mRNA_H-paniculata_contig5338.12748.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5338.12748.1
Unique NamemRNA_H-paniculata_contig5338.12748.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5338.12748.1 vs. uniprot
Match: D7FR95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR95_ECTSI)

HSP 1 Score: 395 bits (1016), Expect = 6.530e-137
Identity = 191/265 (72.08%), Postives = 215/265 (81.13%), Query Frame = 1
Query:    1 MYSLEGDGVSEHLYDFIWCKDEVSFRPILNIPDTVVYKFGQPISWYFTGIDGRVKKKLKTNIINSKIEEAFVKANVGSDVIAYYVSWASDASKYSDEDNHATTIEYLDRQDFRNFLYKRWKERNGILQRFVEPKGTRNAMVRAIWSPKMCLLERRVNVRQLHDKRHGLYERAVTYDGPDIYSTASPLRGSVLPSQVQKCCESIVTHVSAVSFKKTRICRMSLNFKIDSRDRVWLLWSNSIRLASETPPGHETYTHVDSPINIGEL 795
            MYSLEGDGV EHLY+FI CKDE+SFRP +NI DT+VYKFGQP+SWYFTG+DG+VKKK KTNIIN+KIEEAFVKA+VGSD++AYY+SW S+ SKY DE+   TTIEYLDRQ                             MVRAIWSPKMCLLERRVN RQLHD+R+G+YERAVTYDGPDI+STA PLRGSVLPSQVQ+CCES+V HVS V F+KTR+CRMSLNFKIDSRDRVWLLWSNSIRLASE PPG E++T V  PINIGEL
Sbjct:    1 MYSLEGDGVCEHLYEFISCKDELSFRPTINIADTIVYKFGQPVSWYFTGVDGKVKKKFKTNIINTKIEEAFVKASVGSDIVAYYISWTSNGSKYQDENEDKTTIEYLDRQGL--------------------------PMVRAIWSPKMCLLERRVNCRQLHDRRYGIYERAVTYDGPDIFSTACPLRGSVLPSQVQRCCESVVAHVSEVLFRKTRVCRMSLNFKIDSRDRVWLLWSNSIRLASEMPPGRESFTCVGGPINIGEL 239          
BLAST of mRNA_H-paniculata_contig5338.12748.1 vs. uniprot
Match: A0A7S2CLG5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CLG5_9STRA)

HSP 1 Score: 338 bits (866), Expect = 7.720e-113
Identity = 153/268 (57.09%), Postives = 213/268 (79.48%), Query Frame = 1
Query:    1 MYSLEGDGVSEHLYDFIWCKDEVSFRPILNIPDTVVYKFGQPISWYFTGIDGRVKKKLKTNIINSKIEEAFVKANVGSDVIAYYVSWASDASKYSDEDNHATTIEYLDRQDFRNFLYKRWKERNGILQRFVEPKGTRNAMVRAIWSPKMCLLERRVNVRQLHDKRHGLYERAVTYDGPDIYSTASPLRGSVLPSQVQKCCESIVTHVSAVSFKKTRICRMSLNFKIDSRDRVWLLWSNSIRLASETPPGHETY--THVDSPINIGELV 798
            ++S+ GDGVS+  +  +W KDE++F P +NIPDTV++KFGQ ++WYFTG+DG++KKK K N++N +IEEAF +  +GSD++AYY+S  +D +   D  N  T+IEY DR+ F +FLY RWKE +G+LQRF+EPKGT+N++VRAIWSPK+CLLERR N +QLHD R+GLYERAVTY+GP+ +S A+PLRGS+LPSQVQ+ CE++V+H++ VSF+K  ICRM LNFK+D++DR+WLLWS+S+RL SE   G +        +P+NI  +V
Sbjct:    4 LHSVHGDGVSDQFFHLLWSKDELNFGPTINIPDTVIFKFGQAVAWYFTGVDGKLKKKNKQNLVNVRIEEAFTRHVIGSDIVAYYISTETDDA--GDVSN--TSIEYFDRKAFHDFLYNRWKEHSGLLQRFIEPKGTQNSLVRAIWSPKVCLLERRQNNKQLHDTRYGLYERAVTYEGPEYFSAAAPLRGSILPSQVQRICENVVSHIAEVSFQKQCICRMVLNFKVDAKDRIWLLWSSSLRLTSEMTGGEDGLGGRRTAAPLNIDSIV 267          
BLAST of mRNA_H-paniculata_contig5338.12748.1 vs. uniprot
Match: F0YMK7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMK7_AURAN)

HSP 1 Score: 327 bits (837), Expect = 1.470e-104
Identity = 156/262 (59.54%), Postives = 199/262 (75.95%), Query Frame = 1
Query:    7 SLEGDGVSEHLYDFIWCKDEVSFRPILNIPDTVVYKFGQPISWYFTGI-DGRVKKKLKTNIINSKIEEAFVKANVGSDVIAYYVSWASDASKYSDEDNHATTIEYLDRQDFRNFLYKRWKERNGILQRFVEPKGTRNAMVRAIWSPKMCLLERRVNVRQLHDKRHGLYERAVTYDGPDIYSTASPLRGSVLPSQVQKCCESIVTHVSAVSFKKTRICRMSLNFKIDSRDRVWLLWSNSIRLASETPPGHETYTHVDSPINIG 789
            SLEGDG+S+ L  ++  KDE+ + P L +PDTVVYKFGQP+ WYFT   DG++KKK K N++N +IEE F K N+G D++AYY+S  +D S         T IEY DR+   +FLY RWKE NG+LQRFVEPKG RN ++RAIWSPK+CLLERRVN +QLHD R+GLYERAVTY+GP+ +S A+PLRGS LPSQ+Q+ CE++VTH++ VSF+K RI RM +NFK+DSRDR+WLLWS+SIRL SE         H  +PI+IG
Sbjct:    5 SLEGDGISDVLLHWLHAKDELGYGPSLWLPDTVVYKFGQPVHWYFTSAADGKIKKKNKQNLVNVRIEETFNKRNIGCDIVAYYISEVTDESG----GGATTNIEYFDRRGLHDFLYNRWKEHNGVLQRFVEPKGIRNVVIRAIWSPKVCLLERRVNAKQLHDHRYGLYERAVTYEGPEHFSAAAPLRGSTLPSQIQRICENLVTHINEVSFQKHRIARMVINFKVDSRDRIWLLWSSSIRLTSE---------HKQAPISIG 253          
BLAST of mRNA_H-paniculata_contig5338.12748.1 vs. uniprot
Match: A0A7S1XZC3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZC3_9STRA)

HSP 1 Score: 314 bits (805), Expect = 2.100e-98
Identity = 142/241 (58.92%), Postives = 193/241 (80.08%), Query Frame = 1
Query:    7 SLEGDGVSEHLYDFIWCKDEVSFRPILNIPDTVVYKFGQPISWYFTGIDGRVKKKLKTNIINSKIEEAFVKANVGSDVIAYYVSWAS-DASKYSDEDNHATTIEYLDRQDFRNFLYKRWKERNGILQRFVEPKGTRNAMVRAIWSPKMCLLERRVNVRQLHDKRHGLYERAVTYDGPDIYSTASPLRGSVLPSQVQKCCESIVTHVSAVSFKKTRICRMSLNFKIDSRDRVWLLWSNSIRL 726
            +++ DGV+EH + ++WCKDE++F   L +PDTVVYKFG P++WYFTG+DG +K+K K N++N++IEEA  K  +GSDV+AYY++  S D  + +    H + IEY D+     FLY R+K+ +GILQRFVEPKGT NA++RAIWSPK+CLLERR NVRQLHD R GLYER +TY+GPD +S A+PLRGSVLPSQ+Q+ CE++V+HV+ VS++  RI RM LNFK+D+RD++WLLWS+S+RL
Sbjct:    6 TIDRDGVNEHFFHYLWCKDELNFGVHLWLPDTVVYKFGHPVAWYFTGVDGSIKRKHKQNLVNARIEEAMTKRVIGSDVVAYYMTLPSPDEEEDAKTTGHESDIEYFDKDALHQFLYTRFKDSSGILQRFVEPKGTNNAVIRAIWSPKICLLERRQNVRQLHDGRFGLYERCITYEGPDHHSRAAPLRGSVLPSQIQRICENVVSHVAEVSYQTFRISRMVLNFKVDARDKIWLLWSSSMRL 246          
BLAST of mRNA_H-paniculata_contig5338.12748.1 vs. uniprot
Match: F0YIR0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIR0_AURAN)

HSP 1 Score: 306 bits (785), Expect = 1.240e-95
Identity = 149/243 (61.32%), Postives = 189/243 (77.78%), Query Frame = 1
Query:    7 SLEGDGVSEHLYDFIWCKDEVSFRPILNIPDTVVYKFGQPISWYFTG-IDGRVKKKLKTNIINSKIEEAFVKANVGSDVIAYYVSW-ASDASKYSDEDNHATTIEYLDRQDFRNFLYKRWKERNGILQRFVEPKGTRNAMVRAIWSPKMCLLERRVNVRQLHDKRHGLYERAVTYDGPDIYSTASPLRGSVLPSQVQKCCESIVTHVSAVSFKKTRICRMSLNFKIDSRDRVWLLWSNSIRLA 729
            SLEGDG+S+ L  ++  KDE+ + P L +PDTVVYKFGQP+ WYFT  +D ++KKK K N++N +IEEAF K + G D++AYY+S  A + S  SD     TTIEY DR+    FLY RWKE NGILQRFVEPKG  NA++RAIWSPK+CLLERRVN +QLHD+R+GLYERAVTY+GP+ +S A+PLRGS LPSQVQ+ CE++V H++ VSF+K  I RM  NFK+DS+ R+W LWS+SIRLA
Sbjct:    5 SLEGDGISDTLLHWLHAKDELGYGPSLWLPDTVVYKFGQPVHWYFTSTVDSKLKKKNKQNLVNVRIEEAFNKRSAGCDLVAYYISEVALEGSAESD-----TTIEYFDRRGLHEFLYNRWKENNGILQRFVEPKGMHNAIIRAIWSPKVCLLERRVNSKQLHDQRYGLYERAVTYEGPEHFSAAAPLRGSTLPSQVQRICENLVAHITEVSFQKHCIMRMVANFKVDSKGRIWFLWSSSIRLA 242          
BLAST of mRNA_H-paniculata_contig5338.12748.1 vs. uniprot
Match: A0A836CLN6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLN6_9STRA)

HSP 1 Score: 296 bits (758), Expect = 4.940e-95
Identity = 140/262 (53.44%), Postives = 187/262 (71.37%), Query Frame = 1
Query:   10 LEGDGVSEHLYDFIWCKDEVSFRPILNIPDTVVYKFGQPISWYFTGIDGRVKKKLKTNIINSKIEEAFVKAN-------------------VGSDVIAYYVSWASDASKYSDEDNHATT-IEYLDRQDFRNFLYKRWKERNGILQRFVEPKGTRNAMVRAIWSPKMCLLERRVNVRQLHDKRHGLYERAVTYDGPDIYSTASPLRGSVLPSQVQKCCESIVTHVSAVSFKKTRICRMSLNFKIDSRDRVWLLWSNSIRLASE 735
            + GDGV   LY+++WCKDE+SF P +N+PDTVVYK+GQP+ WYFT +DG +KKKL++N+ N+KIEE+F+K                      GSDV+AYY+SW ++ +   ++   A   IEY D    + FL+ R K+ NGILQ FVEP G+ NA+VRAIW+PK+CL ERRVN R+L DKR+GL+ERAVTYDGPDIYS A PLRG+VLP+ V+  C++I  HV+ ++  + RI  MSLN KID +DR+WLLWS+SIRL  +
Sbjct:    1 IAGDGVCISLYEYLWCKDEISFSPQINVPDTVVYKYGQPVHWYFTAMDGTIKKKLRSNMTNAKIEESFLKKAHAQAPKTSKSKHHPQDALLEGSDVVAYYISWETNGADAGNKSEQAAAEIEYFDAAGLKEFLFHRSKQHNGILQAFVEPSGSSNAVVRAIWTPKLCLTERRVNCRKLRDKRYGLFERAVTYDGPDIYSVARPLRGTVLPTAVRHLCDAIAAHVAEITIHQQRISCMSLNLKIDHKDRLWLLWSSSIRLVRD 262          
BLAST of mRNA_H-paniculata_contig5338.12748.1 vs. uniprot
Match: A0A6S8UJB5_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8UJB5_9STRA)

HSP 1 Score: 298 bits (762), Expect = 8.100e-94
Identity = 143/263 (54.37%), Postives = 189/263 (71.86%), Query Frame = 1
Query:   10 LEGDGVSEHLYDFIWCKDEVSFRPILNIPDTVVYKFGQPISWYFTGIDGRVKKKLKTNIINSKIEEAFVKANVGSDVIAYYVSWASDASKYSDEDNHATTIEYLDRQDFRNFLYKRWKERNGILQRFVEPKGTRNAMVRAIWSPKMCLLERRVNVRQLHDKRHGLYERAVTYDGPDIYSTASPLRGSVLPSQVQKCCESIVTHVSAVSFKKTRICRMSLNFKIDSRDRVWLLWSNSIRLASETPPGHETYTHVDSPINIGELV 798
            LEGDG+S+ L  ++  KDE+ + P L +PDT+VYKFGQP+ WYFT + G++KKK K N+ N +IEE F K N  S+V+AYY+S  +   +        T IEY DR+    FLY RWKE NGILQ FVEPKG  NA++RAIWSPK+CLLERRVN +QL+D+R+GLYERAVTY+GP+ +S ASPLRG+ LPSQ+Q+ CE++V HV+ VSF+K R+ RM  NFK+DSR R+W LWS+SIRL        +    + +PI+I   +
Sbjct:    6 LEGDGISDVLLSWLHTKDELGYGPSLRMPDTIVYKFGQPVHWYFTSVSGKLKKKNKQNLANVRIEEVFNKRN--SEVVAYYMSEMAVQGRRE----KVTAIEYFDRRGLHEFLYNRWKENNGILQHFVEPKGVHNAIIRAIWSPKVCLLERRVNSKQLYDQRYGLYERAVTYEGPEHFSIASPLRGTALPSQIQRLCENLVAHVTEVSFQKCRVARMVANFKVDSRGRIWFLWSDSIRLERSCGKSQDL-PRICTPIDINRTI 261          
BLAST of mRNA_H-paniculata_contig5338.12748.1 vs. uniprot
Match: A0A482RV48_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RV48_9ARCH)

HSP 1 Score: 294 bits (752), Expect = 2.490e-93
Identity = 137/268 (51.12%), Postives = 193/268 (72.01%), Query Frame = 1
Query:    7 SLEGDGVSEHLYDFIWCKDEVSFRPILNIPDTVVYKFGQPISWYFTGIDGRVKKKLKTNIINSKIEEAFVKANVGSDVIAYYVSWASDASKYSDEDNHATTIEYLDRQDFRNFLYKRWKERNGILQRFVEPKGTRNAMVRAIWSPKMCLLERRVNVRQLHDKRHGLYERAVTYDGPDIYSTASPLRGSVLPSQVQKCCESIVTHVSAVSFKKTRICRMSLNFKIDSRDRVWLLWSNSIRLASETPPGHET----YTHVDSPINIGELV 798
            SL  DG+S+ LY  +W +DE+++ P +NIPDT++YK+GQP++WYFT ++GR+K+K K N++++KIEEAF K  +G DV+AY+++ AS+  +  ++ +  T IEY DR    NFLY   K  NGILQRF+EPK T N ++RAIWSPK+CLLER  N+ QLHD+R+GLYER V Y+GPD Y T++PLRG VL  Q+QK CESIV H+S V++ +  I RM L+FK+DSRD++WLL+S SIR        H T      ++DS +++   V
Sbjct:   13 SLIKDGISDDLYKLLWARDELNYGPHINIPDTIIYKYGQPVTWYFTSVNGRIKRKNKQNLLSAKIEEAFNKHILGYDVVAYFITMASEHERSVNDSSTPTIIEYFDRVGLNNFLYNHKKGVNGILQRFIEPKSTHNELIRAIWSPKLCLLERAENIHQLHDQRYGLYERCVVYEGPDYYFTSAPLRGPVLSGQLQKLCESIVHHISEVTYGQKLITRMVLSFKVDSRDKIWLLYSTSIRSDDMLEHKHSTTERHLLNIDSVVSLPNTV 280          
BLAST of mRNA_H-paniculata_contig5338.12748.1 vs. uniprot
Match: A0A7S3H9W1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H9W1_9STRA)

HSP 1 Score: 292 bits (747), Expect = 2.600e-91
Identity = 140/269 (52.04%), Postives = 191/269 (71.00%), Query Frame = 1
Query:    1 MYSLEGDGVSEHLYDFIWCKDEVSFRPILNIPDTVVYKFGQPISWYFTGIDGRVKKKLKTNIINSKIEEAFVKANVGSDVIAYYVSWASDASKYSDEDNHATTIEYLDRQDFRNFLYKRWKERNGILQRFVEPKGTRNAMVRAIWSPKMCLLERRVNVRQLHDKRHGLYERAVTYDGPDIYSTASPLRGSVLPSQVQKCCESIVTHVSAVSFKKTRICRMSLNFKIDSRDRVWLLWSNSIR---LASETPPGHETYTHVDSPINIGELV 798
            ++SL  DG+SE L+  +W KDE++  P +NIPDT+VYK+G P+SWYFT  +G++KKKLK N++++KIEE F K  +G DV+A ++S  ++A         A  IEYLDR+   NFLY R KE NGILQRF+EPK TRN +VRAIWSPK+CLLER  N+ QLHD R+GLYER V Y+GP+ Y+T++PLRG VL  Q+QK CE +V H+S V+F + ++ R+ LNFK+DSRD++WL++S SIR   +   T P     T     +NI  +V
