mRNA_H-paniculata_contig53601.12782.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig53601.12782.1 vs. uniprot
Match: A0A6A4ZHD7_9STRA (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZHD7_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 3.540e-19 Identity = 59/152 (38.82%), Postives = 82/152 (53.95%), Query Frame = 1
Query: 4 EPKNHRDAQPSPEWKHRQSAEEVELQGLIDNGVWTQVERPKNKLVVS-TMIFKRKIGEDGKVEK*KCRLVAHRNLQIKDIHFQEALSPAPAAASTKMMLSLAAIQDWELRHVDFEQAYLQAPIDHEIFVEIPVKYQ-EFPGAVGCLDKAIYG 453
EP R A S E R+ A EL G++ NG W VERPK+ +VS +FK K + G V+K K RLVA Q + + +P AS +++ LAAI E+ H+DF QAYL A D +I++E+P + + VG L K +YG
Sbjct: 875 EPTTVRQAMASKEAIERRKAMMRELDGIVGNGTWEVVERPKHTNIVSHKWVFKVKYDQGGNVDKFKARLVARGFSQRYGVDYSNTYAPVIKQASVRLIYVLAAIFKCEITHLDFPQAYLNAKTDFDIYIELPEGFDVDTKKYVGLLRKGLYG 1026
BLAST of mRNA_H-paniculata_contig53601.12782.1 vs. uniprot
Match: A0A8I6XHP4_HORVV (Uncharacterized protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6XHP4_HORVV) HSP 1 Score: 92.8 bits (229), Expect = 4.670e-19 Identity = 53/153 (34.64%), Postives = 85/153 (55.56%), Query Frame = 1
Query: 4 EPKNHRDAQPSPEWKHRQSAEEVELQGLIDNGVWTQVERPKNKLVVSTM-IFKRKIGEDGKVEK*KCRLVAHRNLQIKDIHFQEALSPAPAAASTKMMLSLAAIQDWELRHVDFEQAYLQAPIDHEIFVEIPVKYQEF--PGAVGCLDKAIYG 453
EP N +A SP W H A + E++ + NG WT V RP N+ V ++K K G + K K RLVA +Q + + + E +P + +++L+LAA +DW++ H+D + A+L + E++VE P+ Y++ G V L KA+YG
Sbjct: 669 EPANFVEASKSPSWTH---AMDEEMKAIESNGTWTLVTRPPNQKTVGLKWVYKLKKDTKGAIVKYKARLVAKGYVQRQGVDYDEVFAPVARIETVRVLLALAAQEDWKVHHMDVKSAFLNGDLTEEVYVEQPLGYEKKGEEGKVYKLKKALYG 818
BLAST of mRNA_H-paniculata_contig53601.12782.1 vs. uniprot
Match: A0A6A3QBQ5_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3QBQ5_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 9.010e-18 Identity = 54/143 (37.76%), Postives = 84/143 (58.74%), Query Frame = 1
Query: 34 SPEWKHRQSAEEVELQGLIDNGVWTQVERPKN-KLVVSTMIFKRKIGEDGKVEK*KCRLVAHRNLQIKDIHFQEALSPAPAAASTKMMLSLAAIQDWELRHVDFEQAYLQAPIDHEIFVEIPVKYQEFPGA--VGCLDKAIYG 453
S EW+ SA + E + L NG W V R K K++ + IF+ K +GK+E+ K RLVA +Q+ D+ + E SP + +++L+LAAI D+E+ +D A+L +PID E+++E P Y+E V LDK++YG
Sbjct: 17 SEEWR---SAADSEYRALKKNGTWKLVPRRKGMKVLGNRWIFRVKYLPNGKIERFKARLVAKGFMQVYDVDYLEVYSPVVRLETLRVLLTLAAIWDYEVDQMDVTTAFLNSPIDGEVYMEQPKGYEEAGKEDWVCMLDKSLYG 156
BLAST of mRNA_H-paniculata_contig53601.12782.1 vs. uniprot
Match: A0A4S4M1W0_9APHY (Uncharacterized protein (Fragment) n=1 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4M1W0_9APHY) HSP 1 Score: 88.2 bits (217), Expect = 2.000e-17 Identity = 47/148 (31.76%), Postives = 85/148 (57.43%), Query Frame = 1
Query: 22 DAQPSPEWKHRQSAEEVELQGLIDNGVWTQVERPKN--KLVVSTMIFKRKIGEDGKVEK*KCRLVAHRNLQIKDIHFQEALSPAPAAASTKMMLSLAAIQDWELRHVDFEQAYLQAPIDHEIFVEIPVKYQEFPGA--VGCLDKAIYG 453
+A+ P+W Q+A E++ L+ N WT VERP + +V S ++ + K G+++K K RLVA Q+ + + E +P +S +++L++AA +W+++ DF AYL +P+D ++++E P ++ V L KA+YG
Sbjct: 1159 EARKRPDWPKWQAAIGAEIENLVANNTWTVVERPPDDVNVVDSKIVLRVKKNAAGEIDKYKARLVARGFTQVHGVDYFETFAPVAKLSSFRLLLAIAARNNWDIKSFDFSSAYLNSPLDEDVYMEQPRGFESADRQKYVLKLAKALYG 1306
BLAST of mRNA_H-paniculata_contig53601.12782.1 vs. uniprot
Match: A0A392QXN2_9FABA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392QXN2_9FABA) HSP 1 Score: 83.2 bits (204), Expect = 2.310e-17 Identity = 52/153 (33.99%), Postives = 81/153 (52.94%), Query Frame = 1
Query: 4 EPKNHRDAQPSPEWKHRQSAEEVELQGLIDNGVWTQVERPKNKLVVSTM-IFKRKIGEDGKVEK*KCRLVAHRNLQIKDIHFQEALSPAPAAASTKMMLSLAAIQDWELRHVDFEQAYLQAPIDHEIFVEIPVKYQ--EFPGAVGCLDKAIYG 453
EP N +DA +P+W + A + E+ + N W VE P K +S IFK K DG + K K RLVA R LQ + I + E +P + + ++++A+ +W L H+D + A+L P+ E++V P ++ V LDKA+YG
Sbjct: 5 EPINWQDAIANPKWNN---AMQEEINSIEKNKTWKLVELPHQKKAISVKWIFKLKTNPDGSIVKHKARLVARRFLQQQGIDYTELYAPVARMETIRFVVAIASSFNWSLYHMDVKSAFLNGPLQEEVYVLQPPGFEVESEKDKVYKLDKALYG 154
BLAST of mRNA_H-paniculata_contig53601.12782.1 vs. uniprot
Match: A0A146H565_MYCCL (Polyprotein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H565_MYCCL) HSP 1 Score: 87.4 bits (215), Expect = 3.730e-17 Identity = 53/149 (35.57%), Postives = 80/149 (53.69%), Query Frame = 1
Query: 22 DAQPSPEWKHRQSAEEVELQGLIDNGVWTQVERPKNKLVVSTM-IFKRKIGEDGKVEK*KCRLVAHRNLQIKDIHFQEALSPAPAAASTKMMLSLAAIQDWELRHVDFEQAYLQAPID--HEIFVEIPVKYQEFPGAVGCL--DKAIYG 453
+A+ P+W H Q+A EL L G WT V RP + VV + + K G++EK K RLVA Q++ + + E +P AS +++L++AA DW++ DF AYL +D EIF+E P ++ A L +KA+YG
Sbjct: 1067 EARRRPDWPHWQAAINTELDSLKSAGTWTVVPRPSGRNVVDCKWVLRIKKNAAGEIEKYKARLVARGFTQVQGVDYYETFAPTAKIASIRLVLAIAARNDWDIDMFDFNSAYLNGELDTDEEIFMEQPPGHELADRATHVLRLNKALYG 1215
BLAST of mRNA_H-paniculata_contig53601.12782.1 vs. uniprot
Match: A0A6A3K257_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3K257_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 8.190e-17 Identity = 53/143 (37.06%), Postives = 83/143 (58.04%), Query Frame = 1
Query: 34 SPEWKHRQSAEEVELQGLIDNGVWTQVERPKN-KLVVSTMIFKRKIGEDGKVEK*KCRLVAHRNLQIKDIHFQEALSPAPAAASTKMMLSLAAIQDWELRHVDFEQAYLQAPIDHEIFVEIPVKYQEFPGA--VGCLDKAIYG 453
S EW+ SA + E + L NG W V R K K++ + IF+ +GK+E+ K RLVA +Q+ D+ + E SP + +++L+LAAI D+E+ +D A+L +PID E+++E P Y+E V LDK++YG
Sbjct: 17 SEEWR---SAADSEYRALKKNGTWKLVPRRKGMKVLGNRWIFRVNYLPNGKIERFKARLVAKGFMQVYDVDYLEVYSPVVRLETLRVLLTLAAIWDYEVDQMDVTTAFLNSPIDGEVYMEQPKGYEEAGKEDWVCMLDKSLYG 156
BLAST of mRNA_H-paniculata_contig53601.12782.1 vs. uniprot
Match: A0A177U7F2_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia caries TaxID=13290 RepID=A0A177U7F2_9BASI) HSP 1 Score: 85.9 bits (211), Expect = 1.250e-16 Identity = 50/151 (33.11%), Postives = 76/151 (50.33%), Query Frame = 1
Query: 4 EPKNHRDAQPSPEWKHRQSAEEVELQGLIDNGVWTQVERPKN-KLVVSTMIFKRKIGEDGKVEK*KCRLVAHRNLQIKDIHFQEALSPAPAAASTKMMLSLAAIQDWELRHVDFEQAYLQAPIDHEIFVEIPVKYQEFPGAVGCLDKAIYG 453
+P+ +A P+W +A ELQ + G W V+ P+ LV S + + K D ++K K RLVA QI + + E +P ++ SL+A D EL +DFE AYL A + H+I++E+P + P V L A+YG
Sbjct: 564 DPRTVGEAMARPDWPEWDAAMRKELQSHAERGTWEMVKVPEGVNLVTSKWVLRIKRNADATIQKYKGRLVARGFTQIHGVDYDETFAPTSRLQILRLFCSLSAALDLELHQIDFETAYLNAKLKHDIYMEVPEGVEALPDEVLKLRLALYG 714
BLAST of mRNA_H-paniculata_contig53601.12782.1 vs. uniprot
Match: A0A177TYW9_9BASI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Tilletia controversa TaxID=13291 RepID=A0A177TYW9_9BASI) HSP 1 Score: 85.9 bits (211), Expect = 1.270e-16 Identity = 50/151 (33.11%), Postives = 76/151 (50.33%), Query Frame = 1
Query: 4 EPKNHRDAQPSPEWKHRQSAEEVELQGLIDNGVWTQVERPKN-KLVVSTMIFKRKIGEDGKVEK*KCRLVAHRNLQIKDIHFQEALSPAPAAASTKMMLSLAAIQDWELRHVDFEQAYLQAPIDHEIFVEIPVKYQEFPGAVGCLDKAIYG 453
+P+ +A P+W +A ELQ + G W V+ P+ LV S + + K D ++K K RLVA QI + + E +P ++ SL+A D EL +DFE AYL A + H+I++E+P + P V L A+YG
Sbjct: 874 DPRTVGEAMARPDWPEWDAAMRKELQSHAERGTWEMVKVPEGVNLVTSKWVLRIKRNADATIQKYKGRLVARGFTQIHGVDYDETFAPTSRLQILRLFCSLSAALDLELHQIDFETAYLNAKLKHDIYMEVPEGVEALPDEVLKLRLALYG 1024
BLAST of mRNA_H-paniculata_contig53601.12782.1 vs. uniprot
Match: A0A438F5S8_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438F5S8_VITVI) HSP 1 Score: 84.7 bits (208), Expect = 2.750e-16 Identity = 49/129 (37.98%), Postives = 70/129 (54.26%), Query Frame = 1
Query: 73 ELQGLIDNGVWTQVERPKNKLVVSTM-IFKRKIGEDGKVEK*KCRLVAHRNLQIKDIHFQEALSPAPAAASTKMMLSLAAIQDWELRHVDFEQAYLQAPIDHEIFVEIPVKYQEFPGAVGC-LDKAIYG 453
E+ L N W VERPK K +V IF K DG +EK K RLVA Q + +QE +P + +++LSLAA +W L D + A+L +D EI++ IP+ +++ G C L KA+YG
Sbjct: 102 EMSALEKNKTWEIVERPKGKNIVDCKWIFTLKYKADGSLEKHKARLVAKGYTQTYGVDYQETFAPVAKMNTVRILLSLAAHYNWHLLQYDVKNAFLHGDLDEEIYMNIPLGFEDNIGNKVCKLKKALYG 230 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53601.12782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig53601.12782.1 >prot_H-paniculata_contig53601.12782.1 ID=prot_H-paniculata_contig53601.12782.1|Name=mRNA_H-paniculata_contig53601.12782.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp MMLSLAAIQDWELRHVDFEQAYLQAPIDHEIFVEIPVKYQEFPGAVGCLDback to top mRNA from alignment at H-paniculata_contig53601:3..455- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig53601.12782.1 ID=mRNA_H-paniculata_contig53601.12782.1|Name=mRNA_H-paniculata_contig53601.12782.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=453bp|location=Sequence derived from alignment at H-paniculata_contig53601:3..455- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig53601:3..455- >mRNA_H-paniculata_contig53601.12782.1 ID=mRNA_H-paniculata_contig53601.12782.1|Name=mRNA_H-paniculata_contig53601.12782.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig53601:3..455- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |