prot_H-paniculata_contig5354.12774.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5354.12774.1
Unique Nameprot_H-paniculata_contig5354.12774.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length76
Homology
BLAST of mRNA_H-paniculata_contig5354.12774.1 vs. uniprot
Match: D7G1C0_ECTSI (Lissencephaly-1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C0_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 5.810e-28
Identity = 60/72 (83.33%), Postives = 67/72 (93.06%), Query Frame = 0
Query:    1 MDLEARLEQAQQDLKSGVRPGKDR-SGPGDRVLPRAPAKVSLSGHRNPVTCVALHPLYSVVASASEDATVKV 71
            MDLEARL+QAQQDLKSGVRPG+++ +G  DRVLPRAPAK  L+GHRNPVTCVALHPLYSVVAS+SEDATVKV
Sbjct:   67 MDLEARLDQAQQDLKSGVRPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKV 138          
BLAST of mRNA_H-paniculata_contig5354.12774.1 vs. uniprot
Match: A0A6H5JKZ3_9PHAE (Ge1_WD40 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKZ3_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.480e-27
Identity = 58/72 (80.56%), Postives = 66/72 (91.67%), Query Frame = 0
Query:    1 MDLEARLEQAQQDLKSGVRPGKDR-SGPGDRVLPRAPAKVSLSGHRNPVTCVALHPLYSVVASASEDATVKV 71
            M+LEARL+QAQ DLKSGVRPG+++ +G  DRVLPRAPAK  L+GHRNPVTCVALHPLYSVVAS+SEDATVKV
Sbjct:    1 MELEARLDQAQDDLKSGVRPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKV 72          
BLAST of mRNA_H-paniculata_contig5354.12774.1 vs. uniprot
Match: A0A7S0SXC9_9STRA (Lissencephaly-1 homolog n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SXC9_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.090e-13
Identity = 38/79 (48.10%), Postives = 52/79 (65.82%), Query Frame = 0
Query:    1 MDLEARLEQAQQDLKSGVRPGKDRS---------GPGDRVLPRAPAKVSLSGHRNPVTCVALHPLYSVVASASEDATVK 70
            M+LE +L   Q+ LKSG+      +         G  +R++P+ PAK SLSGHR PVTC+A HP+YS+VAS SED+T+K
Sbjct:   67 MELETQLNDLQKQLKSGIATNGIENDTLKTNATIGENNRLIPKGPAKASLSGHRGPVTCIATHPIYSLVASGSEDSTIK 145          
BLAST of mRNA_H-paniculata_contig5354.12774.1 vs. uniprot
Match: LIS1_BRAFL (Lissencephaly-1 homolog n=2 Tax=Branchiostoma TaxID=7737 RepID=LIS1_BRAFL)

HSP 1 Score: 72.0 bits (175), Expect = 5.050e-13
Identity = 38/71 (53.52%), Postives = 53/71 (74.65%), Query Frame = 0
Query:    1 MDLEARLEQAQQDLKSGVRPGKDRSGPGDRVLPRAPAKVSLSGHRNPVTCVALHPLYSVVASASEDATVKV 71
            MDLEA+L +A+++ +SG    K+RS      +PR PA+ SLSGHR+P+T V  HP+YSV+ SASEDAT+K+
Sbjct:   64 MDLEAKLAEAEKEFQSGGPNKKERSP--SEWIPRPPARYSLSGHRSPITRVLFHPVYSVMVSASEDATIKI 132          
BLAST of mRNA_H-paniculata_contig5354.12774.1 vs. uniprot
Match: T1G6J2_HELRO (Lissencephaly-1 homolog n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1G6J2_HELRO)

HSP 1 Score: 72.0 bits (175), Expect = 5.080e-13
Identity = 37/71 (52.11%), Postives = 53/71 (74.65%), Query Frame = 0
Query:    1 MDLEARLEQAQQDLKSGVRPGKDRSGPGDRVLPRAPAKVSLSGHRNPVTCVALHPLYSVVASASEDATVKV 71
            +DLEARL + +++++ GV PG+DR  P D + PR P K SL+GHR  VT V  HP+++++ SASEDAT+KV
Sbjct:   66 VDLEARLAETEKEIQVGV-PGRDRQNPSDWI-PRPPEKYSLTGHRGSVTRVVFHPVFNIIVSASEDATIKV 134          
BLAST of mRNA_H-paniculata_contig5354.12774.1 vs. uniprot
Match: A0A485LG79_9STRA (Lissencephaly-1 homolog n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A485LG79_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 5.180e-13
Identity = 38/73 (52.05%), Postives = 55/73 (75.34%), Query Frame = 0
Query:    1 MDLEARLEQAQQDLK-SGVRPGKDRSGPG-DRVLPRAPAKVSLSGHRNPVTCVALHPLYSVVASASEDATVKV 71
            M+LE++++Q ++D K  GV   +D +G G D  LPRAP K S+SGHR+P+T V  HP++SVV ++SEDAT+KV
Sbjct:   68 MELESKIQQMEEDAKLGGVVSRRDVTGIGRDAALPRAPPKYSMSGHRSPITSVVFHPIFSVVVTSSEDATIKV 140          
BLAST of mRNA_H-paniculata_contig5354.12774.1 vs. uniprot
Match: A0A225W249_9STRA (Lissencephaly-1 homolog n=2 Tax=Phytophthora TaxID=4783 RepID=A0A225W249_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 5.380e-13
Identity = 40/74 (54.05%), Postives = 54/74 (72.97%), Query Frame = 0
Query:    1 MDLEARLEQAQQDLK-SGVRPGKDRSGPGDRV--LPRAPAKVSLSGHRNPVTCVALHPLYSVVASASEDATVKV 71
            M+LE ++ Q ++++K  GV   +D  G   R   LPRAPAK SL+GHR+P+TCVA HP++SV+ S SEDATVKV
Sbjct:   66 MELETKVAQLEENVKLGGVLSRRDVLGARQRTEFLPRAPAKFSLTGHRSPITCVAFHPVFSVLVSGSEDATVKV 139          
BLAST of mRNA_H-paniculata_contig5354.12774.1 vs. uniprot
Match: A0A8J9VA17_BRALA (PAFAH1B1 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9VA17_BRALA)

HSP 1 Score: 72.0 bits (175), Expect = 5.560e-13
Identity = 38/71 (53.52%), Postives = 53/71 (74.65%), Query Frame = 0
Query:    1 MDLEARLEQAQQDLKSGVRPGKDRSGPGDRVLPRAPAKVSLSGHRNPVTCVALHPLYSVVASASEDATVKV 71
            MDLEA+L +A+++ +SG    K+RS      +PR PA+ SLSGHR+P+T V  HP+YSV+ SASEDAT+K+
Sbjct:  317 MDLEAKLAEAEKEFQSGGPNKKERSP--SEWIPRPPARYSLSGHRSPITRVLFHPVYSVMVSASEDATIKI 385          
BLAST of mRNA_H-paniculata_contig5354.12774.1 vs. uniprot
Match: A0A6A5AET7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AET7_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 6.010e-13
Identity = 38/75 (50.67%), Postives = 55/75 (73.33%), Query Frame = 0
Query:    1 MDLEARLEQAQQDLK-SGVRPGKDRSGPG---DRVLPRAPAKVSLSGHRNPVTCVALHPLYSVVASASEDATVKV 71
            M+LE++++Q ++D K  GV   +D +G G      LPRAP K S+SGHR+P+TCV  HP++SVV ++SEDAT+KV
Sbjct:   71 MELESKIQQLEEDSKLGGVVSRRDVTGIGRDPSTFLPRAPPKYSMSGHRSPITCVVFHPVFSVVVTSSEDATIKV 145          
BLAST of mRNA_H-paniculata_contig5354.12774.1 vs. uniprot
Match: M4BL66_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BL66_HYAAE)

HSP 1 Score: 71.6 bits (174), Expect = 7.120e-13
Identity = 40/74 (54.05%), Postives = 54/74 (72.97%), Query Frame = 0
Query:    1 MDLEARLEQAQQDLK-SGVRPGKDRSGPGDRV--LPRAPAKVSLSGHRNPVTCVALHPLYSVVASASEDATVKV 71
            M+LE ++ Q ++  K  GV   +D  G   R   LPR PAK++L+GHR+P+TCVA HP++SV+ASASEDATVKV
Sbjct:   45 MELETKVAQLEETAKLGGVLSRRDVLGARQRAEFLPRVPAKLTLTGHRSPITCVAFHPVFSVLASASEDATVKV 118          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5354.12774.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1C0_ECTSI5.810e-2883.33Lissencephaly-1 homolog n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKZ3_9PHAE1.480e-2780.56Ge1_WD40 domain-containing protein (Fragment) n=1 ... [more]
A0A7S0SXC9_9STRA1.090e-1348.10Lissencephaly-1 homolog n=1 Tax=Chromulina nebulos... [more]
LIS1_BRAFL5.050e-1353.52Lissencephaly-1 homolog n=2 Tax=Branchiostoma TaxI... [more]
T1G6J2_HELRO5.080e-1352.11Lissencephaly-1 homolog n=1 Tax=Helobdella robusta... [more]
A0A485LG79_9STRA5.180e-1352.05Lissencephaly-1 homolog n=7 Tax=Aphanomyces TaxID=... [more]
A0A225W249_9STRA5.380e-1354.05Lissencephaly-1 homolog n=2 Tax=Phytophthora TaxID... [more]
A0A8J9VA17_BRALA5.560e-1353.52PAFAH1B1 protein n=1 Tax=Branchiostoma lanceolatum... [more]
A0A6A5AET7_9STRA6.010e-1350.67Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
M4BL66_HYAAE7.120e-1354.05Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 34..73
e-value: 2.3E-4
score: 30.5
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 41..76
score: 10.575
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 33..75
e-value: 2.4E-7
score: 31.8
NoneNo IPR availablePANTHERPTHR44129FAMILY NOT NAMEDcoord: 1..72
NoneNo IPR availablePANTHERPTHR44129:SF7coord: 1..72
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 41..76
score: 10.206
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 40..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5354contigH-paniculata_contig5354:4629..4856 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5354.12774.1mRNA_H-paniculata_contig5354.12774.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5354 4629..4859 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5354.12774.1 ID=prot_H-paniculata_contig5354.12774.1|Name=mRNA_H-paniculata_contig5354.12774.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
MDLEARLEQAQQDLKSGVRPGKDRSGPGDRVLPRAPAKVSLSGHRNPVTC
VALHPLYSVVASASEDATVKVRRLGV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf