mRNA_H-paniculata_contig53499.12767.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig53499.12767.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA) HSP 1 Score: 141 bits (355), Expect = 2.580e-37 Identity = 86/216 (39.81%), Postives = 125/216 (57.87%), Query Frame = 1
Query: 1 LNAPVEEELFVKLPPEFS---PFSRDIPFVRRQRKSLYGLKQSGRNWNIILDDFLVGIGLDRSTTDSCLYFSRDDGG*TNLLVAVYVDDLVIAGR-REKVDEFKHNISQRFRMKDLGFISRVLGIEVRHDGPNRTITILQGSYIRDVLKRYGFDECRGVPTPVEGKVKISAPESADKPSEPKSLGAVLGNSTEYRGMVGSVMYASTVTRPDIAYAV 636
L + +EE+++VK PP + P ++ V R RKSLYGLKQSGRNW+ +D + G G S+ D CLY G L++ +YVDDL+IAG R+ VD+FK IS+ MKDL + +LG+ ++ + R + I Q +YI +L ++ +C+ V TP+EG + DKP EY +VGS++YA+ VTRPDIA+AV
Sbjct: 91 LQSDLEEKIYVKQPPGYEQCGPNGEEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSG-EMLVIVLYVDDLIIAGNSRDMVDDFKQAISKEISMKDLKELDWILGMAIKRNREKRFMEISQTAYIDMMLAKFKMADCKPVLTPMEG-ILTKMNGEGDKPDR------------EYMKLVGSLLYAALVTRPDIAFAV 290
BLAST of mRNA_H-paniculata_contig53499.12767.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA) HSP 1 Score: 143 bits (361), Expect = 5.760e-37 Identity = 86/214 (40.19%), Postives = 123/214 (57.48%), Query Frame = 1
Query: 1 LNAPVEEELFVKLPPEFSPF-SRDIPFVRRQRKSLYGLKQSGRNWNIILDDFLVGIGLDRSTTDSCLYFSRDDGG*TNLLVAVYVDDLVIAGR-REKVDEFKHNISQRFRMKDLGFISRVLGIEVRHDGPNRTITILQGSYIRDVLKRYGFDECRGVPTPVEGKVKISAPESADKPSEPKSLGAVLGNSTEYRGMVGSVMYASTVTRPDIAYAV 636
L + +EE+++VK PP + + S V R RKSLYGLKQSGRNW+ +D + G G S+ D CLY G L++ +YVDDL+I RE V +FKH IS+ F MKDL + +LG+ ++ D R + I Q +YI +L ++ +C+ V TP+EG + K G + EY +VGS++YA+ VTRPDIA+AV
Sbjct: 91 LQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSG-EILVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTPMEGTLT-------------KMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAV 290
BLAST of mRNA_H-paniculata_contig53499.12767.1 vs. uniprot
Match: A0A7D9HG25_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HG25_PARCT) HSP 1 Score: 143 bits (361), Expect = 7.210e-37 Identity = 84/215 (39.07%), Postives = 125/215 (58.14%), Query Frame = 1
Query: 1 LNAPVEEELFVKLPPEFSPFSRD-IPFVRRQRKSLYGLKQSGRNWNIILDDFLVGIGLDRSTTDSCLYFSRDDGG*TNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGFISRVLGIEVRHDGPNRTITILQGSYIRDVLKRYGFDECRGVPTPVEGKVK-ISAPESADKPSEPKSLGAVLGNSTEYRGMVGSVMYASTVTRPDIAYAV 636
L+AP++ E+F++ P F S + + V R +KSLYGLKQSGRNWN +LD++L+ G R+ D C+Y + G ++V ++VDDL+IA +K+ +FK N+ +FRMKDLG IS LGI + N I + Q YI+ +L R+G +C+ TP E + + +S E D YR +VGS++Y T TRPDI++ V
Sbjct: 261 LHAPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFVRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKIRQFKENMKSKFRMKDLGEISYFLGISFKQG--NGVIKMNQKRYIQKILDRFGMSDCKPRTTPCEQRFEGMSDSEQVDP--------------RRYREIVGSLIYLMTCTRPDISWVV 457
BLAST of mRNA_H-paniculata_contig53499.12767.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA) HSP 1 Score: 144 bits (363), Expect = 3.150e-36 Identity = 85/214 (39.72%), Postives = 124/214 (57.94%), Query Frame = 1
Query: 1 LNAPVEEELFVKLPPEFSPFSRDI-PFVRRQRKSLYGLKQSGRNWNIILDDFLVGIGLDRSTTDSCLYFSRDDGG*TNLLVAVYVDDLVIAGR-REKVDEFKHNISQRFRMKDLGFISRVLGIEVRHDGPNRTITILQGSYIRDVLKRYGFDECRGVPTPVEGKVKISAPESADKPSEPKSLGAVLGNSTEYRGMVGSVMYASTVTRPDIAYAV 636
L + +EE++++K PP + + + V R RKSLYGLKQSGRNW+ +D + G GL S D CLY G L++ +YVDDL+I R D+FK +IS+ F MKDL + +LG+ ++ + NRT+ I Q YI +L ++G +C+ V TP+EG + K G + EY +VGS++YA+ VTRPDIA+AV
Sbjct: 311 LQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSG-EILVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADCKSVLTPMEGTLT-------------KMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAV 510
BLAST of mRNA_H-paniculata_contig53499.12767.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT) HSP 1 Score: 144 bits (364), Expect = 3.500e-36 Identity = 82/218 (37.61%), Postives = 135/218 (61.93%), Query Frame = 1
Query: 1 LNAPVEEELFVKLPPEFSPFSRDIPFVRRQRKSLYGLKQSGRNWNIILDDFLVGIGLDRSTTDSCLYFSRDDGG*TNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGFISRVLGIEVRHDGPNRTITILQGSYIRDVLKRYGFDECRGVPTPVEGKVKISAPESADKPSEPKSLGAVLGNSTEYRGMVGSVMYASTVTRPDIAYAVHQAAR 651
LN +E+E+++K P F ++ V + KSLYGLKQS R WN +LD+ L IG ++ +D C+Y +DG +VA++VDD+++AG+ EK+ + K +I++RF++KD+G + +LG++V + + + I Q +Y ++K+YG + C+ V TPV+ K+ SA + SE L N EY+ VGS++Y S+ TRPDI +AV+ A+
Sbjct: 877 LNGELEDEVYMKQPEGFEVKGKEH-LVCKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGD--IFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLV---SAIEDSE-------LFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAK 1079
BLAST of mRNA_H-paniculata_contig53499.12767.1 vs. uniprot
Match: A0A034WM55_BACDO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Bactrocera dorsalis TaxID=27457 RepID=A0A034WM55_BACDO) HSP 1 Score: 144 bits (363), Expect = 4.290e-36 Identity = 86/218 (39.45%), Postives = 127/218 (58.26%), Query Frame = 1
Query: 1 LNAPVEEELFVKLPPEFSPFSRDIPFVRRQRKSLYGLKQSGRNWNIILDDFLVGIGLDRSTTDSCLYFSRDDGG*TNLLVAVYVDDLVIAGRREKV-DEFKHNISQRFRMKDLGFISRVLGIEVRHDGPNRTITILQGSYIRDVLKRYGFDECRGVPTPVEGKVKISAPESADKPSEPKSLGAVLGNSTEYRGMVGSVMYASTVTRPDIAYAVHQAAR 651
L+ ++EE+++ P S F V + RKSLYGLKQS R WNI L+ LV GL RS D C+YF D L VAVYVDD+++ K+ ++ K +S+ F+MKDLG S VLG+ + + T+ I Q +YI DV++R+G +EC V TP++ K+SA E + + AV Y+ +G +++A+ VTRPDI +AV+ +R
Sbjct: 459 LHGELKEEIYMTQP---SGFDDGSGRVCKLRKSLYGLKQSSRVWNIKLNSTLVSFGLQRSNVDQCVYFLVADK--KMLFVAVYVDDVILFANDTKLLNKLKDKLSETFKMKDLGAASSVLGMRIAQNLKEGTLKIDQSAYIADVIRRFGMEECNPVGTPLDVNQKLSAEMCPTNDDEKREMAAV-----PYKQAIGCLLFAAQVTRPDICFAVNLLSR 666
BLAST of mRNA_H-paniculata_contig53499.12767.1 vs. uniprot
Match: W7T0T3_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0T3_9STRA) HSP 1 Score: 144 bits (362), Expect = 6.140e-36 Identity = 86/214 (40.19%), Postives = 124/214 (57.94%), Query Frame = 1
Query: 1 LNAPVEEELFVKLPPEFSPF-SRDIPFVRRQRKSLYGLKQSGRNWNIILDDFLVGIGLDRSTTDSCLYFSRDDGG*TNLLVAVYVDDLVIAGR-REKVDEFKHNISQRFRMKDLGFISRVLGIEVRHDGPNRTITILQGSYIRDVLKRYGFDECRGVPTPVEGKVKISAPESADKPSEPKSLGAVLGNSTEYRGMVGSVMYASTVTRPDIAYAV 636
L + +EE+++VK P + + S V R RKSLYGLKQSGRNW+ +D + G G S+ D CLY G L++ +YVDDL+I RE V++FKH IS+ F MKDL + +LG+ ++ D R + I Q +YI +L ++G +C+ V TP+EG + K G + EY +VGS++YA+ VTRPDIA+AV
Sbjct: 531 LQSDLEEKVYVKQPIGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSG-EILVIVLYVDDLIITSNSREMVNKFKHAISREFSMKDLKELDWILGMAIKRDREKRVMEISQTAYIDMMLAKFGMADCKPVLTPMEGTLT-------------KMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAV 730
BLAST of mRNA_H-paniculata_contig53499.12767.1 vs. uniprot
Match: A0A6S7HLY2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HLY2_PARCT) HSP 1 Score: 142 bits (359), Expect = 6.610e-36 Identity = 83/215 (38.60%), Postives = 124/215 (57.67%), Query Frame = 1
Query: 1 LNAPVEEELFVKLPPEFSPFSRD-IPFVRRQRKSLYGLKQSGRNWNIILDDFLVGIGLDRSTTDSCLYFSRDDGG*TNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGFISRVLGIEVRHDGPNRTITILQGSYIRDVLKRYGFDECRGVPTPVEGKVK-ISAPESADKPSEPKSLGAVLGNSTEYRGMVGSVMYASTVTRPDIAYAV 636
L+ P++ E+F++ P F S + + V R +KSLYGLKQSGRNWN +LD++L+ G R+ D C+Y + G ++V ++VDDL+IA +K+ +FK N+ +FRMKDLG IS LGI + N I + Q YI+ +L R+G +C+ TP E + + +S E D YR +VGS++Y T TRPDI++ V
Sbjct: 286 LHVPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFIRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKISQFKENMKSKFRMKDLGEISYFLGISFKQG--NGVIKMNQKRYIQKILDRFGMSDCKPRTTPCEQRFEGMSDSEQVDP--------------RRYREIVGSLIYLMTCTRPDISWVV 482
BLAST of mRNA_H-paniculata_contig53499.12767.1 vs. uniprot
Match: A0A146H3U8_MYCCL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H3U8_MYCCL) HSP 1 Score: 140 bits (353), Expect = 1.410e-35 Identity = 84/215 (39.07%), Postives = 121/215 (56.28%), Query Frame = 1
Query: 1 LNAPVEEELFVKLPPEFSPFSRDIPFVRRQRKSLYGLKQSGRNWNIILDDFLVGIGLDRSTTDSCLYFSRDDGG*TNLLVAVYVDDLVI-AGRREKVDEFKHNISQRFRMKDLGFISRVLGIEVRHDGPNRTITILQGSYIRDVLKRYGFDECRGVPTPV--EGKVKISAPESADKPSEPKSLGAVLGNSTEYRGMVGSVMYASTVTRPDIAYAV 636
LN ++EE+F++ PP F + V R +KSLYGL QSGR WN D + IGL ++ D+C+Y+ DG + V V+VDDL+I A +++ + K + F MKDLG +++GIEV D T+T+ Q YI +L RYGF + GV TP+ + K+ P+ P + EY+ M+G +MYA+ TRPDIAYAV
Sbjct: 93 LNGELKEEVFMQQPPGFEDGTGR---VWRLKKSLYGLHQSGREWNREFDQKVQTIGLTKTAADNCVYYRERDG--ERVWVTVWVDDLIILATSKDEGERVKKELDTLFEMKDLGEPRKIIGIEVTRDRSAGTVTLSQRHYIESLLDRYGFSDLNGVSTPLVPDANTKMRQLPKDAPPTAPSAR-------AEYQSMIGGLMYAAICTRPDIAYAV 295
BLAST of mRNA_H-paniculata_contig53499.12767.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT) HSP 1 Score: 142 bits (357), Expect = 1.640e-35 Identity = 79/219 (36.07%), Postives = 134/219 (61.19%), Query Frame = 1
Query: 1 LNAPVEEELFVKLPPEFSPFSRDIPFVRRQRKSLYGLKQSGRNWNIILDDFLVGIGLDRSTTDSCLYFSRDDGG*TNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGFISRVLGIEVRHDGPNRTITILQGSYIRDVLKRYGFDECRGVPTPVEGKVK-ISAPESADKPSEPKSLGAVLGNSTEYRGMVGSVMYASTVTRPDIAYAVHQAAR 651
LN +E+E+++K P F ++ + KSLYGLKQS R WN +LD+ L IG ++ +D C+Y +DG +VA++VDD+++AG+ EK+ + K +I++RF++KD+G + +LG++V + + + I Q +Y ++K+YG + C+ V TPV+ K +SA E ++ L N E++ VGS++Y S+ TRPDI +AV+ A+
Sbjct: 263 LNGELEDEVYMKQPEGFEVKGKEH-LACKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGN--IFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSE-----------LFNKEEHQSAVGSLLYLSSATRPDITFAVNNVAK 465 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53499.12767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig53499.12767.1 >prot_H-paniculata_contig53499.12767.1 ID=prot_H-paniculata_contig53499.12767.1|Name=mRNA_H-paniculata_contig53499.12767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp MKDLGFISRVLGIEVRHDGPNRTITILQGSYIRDVLKRYGFDECRGVPTPback to top mRNA from alignment at H-paniculata_contig53499:295..990- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig53499.12767.1 ID=mRNA_H-paniculata_contig53499.12767.1|Name=mRNA_H-paniculata_contig53499.12767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=696bp|location=Sequence derived from alignment at H-paniculata_contig53499:295..990- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig53499:295..990- >mRNA_H-paniculata_contig53499.12767.1 ID=mRNA_H-paniculata_contig53499.12767.1|Name=mRNA_H-paniculata_contig53499.12767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig53499:295..990- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |