mRNA_H-paniculata_contig53647.12787.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig53647.12787.1
Unique NamemRNA_H-paniculata_contig53647.12787.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig53647.12787.1 vs. uniprot
Match: D7FP33_ECTSI (E3 ubiquitin-protein ligase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP33_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.930e-30
Identity = 58/109 (53.21%), Postives = 80/109 (73.39%), Query Frame = 1 
Query:    1 FSQTTTTASEVLYWDGETYEDTEISVMYLEMMIGKFQYMKIKEIDPVDPWAIIGAIGGVWQIICVGFGAFFVFSVKQAPDRKLRNLEKSIRTPALLIRRRLSTASSRIS 327
            +SQ+TTT ++  YW  ET E  E +++ +++ I KF+Y  I E+DPVD W+IIGAIGG+WQ +  GFG FFV+SVKQ+PDRK+RN  KS+  PA ++ +RLST  SR S
Sbjct:  271 YSQSTTTGTQNWYWTEETIE-LEFALIMVDVSIPKFEYTSIVEVDPVDGWSIIGAIGGIWQFVVTGFGLFFVYSVKQSPDRKMRNFRKSVTKPASIVNKRLSTLGSRSS 378
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BLAST of mRNA_H-paniculata_contig53647.12787.1 vs. uniprot
Match: D7FP34_ECTSI (Similar to neural cell expressed, developmentally down-regulated 4-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP34_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 1.320e-29
Identity = 60/113 (53.10%), Postives = 74/113 (65.49%), Query Frame = 1 
Query:    1 FSQTTTTASEVLYWDGETYEDTEISVMYLEMMIGKFQYMKIKEIDPVDPWAIIGAIGGVWQIICVGFGAFFVFSVKQAPDRKLRNLEKSIRTPALLIRRRLS--TASSRISQQ 333
            FSQ T T  E  +W  E Y+  E     +E+ IGKF++  I+E+DPVD W+IIGAIGG+WQ +  GFG FFVFS KQ+PDRK+RN  KSI  PA    +RLS    SSR S Q
Sbjct:  264 FSQATITGVEHWWWGAEDYDSVEFGFFMVELSIGKFEFTSIEEVDPVDGWSIIGAIGGIWQFVVTGFGLFFVFSEKQSPDRKMRNFRKSIGKPAEFANKRLSILNTSSRSSNQ 376
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BLAST of mRNA_H-paniculata_contig53647.12787.1 vs. uniprot
Match: A0A6H5JSI3_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI3_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.630e-26
Identity = 53/107 (49.53%), Postives = 78/107 (72.90%), Query Frame = 1 
Query:    1 FSQTTTTASEVLYWDGETYEDTEISVMYLEMMIGKFQYMKIKEIDPVDPWAIIGAIGGVWQIICVGFGAFFVFSVKQAPDRKLRNLEKSIRTPALLIRRRLSTASSR 321
            F+Q++T+A+  + W    + + E++ +   M I KF+Y  I+++DPVD WAIIGAIGGVWQ + + FG FFVFS KQ PD+K+RN +KS+  PA +++R LS+ASSR
Sbjct:  311 FTQSSTSAT--VNWYNPDFNE-ELAALLFNMFIPKFEYTSIEQVDPVDGWAIIGAIGGVWQFVVIAFGLFFVFSEKQLPDKKIRNFKKSVAKPASMVKRHLSSASSR 414
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BLAST of mRNA_H-paniculata_contig53647.12787.1 vs. uniprot
Match: D8LQB8_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB8_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 2.210e-26
Identity = 53/107 (49.53%), Postives = 77/107 (71.96%), Query Frame = 1 
Query:    1 FSQTTTTASEVLYWDGETYEDTEISVMYLEMMIGKFQYMKIKEIDPVDPWAIIGAIGGVWQIICVGFGAFFVFSVKQAPDRKLRNLEKSIRTPALLIRRRLSTASSR 321
            F+Q++T+A+  + W    + D E++ +   M I KF+Y  I+++DPVD WAIIGAIGGVWQ + + FG FFVFS KQ PD+K+RN +KS+  PA ++ R LS+A+SR
Sbjct:  280 FTQSSTSAT--VNWYNPDF-DEELAALLFNMFIPKFEYTSIEQVDPVDGWAIIGAIGGVWQFVVIAFGLFFVFSEKQLPDKKIRNFKKSVAKPASMVNRHLSSANSR 383
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BLAST of mRNA_H-paniculata_contig53647.12787.1 vs. uniprot
Match: A0A6H5JZ12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ12_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.300e-18
Identity = 49/116 (42.24%), Postives = 70/116 (60.34%), Query Frame = 1 
Query:    1 FSQTTTTASEVLYWDGETYEDTEISVMYLEMMIGKFQY------MKIKEIDPVDPWAIIGAI-GGVWQIICVGFGAFFVFSVKQAPDRKLRNLEKSIRTPALLIRRRLSTASSRIS 327
            +SQ+TTT ++  YW  ETY D E ++M +++ I KF+Y      M  +  + V PW  +        + +  GFG FFVFSVKQ+PDRK+RN  KS+  PA ++ +RLST  SR S
Sbjct:  294 YSQSTTTGTQNWYWTDETY-DFEFALMIVDVSIPKFEYTFIAVSMNQRSKEEVSPWFALPPFKDSAAEFVVTGFGLFFVFSVKQSPDRKMRNFRKSVTKPASIVNKRLSTLGSRSS 408
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53647.12787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FP33_ECTSI1.930e-3053.21E3 ubiquitin-protein ligase, putative n=1 Tax=Ecto... [more]
D7FP34_ECTSI1.320e-2953.10Similar to neural cell expressed, developmentally ... [more]
A0A6H5JSI3_9PHAE1.630e-2649.53WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LQB8_ECTSI2.210e-2649.53WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JZ12_9PHAE3.300e-1842.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53647contigH-paniculata_contig53647:476..808 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.8
Seed ortholog evalue2.5e-26
Seed eggNOG ortholog2880.D7FP33
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin protein ligase activity
EggNOG OGsCOG5021@1,KOG0940@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930547.7133913-CDS-H-paniculata_contig53647:475..8081622930547.7133913-CDS-H-paniculata_contig53647:475..808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53647 476..808 -
1691481343.1823525-CDS-H-paniculata_contig53647:475..8081691481343.1823525-CDS-H-paniculata_contig53647:475..808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53647 476..808 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53647.12787.1prot_H-paniculata_contig53647.12787.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig53647 476..808 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig53647.12787.1

>prot_H-paniculata_contig53647.12787.1 ID=prot_H-paniculata_contig53647.12787.1|Name=mRNA_H-paniculata_contig53647.12787.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
FSQTTTTASEVLYWDGETYEDTEISVMYLEMMIGKFQYMKIKEIDPVDPW
AIIGAIGGVWQIICVGFGAFFVFSVKQAPDRKLRNLEKSIRTPALLIRRR
LSTASSRISQQ
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mRNA from alignment at H-paniculata_contig53647:476..808-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig53647.12787.1 ID=mRNA_H-paniculata_contig53647.12787.1|Name=mRNA_H-paniculata_contig53647.12787.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=333bp|location=Sequence derived from alignment at H-paniculata_contig53647:476..808- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCTCTCAGACGACGACGACCGCGTCAGAGGTGTTGTACTGGGACGGCGA
GACGTATGAAGATACGGAAATTTCCGTGATGTATTTGGAGATGATGATTG
GCAAGTTCCAGTACATGAAGATCAAAGAGATCGATCCCGTGGATCCGTGG
GCCATTATTGGGGCAATCGGCGGGGTTTGGCAGATCATATGTGTAGGCTT
TGGAGCGTTCTTCGTGTTCTCCGTGAAGCAGGCACCGGATCGCAAGCTGA
GAAACCTGGAGAAGAGTATAAGAACTCCGGCGCTTCTAATCCGAAGGAGG
CTTTCAACCGCAAGCTCCAGGATCTCACAACAG
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Coding sequence (CDS) from alignment at H-paniculata_contig53647:476..808-

>mRNA_H-paniculata_contig53647.12787.1 ID=mRNA_H-paniculata_contig53647.12787.1|Name=mRNA_H-paniculata_contig53647.12787.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig53647:476..808- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCTCTCAGACGACGACGACCGCGTCAGAGGTGTTGTACTGGGACGGCGA
GACGTATGAAGATACGGAAATTTCCGTGATGTATTTGGAGATGATGATTG
GCAAGTTCCAGTACATGAAGATCAAAGAGATCGATCCCGTGGATCCGTGG
GCCATTATTGGGGCAATCGGCGGGGTTTGGCAGATCATATGTGTAGGCTT
TGGAGCGTTCTTCGTGTTCTCCGTGAAGCAGGCACCGGATCGCAAGCTGA
GAAACCTGGAGAAGAGTATAAGAACTCCGGCGCTTCTAATCCGAAGGAGG
CTTTCAACCGCAAGCTCCAGGATCTCACAACAGTTCTCTCAGACGACGAC
GACCGCGTCAGAGGTGTTGTACTGGGACGGCGAGACGTATGAAGATACGG
AAATTTCCGTGATGTATTTGGAGATGATGATTGGCAAGTTCCAGTACATG
AAGATCAAAGAGATCGATCCCGTGGATCCGTGGGCCATTATTGGGGCAAT
CGGCGGGGTTTGGCAGATCATATGTGTAGGCTTTGGAGCGTTCTTCGTGT
TCTCCGTGAAGCAGGCACCGGATCGCAAGCTGAGAAACCTGGAGAAGAGT
ATAAGAACTCCGGCGCTTCTAATCCGAAGGAGGCTTTCAACCGCAAGCTC
CAGGATCTCACAACAG
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