEMMIGKFQYMKIKEIDPVDPWAIIGAIGGVWQIICVGFGAFFVFSVKQAPDRKLRNLEKSIRTPALLIRRRLSTASSR 107
            F+Q++T+A+  + W    + + E++ +   M I KF+Y  I+++DPVD WAIIGAIGGVWQ + + FG FFVFS KQ PD+K+RN +KS+  PA +++R LS+ASSR
Sbjct:  311 FTQSSTSAT--VNWYNPDFNE-ELAALLFNMFIPKFEYTSIEQVDPVDGWAIIGAIGGVWQFVVIAFGLFFVFSEKQLPDKKIRNFKKSVAKPASMVKRHLSSASSR 414          
BLAST of mRNA_H-paniculata_contig53647.12787.1 vs. uniprot
Match: D8LQB8_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB8_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 2.210e-26
Identity = 53/107 (49.53%), Postives = 77/107 (71.96%), Query Frame = 0
Query:    1 FSQTTTTASEVLYWDGETYEDTEISVMYLEMMIGKFQYMKIKEIDPVDPWAIIGAIGGVWQIICVGFGAFFVFSVKQAPDRKLRNLEKSIRTPALLIRRRLSTASSR 107
            F+Q++T+A+  + W    + D E++ +   M I KF+Y  I+++DPVD WAIIGAIGGVWQ + + FG FFVFS KQ PD+K+RN +KS+  PA ++ R LS+A+SR
Sbjct:  280 FTQSSTSAT--VNWYNPDF-DEELAALLFNMFIPKFEYTSIEQVDPVDGWAIIGAIGGVWQFVVIAFGLFFVFSEKQLPDKKIRNFKKSVAKPASMVNRHLSSANSR 383          
BLAST of mRNA_H-paniculata_contig53647.12787.1 vs. uniprot
Match: A0A6H5JZ12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ12_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.300e-18
Identity = 49/116 (42.24%), Postives = 70/116 (60.34%), Query Frame = 0
Query:    1 FSQTTTTASEVLYWDGETYEDTEISVMYLEMMIGKFQY------MKIKEIDPVDPWAIIGAI-GGVWQIICVGFGAFFVFSVKQAPDRKLRNLEKSIRTPALLIRRRLSTASSRIS 109
            +SQ+TTT ++  YW  ETY D E ++M +++ I KF+Y      M  +  + V PW  +        + +  GFG FFVFSVKQ+PDRK+RN  KS+  PA ++ +RLST  SR S
Sbjct:  294 YSQSTTTGTQNWYWTDETY-DFEFALMIVDVSIPKFEYTFIAVSMNQRSKEEVSPWFALPPFKDSAAEFVVTGFGLFFVFSVKQSPDRKMRNFRKSVTKPASIVNKRLSTLGSRSS 408          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53647.12787.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FP33_ECTSI1.930e-3053.21E3 ubiquitin-protein ligase, putative n=1 Tax=Ecto... [more]
D7FP34_ECTSI1.320e-2953.10Similar to neural cell expressed, developmentally ... [more]
A0A6H5JSI3_9PHAE1.630e-2649.53WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LQB8_ECTSI2.210e-2649.53WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JZ12_9PHAE3.300e-1842.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 76..111
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 50..75
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..49
NoneNo IPR availableTMHMMTMhelixcoord: 52..74

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53647contigH-paniculata_contig53647:476..808 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53647.12787.1mRNA_H-paniculata_contig53647.12787.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig53647 476..808 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig53647.12787.1 ID=prot_H-paniculata_contig53647.12787.1|Name=mRNA_H-paniculata_contig53647.12787.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
FSQTTTTASEVLYWDGETYEDTEISVMYLEMMIGKFQYMKIKEIDPVDPW
AIIGAIGGVWQIICVGFGAFFVFSVKQAPDRKLRNLEKSIRTPALLIRRR
LSTASSRISQQ
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