mRNA_H-paniculata_contig53478.12763.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig53478.12763.1 vs. uniprot
Match: D7G0Z3_ECTSI (Putative: beta-tubulin folding cofactor E n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z3_ECTSI) HSP 1 Score: 102 bits (253), Expect = 2.620e-23 Identity = 56/82 (68.29%), Postives = 63/82 (76.83%), Query Frame = 1
Query: 16 RYRELWKLHGDAMVHSASGGAGAGVAVSNLAANMAQVTLTSLVAASCTVEPAKKRLPAS-MTVGKLKQLCRRLFKVDTDQQV 258
RYRELW LHGD+M G AG G ++AA M QVTL SL A SCTVEP KK+LPAS +TVGKLKQLC+RLFK+DTDQQV
Sbjct: 503 RYRELWALHGDSMAFGGRG-AGLGQQGGSMAAGMVQVTLISLAAVSCTVEPVKKKLPASSLTVGKLKQLCKRLFKLDTDQQV 583
BLAST of mRNA_H-paniculata_contig53478.12763.1 vs. uniprot
Match: A0A6H5L3Q3_9PHAE (CAP-Gly domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Q3_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 7.660e-14 Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 1
Query: 121 QVTLTSLVAASCTVEPAKKRLPAS-MTVGKLKQLCRRLFKVDTDQQV 258
QVTL SL A SCTVEP KK+LPAS +TVGKLKQLC+RLFKVDTDQQV
Sbjct: 490 QVTLISLAAVSCTVEPIKKKLPASSLTVGKLKQLCKRLFKVDTDQQV 536
BLAST of mRNA_H-paniculata_contig53478.12763.1 vs. uniprot
Match: A0A7S1C881_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C881_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 2.550e-10 Identity = 37/85 (43.53%), Postives = 54/85 (63.53%), Query Frame = 1
Query: 1 LFDRGRYRELWKLHGDAMVHSASGGAGAGVAVSNLAANMAQVTLTSLVAASCTVEPAKKRLPASMTVGKLKQLCRRLFKVDTDQQ 255
L + RY +L HG +V +A+ GA LAA++ +VTL S+ AASCTVEP ++RLP SMT+G LK + +++FK + Q
Sbjct: 500 LAEHPRYFDLLDEHGHVLVAAAADAGGA-----TLAASVVKVTLRSMAAASCTVEPVERRLPLSMTIGSLKVMMQKIFKCELSAQ 579
BLAST of mRNA_H-paniculata_contig53478.12763.1 vs. uniprot
Match: A0A7S2Y046_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y046_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 3.940e-10 Identity = 33/84 (39.29%), Postives = 55/84 (65.48%), Query Frame = 1
Query: 16 RYRELWKLHGDAMVHSASGGAGAGVAVSNLAANMAQVTLTSLVAASCTVEPAKKRLPASMTVGKLKQLCRRLFKVDTDQQVCMY 267
R+REL+ H +++ G +G ++A+++ +VTL SLVA+S + +P KRL ++T+GKLKQ+C+ LF V D+QV +
Sbjct: 51 RFRELYDQHAHKLLNFGDGSNISGTG--SIASSLIEVTLQSLVASSTSFDPVSKRLSITLTIGKLKQMCKGLFGVPADEQVLYF 132
BLAST of mRNA_H-paniculata_contig53478.12763.1 vs. uniprot
Match: A0A7S2M1X1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M1X1_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 2.580e-8 Identity = 31/81 (38.27%), Postives = 50/81 (61.73%), Query Frame = 1
Query: 16 RYRELWKLHGDAMVHSASGGAGAGVAVSNLAANMAQVTLTSLVAASCTVEPAKKRLPASMTVGKLKQLCRRLFKVDTDQQV 258
++ L + H D M+ A+ G G+ N+ + VT+ S+ AASC +EP +KRLP S+ VG++K +C + F+VD D Q+
Sbjct: 216 QFNVLLEKHKDTMLSLANAGCGSSNQ-GNIGEEIINVTIRSMAAASCDMEPLRKRLPRSLKVGRIKTMCAKYFRVDIDLQM 295
BLAST of mRNA_H-paniculata_contig53478.12763.1 vs. uniprot
Match: A0A7R9WYB4_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WYB4_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 5.590e-8 Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = 1
Query: 16 RYRELWKLHGDAMV---HSASGGAGAGVAVSNLAANMAQVTLTSLVAASCTVEPAKKRLPASMTVGKLKQLCRRLFKVDTD 249
+Y L H D + +S +GGA +G S L+A +A + + S+ A+SC++EP +RLP S+TVG+LK LC R F +DTD
Sbjct: 70 QYDTLKDEHRDVIAAASNSTAGGA-SGSGGSTLSATVANLMVRSMAASSCSMEPLVRRLPGSLTVGRLKALCSRYFGLDTD 149
BLAST of mRNA_H-paniculata_contig53478.12763.1 vs. uniprot
Match: A0A448Z797_9STRA (CAP-Gly domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z797_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 7.220e-8 Identity = 35/83 (42.17%), Postives = 48/83 (57.83%), Query Frame = 1
Query: 1 LFDRGRYRELWKLHGDAMVHSASGGAGAGVAVSNLAANMAQVTLTSLVAASCTVEPAKKRLPASMTVGKLKQLCRRLFKVDTD 249
L D RY EL + H G +G G +LAA++ +T+ S+ AASCT++P +RLP SMTV + + LC R F VD D
Sbjct: 452 LDDHPRYPELMEKHNKLAALLTKGTSGGG----SLAASVYNLTIRSMAAASCTMDPVVRRLPGSMTVERTRALCSRAFGVDYD 530
BLAST of mRNA_H-paniculata_contig53478.12763.1 vs. uniprot
Match: B8C5G5_THAPS (CAP-Gly domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5G5_THAPS) HSP 1 Score: 57.4 bits (137), Expect = 1.300e-7 Identity = 32/82 (39.02%), Postives = 49/82 (59.76%), Query Frame = 1
Query: 16 RYRELWKLHGDAMVHSASGGAGAGVAVSN-LAANMAQVTLTSLVAASCTVEPAKKRLPASMTVGKLKQLCRRLFKVDTDQQV 258
R++ L H D M+ S AG + S + ++ VT+ S+ A+SC VEP +KRLP S+ VG++K +C R F +D D Q+
Sbjct: 456 RFKHLMTKHKDTMMALNSSAAGTDSSGSGKIGEDVINVTIRSMAASSCDVEPLQKRLPRSLQVGRIKAMCARAFGLDIDLQI 537
BLAST of mRNA_H-paniculata_contig53478.12763.1 vs. uniprot
Match: A0A7S4UL71_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UL71_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 1.750e-7 Identity = 32/78 (41.03%), Postives = 48/78 (61.54%), Query Frame = 1
Query: 16 RYRELWKLHGDAMVHSASGGAGAGVAVSNLAANMAQVTLTSLVAASCTVEPAKKRLPASMTVGKLKQLCRRLFKVDTD 249
R+ EL H D+M+ S + G +N+A + VT+ S+ A+SC +EP +KRLP ++ VG+LK LC R F +D D
Sbjct: 401 RFDELMNKHKDSMLSIQS--SANGNTRNNIANDAINVTVRSMAASSCAMEPMRKRLPGTLKVGRLKILCSRAFGIDVD 476
BLAST of mRNA_H-paniculata_contig53478.12763.1 vs. uniprot
Match: A0A7S4QTJ8_9STRA (Hypothetical protein n=5 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QTJ8_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 1.790e-7 Identity = 32/78 (41.03%), Postives = 48/78 (61.54%), Query Frame = 1
Query: 16 RYRELWKLHGDAMVHSASGGAGAGVAVSNLAANMAQVTLTSLVAASCTVEPAKKRLPASMTVGKLKQLCRRLFKVDTD 249
R+ EL H D+M+ S + G +N+A + VT+ S+ A+SC +EP +KRLP ++ VG+LK LC R F +D D
Sbjct: 521 RFDELMNKHKDSMLSIQS--SANGNTRNNIANDAINVTVRSMAASSCAMEPMRKRLPGTLKVGRLKILCSRAFGIDVD 596 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53478.12763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig53478.12763.1 >prot_H-paniculata_contig53478.12763.1 ID=prot_H-paniculata_contig53478.12763.1|Name=mRNA_H-paniculata_contig53478.12763.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp LFDRGRYRELWKLHGDAMVHSASGGAGAGVAVSNLAANMAQVTLTSLVAAback to top mRNA from alignment at H-paniculata_contig53478:769..1035+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig53478.12763.1 ID=mRNA_H-paniculata_contig53478.12763.1|Name=mRNA_H-paniculata_contig53478.12763.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=267bp|location=Sequence derived from alignment at H-paniculata_contig53478:769..1035+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig53478:769..1035+ >mRNA_H-paniculata_contig53478.12763.1 ID=mRNA_H-paniculata_contig53478.12763.1|Name=mRNA_H-paniculata_contig53478.12763.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig53478:769..1035+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |