mRNA_H-paniculata_contig53601.12782.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig53601.12782.1
Unique NamemRNA_H-paniculata_contig53601.12782.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig53601.12782.1 vs. uniprot
Match: A0A6A4ZHD7_9STRA (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZHD7_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 3.540e-19
Identity = 59/152 (38.82%), Postives = 82/152 (53.95%), Query Frame = 1
Query:    4 EPKNHRDAQPSPEWKHRQSAEEVELQGLIDNGVWTQVERPKNKLVVS-TMIFKRKIGEDGKVEK*KCRLVAHRNLQIKDIHFQEALSPAPAAASTKMMLSLAAIQDWELRHVDFEQAYLQAPIDHEIFVEIPVKYQ-EFPGAVGCLDKAIYG 453
            EP   R A  S E   R+ A   EL G++ NG W  VERPK+  +VS   +FK K  + G V+K K RLVA    Q   + +    +P    AS +++  LAAI   E+ H+DF QAYL A  D +I++E+P  +  +    VG L K +YG
Sbjct:  875 EPTTVRQAMASKEAIERRKAMMRELDGIVGNGTWEVVERPKHTNIVSHKWVFKVKYDQGGNVDKFKARLVARGFSQRYGVDYSNTYAPVIKQASVRLIYVLAAIFKCEITHLDFPQAYLNAKTDFDIYIELPEGFDVDTKKYVGLLRKGLYG 1026          
BLAST of mRNA_H-paniculata_contig53601.12782.1 vs. uniprot
Match: A0A8I6XHP4_HORVV (Uncharacterized protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6XHP4_HORVV)

HSP 1 Score: 92.8 bits (229), Expect = 4.670e-19
Identity = 53/153 (34.64%), Postives = 85/153 (55.56%), Query Frame = 1
Query:    4 EPKNHRDAQPSPEWKHRQSAEEVELQGLIDNGVWTQVERPKNKLVVSTM-IFKRKIGEDGKVEK*KCRLVAHRNLQIKDIHFQEALSPAPAAASTKMMLSLAAIQDWELRHVDFEQAYLQAPIDHEIFVEIPVKYQEF--PGAVGCLDKAIYG 453
            EP N  +A  SP W H   A + E++ +  NG WT V RP N+  V    ++K K    G + K K RLVA   +Q + + + E  +P     + +++L+LAA +DW++ H+D + A+L   +  E++VE P+ Y++    G V  L KA+YG
Sbjct:  669 EPANFVEASKSPSWTH---AMDEEMKAIESNGTWTLVTRPPNQKTVGLKWVYKLKKDTKGAIVKYKARLVAKGYVQRQGVDYDEVFAPVARIETVRVLLALAAQEDWKVHHMDVKSAFLNGDLTEEVYVEQPLGYEKKGEEGKVYKLKKALYG 818          
BLAST of mRNA_H-paniculata_contig53601.12782.1 vs. uniprot
Match: A0A6A3QBQ5_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3QBQ5_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 9.010e-18
Identity = 54/143 (37.76%), Postives = 84/143 (58.74%), Query Frame = 1
Query:   34 SPEWKHRQSAEEVELQGLIDNGVWTQVERPKN-KLVVSTMIFKRKIGEDGKVEK*KCRLVAHRNLQIKDIHFQEALSPAPAAASTKMMLSLAAIQDWELRHVDFEQAYLQAPIDHEIFVEIPVKYQEFPGA--VGCLDKAIYG 453
            S EW+   SA + E + L  NG W  V R K  K++ +  IF+ K   +GK+E+ K RLVA   +Q+ D+ + E  SP     + +++L+LAAI D+E+  +D   A+L +PID E+++E P  Y+E      V  LDK++YG
Sbjct:   17 SEEWR---SAADSEYRALKKNGTWKLVPRRKGMKVLGNRWIFRVKYLPNGKIERFKARLVAKGFMQVYDVDYLEVYSPVVRLETLRVLLTLAAIWDYEVDQMDVTTAFLNSPIDGEVYMEQPKGYEEAGKEDWVCMLDKSLYG 156          
BLAST of mRNA_H-paniculata_contig53601.12782.1 vs. uniprot
Match: A0A4S4M1W0_9APHY (Uncharacterized protein (Fragment) n=1 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4M1W0_9APHY)

HSP 1 Score: 88.2 bits (217), Expect = 2.000e-17
Identity = 47/148 (31.76%), Postives = 85/148 (57.43%), Query Frame = 1
Query:   22 DAQPSPEWKHRQSAEEVELQGLIDNGVWTQVERPKN--KLVVSTMIFKRKIGEDGKVEK*KCRLVAHRNLQIKDIHFQEALSPAPAAASTKMMLSLAAIQDWELRHVDFEQAYLQAPIDHEIFVEIPVKYQEFPGA--VGCLDKAIYG 453
            +A+  P+W   Q+A   E++ L+ N  WT VERP +   +V S ++ + K    G+++K K RLVA    Q+  + + E  +P    +S +++L++AA  +W+++  DF  AYL +P+D ++++E P  ++       V  L KA+YG
Sbjct: 1159 EARKRPDWPKWQAAIGAEIENLVANNTWTVVERPPDDVNVVDSKIVLRVKKNAAGEIDKYKARLVARGFTQVHGVDYFETFAPVAKLSSFRLLLAIAARNNWDIKSFDFSSAYLNSPLDEDVYMEQPRGFESADRQKYVLKLAKALYG 1306          
BLAST of mRNA_H-paniculata_contig53601.12782.1 vs. uniprot
Match: A0A392QXN2_9FABA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392QXN2_9FABA)

HSP 1 Score: 83.2 bits (204), Expect = 2.310e-17
Identity = 52/153 (33.99%), Postives = 81/153 (52.94%), Query Frame = 1
Query:    4 EPKNHRDAQPSPEWKHRQSAEEVELQGLIDNGVWTQVERPKNKLVVSTM-IFKRKIGEDGKVEK*KCRLVAHRNLQIKDIHFQEALSPAPAAASTKMMLSLAAIQDWELRHVDFEQAYLQAPIDHEIFVEIPVKYQ--EFPGAVGCLDKAIYG 453
            EP N +DA  +P+W +   A + E+  +  N  W  VE P  K  +S   IFK K   DG + K K RLVA R LQ + I + E  +P     + + ++++A+  +W L H+D + A+L  P+  E++V  P  ++       V  LDKA+YG
Sbjct:    5 EPINWQDAIANPKWNN---AMQEEINSIEKNKTWKLVELPHQKKAISVKWIFKLKTNPDGSIVKHKARLVARRFLQQQGIDYTELYAPVARMETIRFVVAIASSFNWSLYHMDVKSAFLNGPLQEEVYVLQPPGFEVESEKDKVYKLDKALYG 154          
BLAST of mRNA_H-paniculata_contig53601.12782.1 vs. uniprot
Match: A0A146H565_MYCCL (Polyprotein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H565_MYCCL)

HSP 1 Score: 87.4 bits (215), Expect = 3.730e-17
Identity = 53/149 (35.57%), Postives = 80/149 (53.69%), Query Frame = 1
Query:   22 DAQPSPEWKHRQSAEEVELQGLIDNGVWTQVERPKNKLVVSTM-IFKRKIGEDGKVEK*KCRLVAHRNLQIKDIHFQEALSPAPAAASTKMMLSLAAIQDWELRHVDFEQAYLQAPID--HEIFVEIPVKYQEFPGAVGCL--DKAIYG 453
            +A+  P+W H Q+A   EL  L   G WT V RP  + VV    + + K    G++EK K RLVA    Q++ + + E  +P    AS +++L++AA  DW++   DF  AYL   +D   EIF+E P  ++    A   L  +KA+YG
Sbjct: 1067 EARRRPDWPHWQAAINTELDSLKSAGTWTVVPRPSGRNVVDCKWVLRIKKNAAGEIEKYKARLVARGFTQVQGVDYYETFAPTAKIASIRLVLAIAARNDWDIDMFDFNSAYLNGELDTDEEIFMEQPPGHELADRATHVLRLNKALYG 1215          
BLAST of mRNA_H-paniculata_contig53601.12782.1 vs. uniprot
Match: A0A6A3K257_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3K257_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 8.190e-17
Identity = 53/143 (37.06%), Postives = 83/143 (58.04%), Query Frame = 1
Query:   34 SPEWKHRQSAEEVELQGLIDNGVWTQVERPKN-KLVVSTMIFKRKIGEDGKVEK*KCRLVAHRNLQIKDIHFQEALSPAPAAASTKMMLSLAAIQDWELRHVDFEQAYLQAPIDHEIFVEIPVKYQEFPGA--VGCLDKAIYG 453
            S EW+   SA + E + L  NG W  V R K  K++ +  IF+     +GK+E+ K RLVA   +Q+ D+ + E  SP     + +++L+LAAI D+E+  +D   A+L +PID E+++E P  Y+E      V  LDK++YG
Sbjct:   17 SEEWR---SAADSEYRALKKNGTWKLVPRRKGMKVLGNRWIFRVNYLPNGKIERFKARLVAKGFMQVYDVDYLEVYSPVVRLETLRVLLTLAAIWDYEVDQMDVTTAFLNSPIDGEVYMEQPKGYEEAGKEDWVCMLDKSLYG 156          
BLAST of mRNA_H-paniculata_contig53601.12782.1 vs. uniprot
Match: A0A177U7F2_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia caries TaxID=13290 RepID=A0A177U7F2_9BASI)

HSP 1 Score: 85.9 bits (211), Expect = 1.250e-16
Identity = 50/151 (33.11%), Postives = 76/151 (50.33%), Query Frame = 1
Query:    4 EPKNHRDAQPSPEWKHRQSAEEVELQGLIDNGVWTQVERPKN-KLVVSTMIFKRKIGEDGKVEK*KCRLVAHRNLQIKDIHFQEALSPAPAAASTKMMLSLAAIQDWELRHVDFEQAYLQAPIDHEIFVEIPVKYQEFPGAVGCLDKAIYG 453
            +P+   +A   P+W    +A   ELQ   + G W  V+ P+   LV S  + + K   D  ++K K RLVA    QI  + + E  +P       ++  SL+A  D EL  +DFE AYL A + H+I++E+P   +  P  V  L  A+YG
Sbjct:  564 DPRTVGEAMARPDWPEWDAAMRKELQSHAERGTWEMVKVPEGVNLVTSKWVLRIKRNADATIQKYKGRLVARGFTQIHGVDYDETFAPTSRLQILRLFCSLSAALDLELHQIDFETAYLNAKLKHDIYMEVPEGVEALPDEVLKLRLALYG 714          
BLAST of mRNA_H-paniculata_contig53601.12782.1 vs. uniprot
Match: A0A177TYW9_9BASI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Tilletia controversa TaxID=13291 RepID=A0A177TYW9_9BASI)

HSP 1 Score: 85.9 bits (211), Expect = 1.270e-16
Identity = 50/151 (33.11%), Postives = 76/151 (50.33%), Query Frame = 1
Query:    4 EPKNHRDAQPSPEWKHRQSAEEVELQGLIDNGVWTQVERPKN-KLVVSTMIFKRKIGEDGKVEK*KCRLVAHRNLQIKDIHFQEALSPAPAAASTKMMLSLAAIQDWELRHVDFEQAYLQAPIDHEIFVEIPVKYQEFPGAVGCLDKAIYG 453
            +P+   +A   P+W    +A   ELQ   + G W  V+ P+   LV S  + + K   D  ++K K RLVA    QI  + + E  +P       ++  SL+A  D EL  +DFE AYL A + H+I++E+P   +  P  V  L  A+YG
Sbjct:  874 DPRTVGEAMARPDWPEWDAAMRKELQSHAERGTWEMVKVPEGVNLVTSKWVLRIKRNADATIQKYKGRLVARGFTQIHGVDYDETFAPTSRLQILRLFCSLSAALDLELHQIDFETAYLNAKLKHDIYMEVPEGVEALPDEVLKLRLALYG 1024          
BLAST of mRNA_H-paniculata_contig53601.12782.1 vs. uniprot
Match: A0A438F5S8_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438F5S8_VITVI)

HSP 1 Score: 84.7 bits (208), Expect = 2.750e-16
Identity = 49/129 (37.98%), Postives = 70/129 (54.26%), Query Frame = 1
Query:   73 ELQGLIDNGVWTQVERPKNKLVVSTM-IFKRKIGEDGKVEK*KCRLVAHRNLQIKDIHFQEALSPAPAAASTKMMLSLAAIQDWELRHVDFEQAYLQAPIDHEIFVEIPVKYQEFPGAVGC-LDKAIYG 453
            E+  L  N  W  VERPK K +V    IF  K   DG +EK K RLVA    Q   + +QE  +P     + +++LSLAA  +W L   D + A+L   +D EI++ IP+ +++  G   C L KA+YG
Sbjct:  102 EMSALEKNKTWEIVERPKGKNIVDCKWIFTLKYKADGSLEKHKARLVAKGYTQTYGVDYQETFAPVAKMNTVRILLSLAAHYNWHLLQYDVKNAFLHGDLDEEIYMNIPLGFEDNIGNKVCKLKKALYG 230          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53601.12782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A4ZHD7_9STRA3.540e-1938.82Integrase catalytic domain-containing protein (Fra... [more]
A0A8I6XHP4_HORVV4.670e-1934.64Uncharacterized protein n=1 Tax=Hordeum vulgare su... [more]
A0A6A3QBQ5_9STRA9.010e-1837.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4S4M1W0_9APHY2.000e-1731.76Uncharacterized protein (Fragment) n=1 Tax=Antrodi... [more]
A0A392QXN2_9FABA2.310e-1733.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A146H565_MYCCL3.730e-1735.57Polyprotein n=1 Tax=Mycena chlorophos TaxID=658473... [more]
A0A6A3K257_9STRA8.190e-1737.06Retrovirus-related Pol polyprotein from transposon... [more]
A0A177U7F2_9BASI1.250e-1633.11Integrase catalytic domain-containing protein n=1 ... [more]
A0A177TYW9_9BASI1.270e-1633.11Integrase catalytic domain-containing protein (Fra... [more]
A0A438F5S8_VITVI2.750e-1637.98Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53601contigH-paniculata_contig53601:3..455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size453
Cds size165
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930547.0493577-CDS-H-paniculata_contig53601:2..1671622930547.0493577-CDS-H-paniculata_contig53601:2..167Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53601 3..167 -
1691481342.8362422-CDS-H-paniculata_contig53601:2..1671691481342.8362422-CDS-H-paniculata_contig53601:2..167Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53601 3..167 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930547.0610342-UTR-H-paniculata_contig53601:167..4551622930547.0610342-UTR-H-paniculata_contig53601:167..455Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig53601 168..455 -
1691481342.8460016-UTR-H-paniculata_contig53601:167..4551691481342.8460016-UTR-H-paniculata_contig53601:167..455Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig53601 168..455 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53601.12782.1prot_H-paniculata_contig53601.12782.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig53601 3..167 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig53601.12782.1

>prot_H-paniculata_contig53601.12782.1 ID=prot_H-paniculata_contig53601.12782.1|Name=mRNA_H-paniculata_contig53601.12782.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
MMLSLAAIQDWELRHVDFEQAYLQAPIDHEIFVEIPVKYQEFPGAVGCLD
KAIYG
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mRNA from alignment at H-paniculata_contig53601:3..455-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig53601.12782.1 ID=mRNA_H-paniculata_contig53601.12782.1|Name=mRNA_H-paniculata_contig53601.12782.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=453bp|location=Sequence derived from alignment at H-paniculata_contig53601:3..455- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGAGCCCAAGAATCACCGAGATGCACAGCCGTCGCCGGAGTGGAAACA CAGGCAAAGTGCGGAGGAAGTCGAGCTGCAAGGCCTCATCGACAACGGGG TTTGGACGCAAGTGGAGCGCCCGAAGAACAAGCTGGTCGTGAGCACGATG ATTTTCAAAAGAAAAATCGGCGAGGATGGCAAAGTGGAGAAATAAAAGTG CCGCCTGGTCGCCCACAGGAACCTTCAGATCAAGGACATCCACTTCCAGG AAGCTTTGTCCCCTGCACCCGCAGCGGCCAGCACAAAAATGATGTTGTCC CTTGCGGCAATCCAGGACTGGGAGCTTCGGCACGTCGACTTTGAACAAGC GTACCTGCAGGCGCCCATTGACCATGAGATTTTCGTCGAAATTCCCGTAA AATATCAGGAGTTCCCAGGAGCGGTGGGGTGCCTCGACAAGGCAATATAC GGA
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Coding sequence (CDS) from alignment at H-paniculata_contig53601:3..455-

>mRNA_H-paniculata_contig53601.12782.1 ID=mRNA_H-paniculata_contig53601.12782.1|Name=mRNA_H-paniculata_contig53601.12782.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig53601:3..455- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGTTGTCCCTTGCGGCAATCCAGGACTGGGAGCTTCGGCACGTCGA
CTTTGAACAAGCGTACCTGCAGGCGCCCATTGACCATGAGATTTTCGTCG
AAATTCCCGTAAAATATCAGGAGTTCCCAGGAGCGGTGGGGTGCCTCGAC
AAGGCAATATACGGAATGATGTTGTCCCTTGCGGCAATCCAGGACTGGGA
GCTTCGGCACGTCGACTTTGAACAAGCGTACCTGCAGGCGCCCATTGACC
ATGAGATTTTCGTCGAAATTCCCGTAAAATATCAGGAGTTCCCAGGAGCG
GTGGGGTGCCTCGACAAGGCAATATACGGA
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