mRNA_H-paniculata_contig53499.12767.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig53499.12767.1
Unique NamemRNA_H-paniculata_contig53499.12767.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig53499.12767.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA)

HSP 1 Score: 141 bits (355), Expect = 2.580e-37
Identity = 86/216 (39.81%), Postives = 125/216 (57.87%), Query Frame = 1
Query:    1 LNAPVEEELFVKLPPEFS---PFSRDIPFVRRQRKSLYGLKQSGRNWNIILDDFLVGIGLDRSTTDSCLYFSRDDGG*TNLLVAVYVDDLVIAGR-REKVDEFKHNISQRFRMKDLGFISRVLGIEVRHDGPNRTITILQGSYIRDVLKRYGFDECRGVPTPVEGKVKISAPESADKPSEPKSLGAVLGNSTEYRGMVGSVMYASTVTRPDIAYAV 636
            L + +EE+++VK PP +    P   ++  V R RKSLYGLKQSGRNW+  +D +  G G   S+ D CLY      G   L++ +YVDDL+IAG  R+ VD+FK  IS+   MKDL  +  +LG+ ++ +   R + I Q +YI  +L ++   +C+ V TP+EG +        DKP              EY  +VGS++YA+ VTRPDIA+AV
Sbjct:   91 LQSDLEEKIYVKQPPGYEQCGPNGEEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSG-EMLVIVLYVDDLIIAGNSRDMVDDFKQAISKEISMKDLKELDWILGMAIKRNREKRFMEISQTAYIDMMLAKFKMADCKPVLTPMEG-ILTKMNGEGDKPDR------------EYMKLVGSLLYAALVTRPDIAFAV 290          
BLAST of mRNA_H-paniculata_contig53499.12767.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 143 bits (361), Expect = 5.760e-37
Identity = 86/214 (40.19%), Postives = 123/214 (57.48%), Query Frame = 1
Query:    1 LNAPVEEELFVKLPPEFSPF-SRDIPFVRRQRKSLYGLKQSGRNWNIILDDFLVGIGLDRSTTDSCLYFSRDDGG*TNLLVAVYVDDLVIAGR-REKVDEFKHNISQRFRMKDLGFISRVLGIEVRHDGPNRTITILQGSYIRDVLKRYGFDECRGVPTPVEGKVKISAPESADKPSEPKSLGAVLGNSTEYRGMVGSVMYASTVTRPDIAYAV 636
            L + +EE+++VK PP +  + S     V R RKSLYGLKQSGRNW+  +D +  G G   S+ D CLY      G   L++ +YVDDL+I    RE V +FKH IS+ F MKDL  +  +LG+ ++ D   R + I Q +YI  +L ++   +C+ V TP+EG +              K  G  +    EY  +VGS++YA+ VTRPDIA+AV
Sbjct:   91 LQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSG-EILVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTPMEGTLT-------------KMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAV 290          
BLAST of mRNA_H-paniculata_contig53499.12767.1 vs. uniprot
Match: A0A7D9HG25_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HG25_PARCT)

