mRNA_H-paniculata_contig53478.12763.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig53478.12763.1
Unique NamemRNA_H-paniculata_contig53478.12763.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig53478.12763.1 vs. uniprot
Match: D7G0Z3_ECTSI (Putative: beta-tubulin folding cofactor E n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z3_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 2.620e-23
Identity = 56/82 (68.29%), Postives = 63/82 (76.83%), Query Frame = 1
Query:   16 RYRELWKLHGDAMVHSASGGAGAGVAVSNLAANMAQVTLTSLVAASCTVEPAKKRLPAS-MTVGKLKQLCRRLFKVDTDQQV 258
            RYRELW LHGD+M     G AG G    ++AA M QVTL SL A SCTVEP KK+LPAS +TVGKLKQLC+RLFK+DTDQQV
Sbjct:  503 RYRELWALHGDSMAFGGRG-AGLGQQGGSMAAGMVQVTLISLAAVSCTVEPVKKKLPASSLTVGKLKQLCKRLFKLDTDQQV 583          
BLAST of mRNA_H-paniculata_contig53478.12763.1 vs. uniprot
Match: A0A6H5L3Q3_9PHAE (CAP-Gly domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Q3_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 7.660e-14
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 1
Query:  121 QVTLTSLVAASCTVEPAKKRLPAS-MTVGKLKQLCRRLFKVDTDQQV 258
            QVTL SL A SCTVEP KK+LPAS +TVGKLKQLC+RLFKVDTDQQV
Sbjct:  490 QVTLISLAAVSCTVEPIKKKLPASSLTVGKLKQLCKRLFKVDTDQQV 536          
BLAST of mRNA_H-paniculata_contig53478.12763.1 vs. uniprot
Match: A0A7S1C881_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C881_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.550e-10
Identity = 37/85 (43.53%), Postives = 54/85 (63.53%), Query Frame = 1
Query:    1 LFDRGRYRELWKLHGDAMVHSASGGAGAGVAVSNLAANMAQVTLTSLVAASCTVEPAKKRLPASMTVGKLKQLCRRLFKVDTDQQ 255
            L +  RY +L   HG  +V +A+   GA      LAA++ +VTL S+ AASCTVEP ++RLP SMT+G LK + +++FK +   Q
Sbjct:  500 LAEHPRYFDLLDEHGHVLVAAAADAGGA-----TLAASVVKVTLRSMAAASCTVEPVERRLPLSMTIGSLKVMMQKIFKCELSAQ 579          
BLAST of mRNA_H-paniculata_contig53478.12763.1 vs. uniprot
Match: A0A7S2Y046_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y046_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 3.940e-10
Identity = 33/84 (39.29%), Postives = 55/84 (65.48%), Query Frame = 1
Query:   16 RYRELWKLHGDAMVHSASGGAGAGVAVSNLAANMAQVTLTSLVAASCTVEPAKKRLPASMTVGKLKQLCRRLFKVDTDQQVCMY 267
            R+REL+  H   +++   G   +G    ++A+++ +VTL SLVA+S + +P  KRL  ++T+GKLKQ+C+ LF V  D+QV  +
Sbjct:   51 RFRELYDQHAHKLLNFGDGSNISGTG--SIASSLIEVTLQSLVASSTSFDPVSKRLSITLTIGKLKQMCKGLFGVPADEQVLYF 132          
BLAST of mRNA_H-paniculata_contig53478.12763.1 vs. uniprot
Match: A0A7S2M1X1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M1X1_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.580e-8
Identity = 31/81 (38.27%), Postives = 50/81 (61.73%), Query Frame = 1
Query:   16 RYRELWKLHGDAMVHSASGGAGAGVAVSNLAANMAQVTLTSLVAASCTVEPAKKRLPASMTVGKLKQLCRRLFKVDTDQQV 258
            ++  L + H D M+  A+ G G+     N+   +  VT+ S+ AASC +EP +KRLP S+ VG++K +C + F+VD D Q+
Sbjct:  216 QFNVLLEKHKDTMLSLANAGCGSSNQ-GNIGEEIINVTIRSMAAASCDMEPLRKRLPRSLKVGRIKTMCAKYFRVDIDLQM 295          
BLAST of mRNA_H-paniculata_contig53478.12763.1 vs. uniprot
Match: A0A7R9WYB4_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WYB4_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 5.590e-8
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   16 RYRELWKLHGDAMV---HSASGGAGAGVAVSNLAANMAQVTLTSLVAASCTVEPAKKRLPASMTVGKLKQLCRRLFKVDTD 249
            +Y  L   H D +    +S +GGA +G   S L+A +A + + S+ A+SC++EP  +RLP S+TVG+LK LC R F +DTD
Sbjct:   70 QYDTLKDEHRDVIAAASNSTAGGA-SGSGGSTLSATVANLMVRSMAASSCSMEPLVRRLPGSLTVGRLKALCSRYFGLDTD 149          
BLAST of mRNA_H-paniculata_contig53478.12763.1 vs. uniprot
Match: A0A448Z797_9STRA (CAP-Gly domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z797_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 7.220e-8
Identity = 35/83 (42.17%), Postives = 48/83 (57.83%), Query Frame = 1
Query:    1 LFDRGRYRELWKLHGDAMVHSASGGAGAGVAVSNLAANMAQVTLTSLVAASCTVEPAKKRLPASMTVGKLKQLCRRLFKVDTD 249
            L D  RY EL + H         G +G G    +LAA++  +T+ S+ AASCT++P  +RLP SMTV + + LC R F VD D
Sbjct:  452 LDDHPRYPELMEKHNKLAALLTKGTSGGG----SLAASVYNLTIRSMAAASCTMDPVVRRLPGSMTVERTRALCSRAFGVDYD 530          
BLAST of mRNA_H-paniculata_contig53478.12763.1 vs. uniprot
Match: B8C5G5_THAPS (CAP-Gly domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5G5_THAPS)

HSP 1 Score: 57.4 bits (137), Expect = 1.300e-7
Identity = 32/82 (39.02%), Postives = 49/82 (59.76%), Query Frame = 1
Query:   16 RYRELWKLHGDAMVHSASGGAGAGVAVSN-LAANMAQVTLTSLVAASCTVEPAKKRLPASMTVGKLKQLCRRLFKVDTDQQV 258
            R++ L   H D M+   S  AG   + S  +  ++  VT+ S+ A+SC VEP +KRLP S+ VG++K +C R F +D D Q+
Sbjct:  456 RFKHLMTKHKDTMMALNSSAAGTDSSGSGKIGEDVINVTIRSMAASSCDVEPLQKRLPRSLQVGRIKAMCARAFGLDIDLQI 537          
BLAST of mRNA_H-paniculata_contig53478.12763.1 vs. uniprot
Match: A0A7S4UL71_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UL71_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.750e-7
Identity = 32/78 (41.03%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   16 RYRELWKLHGDAMVHSASGGAGAGVAVSNLAANMAQVTLTSLVAASCTVEPAKKRLPASMTVGKLKQLCRRLFKVDTD 249
            R+ EL   H D+M+   S  +  G   +N+A +   VT+ S+ A+SC +EP +KRLP ++ VG+LK LC R F +D D
Sbjct:  401 RFDELMNKHKDSMLSIQS--SANGNTRNNIANDAINVTVRSMAASSCAMEPMRKRLPGTLKVGRLKILCSRAFGIDVD 476          
BLAST of mRNA_H-paniculata_contig53478.12763.1 vs. uniprot
Match: A0A7S4QTJ8_9STRA (Hypothetical protein n=5 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QTJ8_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.790e-7
Identity = 32/78 (41.03%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   16 RYRELWKLHGDAMVHSASGGAGAGVAVSNLAANMAQVTLTSLVAASCTVEPAKKRLPASMTVGKLKQLCRRLFKVDTD 249
            R+ EL   H D+M+   S  +  G   +N+A +   VT+ S+ A+SC +EP +KRLP ++ VG+LK LC R F +D D
Sbjct:  521 RFDELMNKHKDSMLSIQS--SANGNTRNNIANDAINVTVRSMAASSCAMEPMRKRLPGTLKVGRLKILCSRAFGIDVD 596          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53478.12763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7G0Z3_ECTSI2.620e-2368.29Putative: beta-tubulin folding cofactor E n=1 Tax=... [more]
A0A6H5L3Q3_9PHAE7.660e-1482.98CAP-Gly domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S1C881_9STRA2.550e-1043.53Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S2Y046_9STRA3.940e-1039.29Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa... [more]
A0A7S2M1X1_9STRA2.580e-838.27Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7R9WYB4_9STRA5.590e-843.21Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A448Z797_9STRA7.220e-842.17CAP-Gly domain-containing protein n=1 Tax=Pseudo-n... [more]
B8C5G5_THAPS1.300e-739.02CAP-Gly domain-containing protein n=1 Tax=Thalassi... [more]
A0A7S4UL71_9STRA1.750e-741.03Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4QTJ8_9STRA1.790e-741.03Hypothetical protein n=5 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53478contigH-paniculata_contig53478:769..1035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue2.8e-20
Seed eggNOG ortholog2880.D7G0Z3
Preferred nameTBCE
KEGG koko:K21768
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0000278,GO:0000902,GO:0000904,GO:0003008,GO:0003012,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005874,GO:0006457,GO:0006996,GO:0007010,GO:0007017,GO:0007021,GO:0007023,GO:0007049,GO:0007051,GO:0007052,GO:0007154,GO:0007267,GO:0007268,GO:0007274,GO:0007275,GO:0007399,GO:0007409,GO:0007422,GO:0007610,GO:0007626,GO:0008092,GO:0008150,GO:0008344,GO:0008582,GO:0009653,GO:0009791,GO:0009987,GO:0014889,GO:0015630,GO:0015631,GO:0016043,GO:0022008,GO:0022402,GO:0022607,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0030534,GO:0031109,GO:0031175,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0032991,GO:0034622,GO:0040007,GO:0040008,GO:0043014,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043500,GO:0043933,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046785,GO:0048468,GO:0048589,GO:0048638,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048934,GO:0048935,GO:0048936,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050896,GO:0051082,GO:0051087,GO:0051128,GO:0051239,GO:0051258,GO:0051960,GO:0051963,GO:0061564,GO:0065003,GO:0065007,GO:0065008,GO:0071840,GO:0097435,GO:0098916,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099536,GO:0099537,GO:0120036,GO:0120039,GO:1902850,GO:1903047,GO:1904396,GO:1990727,GO:2000026
EggNOG free text desc.post-chaperonin tubulin folding pathway
EggNOG OGsKOG3207@1,KOG3207@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons1
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930544.4203672-CDS-H-paniculata_contig53478:768..10351622930544.4203672-CDS-H-paniculata_contig53478:768..1035Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53478 769..1035 +
1691481341.521893-CDS-H-paniculata_contig53478:768..10351691481341.521893-CDS-H-paniculata_contig53478:768..1035Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53478 769..1035 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53478.12763.1prot_H-paniculata_contig53478.12763.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig53478 769..1035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig53478.12763.1

>prot_H-paniculata_contig53478.12763.1 ID=prot_H-paniculata_contig53478.12763.1|Name=mRNA_H-paniculata_contig53478.12763.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
LFDRGRYRELWKLHGDAMVHSASGGAGAGVAVSNLAANMAQVTLTSLVAA
SCTVEPAKKRLPASMTVGKLKQLCRRLFKVDTDQQVCMY
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mRNA from alignment at H-paniculata_contig53478:769..1035+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig53478.12763.1 ID=mRNA_H-paniculata_contig53478.12763.1|Name=mRNA_H-paniculata_contig53478.12763.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=267bp|location=Sequence derived from alignment at H-paniculata_contig53478:769..1035+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTTTGACCGAGGCAGGTATCGCGAGTTGTGGAAGTTGCACGGGGATGC GATGGTTCACAGCGCCAGCGGCGGAGCGGGTGCAGGGGTGGCCGTGAGTA ACCTCGCTGCGAACATGGCGCAGGTAACCCTGACGAGTCTGGTCGCGGCG AGCTGCACCGTGGAGCCCGCGAAAAAGCGACTGCCCGCCTCCATGACGGT CGGAAAGTTGAAACAGCTTTGTAGGAGACTCTTCAAGGTTGACACCGATC AACAGGTATGTATGTAT
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Coding sequence (CDS) from alignment at H-paniculata_contig53478:769..1035+

>mRNA_H-paniculata_contig53478.12763.1 ID=mRNA_H-paniculata_contig53478.12763.1|Name=mRNA_H-paniculata_contig53478.12763.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig53478:769..1035+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTTTGACCGAGGCAGGTATCGCGAGTTGTGGAAGTTGCACGGGGATGC
GATGGTTCACAGCGCCAGCGGCGGAGCGGGTGCAGGGGTGGCCGTGAGTA
ACCTCGCTGCGAACATGGCGCAGGTAACCCTGACGAGTCTGGTCGCGGCG
AGCTGCACCGTGGAGCCCGCGAAAAAGCGACTGCCCGCCTCCATGACGGT
CGGAAAGTTGAAACAGCTTTGTAGGAGACTCTTCAAGGTTGACACCGATC
AACAGGTATGTATGTATCTGTTTGACCGAGGCAGGTATCGCGAGTTGTGG
AAGTTGCACGGGGATGCGATGGTTCACAGCGCCAGCGGCGGAGCGGGTGC
AGGGGTGGCCGTGAGTAACCTCGCTGCGAACATGGCGCAGGTAACCCTGA
CGAGTCTGGTCGCGGCGAGCTGCACCGTGGAGCCCGCGAAAAAGCGACTG
CCCGCCTCCATGACGGTCGGAAAGTTGAAACAGCTTTGTAGGAGACTCTT
CAAGGTTGACACCGATCAACAGGTATGTATGTAT
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