HSP 1 Score: 143 bits (361), Expect = 7.210e-37
Identity = 84/215 (39.07%), Postives = 125/215 (58.14%), Query Frame = 1
Query:    1 LNAPVEEELFVKLPPEFSPFSRD-IPFVRRQRKSLYGLKQSGRNWNIILDDFLVGIGLDRSTTDSCLYFSRDDGG*TNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGFISRVLGIEVRHDGPNRTITILQGSYIRDVLKRYGFDECRGVPTPVEGKVK-ISAPESADKPSEPKSLGAVLGNSTEYRGMVGSVMYASTVTRPDIAYAV 636
            L+AP++ E+F++ P  F   S + +  V R +KSLYGLKQSGRNWN +LD++L+  G  R+  D C+Y  +   G   ++V ++VDDL+IA    +K+ +FK N+  +FRMKDLG IS  LGI  +    N  I + Q  YI+ +L R+G  +C+   TP E + + +S  E  D                 YR +VGS++Y  T TRPDI++ V
Sbjct:  261 LHAPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFVRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKIRQFKENMKSKFRMKDLGEISYFLGISFKQG--NGVIKMNQKRYIQKILDRFGMSDCKPRTTPCEQRFEGMSDSEQVDP--------------RRYREIVGSLIYLMTCTRPDISWVV 457          
BLAST of mRNA_H-paniculata_contig53499.12767.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 144 bits (363), Expect = 3.150e-36
Identity = 85/214 (39.72%), Postives = 124/214 (57.94%), Query Frame = 1
Query:    1 LNAPVEEELFVKLPPEFSPFSRDI-PFVRRQRKSLYGLKQSGRNWNIILDDFLVGIGLDRSTTDSCLYFSRDDGG*TNLLVAVYVDDLVIAGR-REKVDEFKHNISQRFRMKDLGFISRVLGIEVRHDGPNRTITILQGSYIRDVLKRYGFDECRGVPTPVEGKVKISAPESADKPSEPKSLGAVLGNSTEYRGMVGSVMYASTVTRPDIAYAV 636
            L + +EE++++K PP +  +  +    V R RKSLYGLKQSGRNW+  +D +  G GL  S  D CLY      G   L++ +YVDDL+I    R   D+FK +IS+ F MKDL  +  +LG+ ++ +  NRT+ I Q  YI  +L ++G  +C+ V TP+EG +              K  G  +    EY  +VGS++YA+ VTRPDIA+AV
Sbjct:  311 LQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSG-EILVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADCKSVLTPMEGTLT-------------KMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAV 510          
BLAST of mRNA_H-paniculata_contig53499.12767.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT)

HSP 1 Score: 144 bits (364), Expect = 3.500e-36
Identity = 82/218 (37.61%), Postives = 135/218 (61.93%), Query Frame = 1
Query:    1 LNAPVEEELFVKLPPEFSPFSRDIPFVRRQRKSLYGLKQSGRNWNIILDDFLVGIGLDRSTTDSCLYFSRDDGG*TNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGFISRVLGIEVRHDGPNRTITILQGSYIRDVLKRYGFDECRGVPTPVEGKVKISAPESADKPSEPKSLGAVLGNSTEYRGMVGSVMYASTVTRPDIAYAVHQAAR 651
            LN  +E+E+++K P  F    ++   V +  KSLYGLKQS R WN +LD+ L  IG  ++ +D C+Y   +DG     +VA++VDD+++AG+  EK+ + K +I++RF++KD+G +  +LG++V  +  +  + I Q +Y   ++K+YG + C+ V TPV+   K+    SA + SE       L N  EY+  VGS++Y S+ TRPDI +AV+  A+
Sbjct:  877 LNGELEDEVYMKQPEGFEVKGKEH-LVCKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGD--IFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLV---SAIEDSE-------LFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAK 1079          
BLAST of mRNA_H-paniculata_contig53499.12767.1 vs. uniprot
Match: A0A034WM55_BACDO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Bactrocera dorsalis TaxID=27457 RepID=A0A034WM55_BACDO)

HSP 1 Score: 144 bits (363), Expect = 4.290e-36
Identity = 86/218 (39.45%), Postives = 127/218 (58.26%), Query Frame = 1
Query:    1 LNAPVEEELFVKLPPEFSPFSRDIPFVRRQRKSLYGLKQSGRNWNIILDDFLVGIGLDRSTTDSCLYFSRDDGG*TNLLVAVYVDDLVIAGRREKV-DEFKHNISQRFRMKDLGFISRVLGIEVRHDGPNRTITILQGSYIRDVLKRYGFDECRGVPTPVEGKVKISAPESADKPSEPKSLGAVLGNSTEYRGMVGSVMYASTVTRPDIAYAVHQAAR 651
            L+  ++EE+++  P   S F      V + RKSLYGLKQS R WNI L+  LV  GL RS  D C+YF   D     L VAVYVDD+++     K+ ++ K  +S+ F+MKDLG  S VLG+ +  +    T+ I Q +YI DV++R+G +EC  V TP++   K+SA        E + + AV      Y+  +G +++A+ VTRPDI +AV+  +R
Sbjct:  459 LHGELKEEIYMTQP---SGFDDGSGRVCKLRKSLYGLKQSSRVWNIKLNSTLVSFGLQRSNVDQCVYFLVADK--KMLFVAVYVDDVILFANDTKLLNKLKDKLSETFKMKDLGAASSVLGMRIAQNLKEGTLKIDQSAYIADVIRRFGMEECNPVGTPLDVNQKLSAEMCPTNDDEKREMAAV-----PYKQAIGCLLFAAQVTRPDICFAVNLLSR 666          
BLAST of mRNA_H-paniculata_contig53499.12767.1 vs. uniprot
Match: W7T0T3_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0T3_9STRA)

HSP 1 Score: 144 bits (362), Expect = 6.140e-36
Identity = 86/214 (40.19%), Postives = 124/214 (57.94%), Query Frame = 1
Query:    1 LNAPVEEELFVKLPPEFSPF-SRDIPFVRRQRKSLYGLKQSGRNWNIILDDFLVGIGLDRSTTDSCLYFSRDDGG*TNLLVAVYVDDLVIAGR-REKVDEFKHNISQRFRMKDLGFISRVLGIEVRHDGPNRTITILQGSYIRDVLKRYGFDECRGVPTPVEGKVKISAPESADKPSEPKSLGAVLGNSTEYRGMVGSVMYASTVTRPDIAYAV 636
            L + +EE+++VK P  +  + S     V R RKSLYGLKQSGRNW+  +D +  G G   S+ D CLY      G   L++ +YVDDL+I    RE V++FKH IS+ F MKDL  +  +LG+ ++ D   R + I Q +YI  +L ++G  +C+ V TP+EG +              K  G  +    EY  +VGS++YA+ VTRPDIA+AV
Sbjct:  531 LQSDLEEKVYVKQPIGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSG-EILVIVLYVDDLIITSNSREMVNKFKHAISREFSMKDLKELDWILGMAIKRDREKRVMEISQTAYIDMMLAKFGMADCKPVLTPMEGTLT-------------KMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAV 730          
BLAST of mRNA_H-paniculata_contig53499.12767.1 vs. uniprot
Match: A0A6S7HLY2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HLY2_PARCT)

HSP 1 Score: 142 bits (359), Expect = 6.610e-36
Identity = 83/215 (38.60%), Postives = 124/215 (57.67%), Query Frame = 1
Query:    1 LNAPVEEELFVKLPPEFSPFSRD-IPFVRRQRKSLYGLKQSGRNWNIILDDFLVGIGLDRSTTDSCLYFSRDDGG*TNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGFISRVLGIEVRHDGPNRTITILQGSYIRDVLKRYGFDECRGVPTPVEGKVK-ISAPESADKPSEPKSLGAVLGNSTEYRGMVGSVMYASTVTRPDIAYAV 636
            L+ P++ E+F++ P  F   S + +  V R +KSLYGLKQSGRNWN +LD++L+  G  R+  D C+Y  +   G   ++V ++VDDL+IA    +K+ +FK N+  +FRMKDLG IS  LGI  +    N  I + Q  YI+ +L R+G  +C+   TP E + + +S  E  D                 YR +VGS++Y  T TRPDI++ V
Sbjct:  286 LHVPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFIRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKISQFKENMKSKFRMKDLGEISYFLGISFKQG--NGVIKMNQKRYIQKILDRFGMSDCKPRTTPCEQRFEGMSDSEQVDP--------------RRYREIVGSLIYLMTCTRPDISWVV 482          
BLAST of mRNA_H-paniculata_contig53499.12767.1 vs. uniprot
Match: A0A146H3U8_MYCCL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H3U8_MYCCL)

HSP 1 Score: 140 bits (353), Expect = 1.410e-35
Identity = 84/215 (39.07%), Postives = 121/215 (56.28%), Query Frame = 1
Query:    1 LNAPVEEELFVKLPPEFSPFSRDIPFVRRQRKSLYGLKQSGRNWNIILDDFLVGIGLDRSTTDSCLYFSRDDGG*TNLLVAVYVDDLVI-AGRREKVDEFKHNISQRFRMKDLGFISRVLGIEVRHDGPNRTITILQGSYIRDVLKRYGFDECRGVPTPV--EGKVKISAPESADKPSEPKSLGAVLGNSTEYRGMVGSVMYASTVTRPDIAYAV 636
            LN  ++EE+F++ PP F   +     V R +KSLYGL QSGR WN   D  +  IGL ++  D+C+Y+   DG    + V V+VDDL+I A  +++ +  K  +   F MKDLG   +++GIEV  D    T+T+ Q  YI  +L RYGF +  GV TP+  +   K+        P+ P +         EY+ M+G +MYA+  TRPDIAYAV
Sbjct:   93 LNGELKEEVFMQQPPGFEDGTGR---VWRLKKSLYGLHQSGREWNREFDQKVQTIGLTKTAADNCVYYRERDG--ERVWVTVWVDDLIILATSKDEGERVKKELDTLFEMKDLGEPRKIIGIEVTRDRSAGTVTLSQRHYIESLLDRYGFSDLNGVSTPLVPDANTKMRQLPKDAPPTAPSAR-------AEYQSMIGGLMYAAICTRPDIAYAV 295          
BLAST of mRNA_H-paniculata_contig53499.12767.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT)

HSP 1 Score: 142 bits (357), Expect = 1.640e-35
Identity = 79/219 (36.07%), Postives = 134/219 (61.19%), Query Frame = 1
Query:    1 LNAPVEEELFVKLPPEFSPFSRDIPFVRRQRKSLYGLKQSGRNWNIILDDFLVGIGLDRSTTDSCLYFSRDDGG*TNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGFISRVLGIEVRHDGPNRTITILQGSYIRDVLKRYGFDECRGVPTPVEGKVK-ISAPESADKPSEPKSLGAVLGNSTEYRGMVGSVMYASTVTRPDIAYAVHQAAR 651
            LN  +E+E+++K P  F    ++     +  KSLYGLKQS R WN +LD+ L  IG  ++ +D C+Y   +DG     +VA++VDD+++AG+  EK+ + K +I++RF++KD+G +  +LG++V  +  +  + I Q +Y   ++K+YG + C+ V TPV+   K +SA E ++           L N  E++  VGS++Y S+ TRPDI +AV+  A+
Sbjct:  263 LNGELEDEVYMKQPEGFEVKGKEH-LACKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGN--IFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSE-----------LFNKEEHQSAVGSLLYLSSATRPDITFAVNNVAK 465          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53499.12767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TII5_9STRA2.580e-3739.81Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7TCB8_9STRA5.760e-3740.19Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]
A0A7D9HG25_PARCT7.210e-3739.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7TJ26_9STRA3.150e-3639.72Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A6S7HEL0_PARCT3.500e-3637.61Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A034WM55_BACDO4.290e-3639.45Retrovirus-related Pol polyprotein from transposon... [more]
W7T0T3_9STRA6.140e-3640.19Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A6S7HLY2_PARCT6.610e-3638.60Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A146H3U8_MYCCL1.410e-3539.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9HZ03_PARCT1.640e-3536.07Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53499contigH-paniculata_contig53499:295..990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue1.3e-11
Seed eggNOG ortholog164328.Phyra71113
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3Q8Z1@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size651
Cds size327
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53499.12767.1prot_H-paniculata_contig53499.12767.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig53499 295..666 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930545.0568717-CDS-H-paniculata_contig53499:294..3941622930545.0568717-CDS-H-paniculata_contig53499:294..394Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53499 295..394 -
1691481341.8219893-CDS-H-paniculata_contig53499:294..3941691481341.8219893-CDS-H-paniculata_contig53499:294..394Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53499 295..394 -
1622930545.0701933-CDS-H-paniculata_contig53499:439..6661622930545.0701933-CDS-H-paniculata_contig53499:439..666Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53499 440..666 -
1691481341.8308613-CDS-H-paniculata_contig53499:439..6661691481341.8308613-CDS-H-paniculata_contig53499:439..666Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53499 440..666 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930545.086206-UTR-H-paniculata_contig53499:666..9901622930545.086206-UTR-H-paniculata_contig53499:666..990Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig53499 667..990 -
1691481341.8381174-UTR-H-paniculata_contig53499:666..9901691481341.8381174-UTR-H-paniculata_contig53499:666..990Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig53499 667..990 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig53499.12767.1

>prot_H-paniculata_contig53499.12767.1 ID=prot_H-paniculata_contig53499.12767.1|Name=mRNA_H-paniculata_contig53499.12767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MKDLGFISRVLGIEVRHDGPNRTITILQGSYIRDVLKRYGFDECRGVPTP
VEGKVKISAPESADKPSEPKSLGAVLGNSTEYRGMVGSVMYASTVTRPDI
AYAVHQAAR
back to top

mRNA from alignment at H-paniculata_contig53499:295..990-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig53499.12767.1 ID=mRNA_H-paniculata_contig53499.12767.1|Name=mRNA_H-paniculata_contig53499.12767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=696bp|location=Sequence derived from alignment at H-paniculata_contig53499:295..990- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGAACGCCCCGGTAGAAGAAGAGCTGTTTGTTAAGCTACCCCCCGAGTT TTCCCCTTTCTCCCGAGACATACCGTTTGTGCGCCGCCAACGTAAAAGCC TGTACGGCCTCAAGCAGAGCGGCCGAAACTGGAATATCATTCTTGACGAT TTTCTTGTTGGGATAGGACTCGACCGTTCCACTACCGACTCATGCTTGTA CTTTTCCCGCGACGATGGGGGATAAACAAACCTTCTGGTGGCCGTCTATG TTGACGACCTGGTCATTGCTGGCCGTCGTGAGAAAGTAGACGAGTTCAAG CATAACATAAGTCAGCGTTTTAGGATGAAAGACTTGGGCTTTATCTCGCG CGTGTTGGGAATAGAAGTACGACATGACGGCCCTAATCGTACCATAACCA TCTTGCAGGGTAGCTACATCCGCGATGTACTAAAAAGATATGGTTTTGAT GAGTGTCGAGGAGTACCCACCCCTGTAGAGGGAAAAGTAAAGATTTCGGC ACCCGAGTCGGCGGACAAGCCTTCCGAACCGAAGTCACTTGGAGCTGTAC TGTCGGGCATAGGCGCAGGAGAACAAGAAATCAGCAAAGGAAGAAGTGGC AATTCAACTGAATACAGAGGCATGGTAGGATCAGTCATGTACGCCTCGAC AGTAACTAGACCTGATATAGCATACGCGGTACACCAAGCAGCACGT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig53499:295..990-

>mRNA_H-paniculata_contig53499.12767.1 ID=mRNA_H-paniculata_contig53499.12767.1|Name=mRNA_H-paniculata_contig53499.12767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig53499:295..990- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAGACTTGGGCTTTATCTCGCGCGTGTTGGGAATAGAAGTACGACA
TGACGGCCCTAATCGTACCATAACCATCTTGCAGGGTAGCTACATCCGCG
ATGTACTAAAAAGATATGGTTTTGATGAGTGTCGAGGAGTACCCACCCCT
GTAGAGGGAAAAGTAAAGATTTCGGCACCCGAGTCGGCGGACAAGCCTTC
CGAACCGAAGTCACTTGGAGCTGTACTATGAAAGACTTGGGCTTTATCTC
GCGCGTGTTGGGAATAGAAGTACGACATGACGGCCCTAATCGTACCATAA
CCATCTTGCAGGGTAGCTACATCCGCGATGTACTAAAAAGATATGGTTTT
GATGAGTGTCGAGGAGTACCCACCCCTGTAGAGGGAAAAGTAAAGATTTC
GGCACCCGAGTCGGCGGACAAGCCTTCCGAACCGAAGTCACTTGGAGCTG
TACTTGGCAATTCAACTGAATACAGAGGCATGGTAGGATCAGTCATGTAC
GCCTCGACAGTAACTAGACCTGATATAGCATACGCGGTACACCAAGCAGC
ACGTTGGCAATTCAACTGAATACAGAGGCATGGTAGGATCAGTCATGTAC
GCCTCGACAGTAACTAGACCTGATATAGCATACGCGGTACACCAAGCAGC
ACGT
back to top