Sbjct:   11 LHSLSKDGISEDLFKLLWAKDELNSGPSINIPDTIVYKYGTPVSWYFTSTNGKIKKKLKQNLVSAKIEETFNKHVLGYDVLAVFISMPAEAEVAP---GGANVIEYLDREALNNFLYNRKKEVNGILQRFIEPKSTRNELVRAIWSPKVCLLERSENIHQLHDHRYGLYERCVIYEGPEYYTTSAPLRGPVLSGQLQKLCEEVVAHISEVTFGQKQVSRIVLNFKVDSRDKIWLMYSTSIRCLDMLDYTNPTDAAATLQRQLLNIDSVV 276          
BLAST of mRNA_H-paniculata_contig5338.12748.1 vs. uniprot
Match: A0A6G0WWE7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WWE7_9STRA)

HSP 1 Score: 277 bits (708), Expect = 5.580e-87
Identity = 138/262 (52.67%), Postives = 175/262 (66.79%), Query Frame = 1
Query:   10 LEGDGVSEHLYDFIWCKDEVSFRPILNIPDTVVYKFGQPISWYFTGIDGRVKKKLKTNIINSKIEEAFVKANVGSDVIAYYVSWASDASKYSDEDNHATTIEYLDRQDFRNFLYKRWKERNGILQRFVEPKGTRNAMVRAIWSPKMCLLERRVNVRQLHDKRHGLYERAVTYDGPDIYSTASPLRGSVLPSQVQKCCESIVTHVSAVSFKKTRICRMSLNFKIDSRDRVWLLWSNSIRLASETPPGHETYTHVDSPINIGEL 795
            LEGDG+ E+L+ ++WCKDE    P L IPDTVVYKF QP  WYFT   G+VKKK KT++ N  IE+ F +   G D++AYY+   +D            TIEY      ++FLY R K  NGILQRF+ PKG+ N+M+RAIW+PKMCLLER+ N+R+LHD R+GLYERAVT+DG D YS   P+RGSVLP  +Q  CE +V HV  VSF K RI RM L+ K D+ D+VWLLWS+SIRLA      H + +H  + +N   L
Sbjct:    9 LEGDGLVENLFYYLWCKDEFGGGPSLLIPDTVVYKFTQPAYWYFTSKSGKVKKKSKTSLTNVMIEKEFCRKACGVDIVAYYIYMLNDVP----------TIEYFTVDGLKDFLYSRQKIHNGILQRFIVPKGSANSMIRAIWTPKMCLLERKTNIRRLHDLRYGLYERAVTFDGADAYSNPDPVRGSVLPGDIQYLCEQVVDHVMEVSFHKYRISRMVLHIKTDAEDKVWLLWSSSIRLA------HPSRSHNSNAMNSASL 254          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5338.12748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR95_ECTSI6.530e-13772.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2CLG5_9STRA7.720e-11357.09Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
F0YMK7_AURAN1.470e-10459.54Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S1XZC3_9STRA2.100e-9858.92Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
F0YIR0_AURAN1.240e-9561.32Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A836CLN6_9STRA4.940e-9553.44Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A6S8UJB5_9STRA8.100e-9454.37Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A482RV48_9ARCH2.490e-9351.12Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A7S3H9W1_9STRA2.600e-9152.04Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A6G0WWE7_9STRA5.580e-8752.67Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5338contigH-paniculata_contig5338:431..2920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score397.5
Seed ortholog evalue4.9e-108
Seed eggNOG ortholog2880.D7FR95
Hectar predicted targeting categoryother localisation
EggNOG OGs28Q4D@1,2QWT8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size798
Cds size798
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5338.12748.1prot_H-paniculata_contig5338.12748.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5338 431..2920 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930542.498737-CDS-H-paniculata_contig5338:430..6751622930542.498737-CDS-H-paniculata_contig5338:430..675Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5338 431..675 -
1691481340.595737-CDS-H-paniculata_contig5338:430..6751691481340.595737-CDS-H-paniculata_contig5338:430..675Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5338 431..675 -
1622930542.5208771-CDS-H-paniculata_contig5338:970..11081622930542.5208771-CDS-H-paniculata_contig5338:970..1108Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5338 971..1108 -
1691481340.608077-CDS-H-paniculata_contig5338:970..11081691481340.608077-CDS-H-paniculata_contig5338:970..1108Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5338 971..1108 -
1622930542.5430326-CDS-H-paniculata_contig5338:1237..13151622930542.5430326-CDS-H-paniculata_contig5338:1237..1315Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5338 1238..1315 -
1691481340.6172974-CDS-H-paniculata_contig5338:1237..13151691481340.6172974-CDS-H-paniculata_contig5338:1237..1315Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5338 1238..1315 -
1622930542.5629861-CDS-H-paniculata_contig5338:1906..19541622930542.5629861-CDS-H-paniculata_contig5338:1906..1954Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5338 1907..1954 -
1691481340.626737-CDS-H-paniculata_contig5338:1906..19541691481340.626737-CDS-H-paniculata_contig5338:1906..1954Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5338 1907..1954 -
1622930542.577248-CDS-H-paniculata_contig5338:2631..29201622930542.577248-CDS-H-paniculata_contig5338:2631..2920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5338 2632..2920 -
1691481340.6370044-CDS-H-paniculata_contig5338:2631..29201691481340.6370044-CDS-H-paniculata_contig5338:2631..2920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5338 2632..2920 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5338.12748.1

>prot_H-paniculata_contig5338.12748.1 ID=prot_H-paniculata_contig5338.12748.1|Name=mRNA_H-paniculata_contig5338.12748.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=266bp
MYSLEGDGVSEHLYDFIWCKDEVSFRPILNIPDTVVYKFGQPISWYFTGI
DGRVKKKLKTNIINSKIEEAFVKANVGSDVIAYYVSWASDASKYSDEDNH
ATTIEYLDRQDFRNFLYKRWKERNGILQRFVEPKGTRNAMVRAIWSPKMC
LLERRVNVRQLHDKRHGLYERAVTYDGPDIYSTASPLRGSVLPSQVQKCC
ESIVTHVSAVSFKKTRICRMSLNFKIDSRDRVWLLWSNSIRLASETPPGH
ETYTHVDSPINIGELV
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mRNA from alignment at H-paniculata_contig5338:431..2920-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5338.12748.1 ID=mRNA_H-paniculata_contig5338.12748.1|Name=mRNA_H-paniculata_contig5338.12748.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2490bp|location=Sequence derived from alignment at H-paniculata_contig5338:431..2920- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACTCGCTCGAGGGTGATGGGGTGAGTGAGCACCTCTACGACTTCAT TTGGTGCAAAGATGAAGTCTCCTTCCGACCAATACTCAACATTCCGGACA CAGTCGTGTACAAGTTTGGCCAACCCATAAGTTGGTACTTCACAGGCATC GACGGTCGGGTGAAGAAAAAGCTCAAGACGAACATCATCAACTCTAAGAT TGAAGAAGCTTTCGTGAAAGCCAACGTGGGATCTGATGTTATCGCGTACT ATGTGTCTTGGGCAAGCGATGCTTCCAAGTATTCCGATGGTGTGTATTGT GAGAAGATGACTATTAACATGCACCAATAGTATTTTGGGATATTGCAGGA GTTTCATTAGGACAAATGTGGATCGTCATCGGGTCCGCCTTCTCGCAGGA TGGATGTCCTAGCTCGAAAACGAGCAAGCAGCAAAGTGCCAAAGATACGA AAGTACTGCATGTTGGCATTTGTCCTGTTCAATTGAGAAATTGGGGTGGA ATAGTGGTCTCGGGAGGTGGTGCACTTCCGCATACGGCGGTTGATTTGAG AGAACGGAGTTCGAAGTAAACTATACTCGCGTCGTCCTAGCGCATTGCGT AACGCTGATCGGTATTGAAACGATGGGTCCAGGGGTCTTGACTGGATTAA TGAACCTAAGCAGAGCAAATCCGTTCCCGTGTAAGGAAGAGACCGGAAAT AAGAAGATATAGCTAGCGCCGGCGCTCCTGTGAAGGGGCGCCCTTGATGA TGACCGGCATGACGCAAAGCTCAAAATGTAGTTCAAGGAAAATGTATTCT CAAGATGTAGCGTAATTTAGAGGGCGACCACCTTTGGGGTAAGAGGGCAG TTTTACCGACAGCTATTGTGCCCGTAGCGCATGAACTTCTTGAAACTGAA TATATCACCCTTAGCTGATCAATACCTTCTATTTTACTCCTGCACTTTAT CCTCATGCACTCGCAGAAGATAACCACGCAACGACCATCGAGTACCTGGA TCGGCAGGATTTTCGTGAGTATCTCGCCTATATCTGAAAAACAAATATAG AAGATTTGGATCGACTTGTTCTGTCTGTCCGTAACGCTTGCGCCTACAGA ACTCACGCGACACACGATGGCTCAGTAAACATGACAGACGTTGCGTTCGC GCCTGCGTGTCACCTAAATGAGCGTGTAAATTGACGCAGTCTTGCGGAGG TAATTAGTCCGTGGCTCCTCGAGCATCCTTGTGTGATATGTACAAGTGTA CGCTTCGGATAGAGGTTTTTGCCTTAGCCTTCCGGGGGTTAAAAAAACAA ATGTACAACTGAAAGGCTGTCCACTCATTAACTGGAGATATTATCATTCT CATCACCCCATACCCTACGTTTTCGAAGTGTGCGCACGTGTTCAAGTTGT ATGTTGTGCAGAATCTTGAATTGGTTCTCGAGAAAATTCTCATTGAGAAC CAGCCTTTCCCGGCGTCGTCCCCATCAAATTAATGCTGACTCATCATTCG GTTACCTTGTATCCATTTGTGGAGTCACTTCGACCACCATACTGCACAGT GGCAATAGCTTCTTCAATCCAGCACAAAACAAATGTTGTTCGGTGGCGGC CTTAGGTAATTTCCTGTACAAGCGCTGGAAGGAACGCAATGGAATCCTGC AGCGTTTCGTGGAGCCCAAGGGTACGCGCAATGGTAGGTGGCGTGGGACA TAACTACGGCTGTTGGGTGTTTGCAGCAAAATGGAACGAGGAGAAAAGGA TATCTTGTGCGGACCTATGACAACAAGATTTATTCGCTGATTTTTTCCCC ATGACACCACAGCAATGGTGAGAGCGATCTGGTCTCCTAAAATGTGCTTG CTGGAGCGGAGGGTCAACGTACGCCAACTGCATGACAAACGCCATGGGTT ATATGAGCGAGCTGTCACGTACGATGGTCCTGATATCTACAGCACCGCGT GTGAGCGTTGACGATACTTGACAGCAGCCGTGTGCATGCGCTCTATGCAC AATTTTGTCTGTTGATTTGATGTACGCGTCATATCTAACAGCATTAACTT ACTATGAACTGTGGGTGGCCACGAGCTCATCTTAACGGTAAGCGGGATAT CTTTACGCCTTGCGCACAAATTTGTTGTTCGTATGGTGTACCTGGAATAT ATAGCTTCCGTGATATTGATATGAACTGTGGTGTCCACAAGCTTACACAT CAACTTCCCTTGAAACGCCTGCATTTAAACTGCGTGGTTGCGCAGCTCCC CTTCGAGGAAGCGTGCTTCCATCGCAAGTGCAGAAATGCTGTGAAAGTAT TGTGACGCATGTGAGCGCAGTTTCGTTCAAGAAAACGAGAATATGCCGTA TGTCTCTCAATTTCAAGATTGACTCCCGTGATCGCGTGTGGCTGCTTTGG AGCAACTCGATACGACTGGCGTCTGAGACGCCGCCAGGGCACGAGACCTA TACGCATGTGGATAGTCCCATCAACATTGGCGAGTTGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig5338:431..2920-

>mRNA_H-paniculata_contig5338.12748.1 ID=mRNA_H-paniculata_contig5338.12748.1|Name=mRNA_H-paniculata_contig5338.12748.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1596bp|location=Sequence derived from alignment at H-paniculata_contig5338:431..2920- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACTCGCTCGAGGGTGATGGGGTGAGTGAGCACCTCTACGACTTCAT
TTGGTGCAAAGATGAAGTCTCCTTCCGACCAATACTCAACATTCCGGACA
CAGTCGTGTACAAGTTTGGCCAACCCATAAGTTGGTACTTCACAGGCATC
GACGGTCGGGTGAAGAAAAAGCTCAAGACGAACATCATCAACTCTAAGAT
TGAAGAAGCTTTCGTGAAAGCCAACGTGGGATCTGATGTTATCGCGTACT
ATGTGTCTTGGGCAAGCGATGCTTCCAAGTATTCCGATGATGTACTCGCT
CGAGGGTGATGGGGTGAGTGAGCACCTCTACGACTTCATTTGGTGCAAAG
ATGAAGTCTCCTTCCGACCAATACTCAACATTCCGGACACAGTCGTGTAC
AAGTTTGGCCAACCCATAAGTTGGTACTTCACAGGCATCGACGGTCGGGT
GAAGAAAAAGCTCAAGACGAACATCATCAACTCTAAGATTGAAGAAGCTT
TCGTGAAAGCCAACGTGGGATCTGATGTTATCGCGTACTATGTGTCTTGG
GCAAGCGATGCTTCCAAGTATTCCGATGAAGATAACCACGCAACGACCAT
CGAGTACCTGGATCGGCAGGATTTTCAAGATAACCACGCAACGACCATCG
AGTACCTGGATCGGCAGGATTTTCGTAATTTCCTGTACAAGCGCTGGAAG
GAACGCAATGGAATCCTGCAGCGTTTCGTGGAGCCCAAGGGTACGCGCAA
TGGTAATTTCCTGTACAAGCGCTGGAAGGAACGCAATGGAATCCTGCAGC
GTTTCGTGGAGCCCAAGGGTACGCGCAATGCAATGGTGAGAGCGATCTGG
TCTCCTAAAATGTGCTTGCTGGAGCGGAGGGTCAACGTACGCCAACTGCA
TGACAAACGCCATGGGTTATATGAGCGAGCTGTCACGTACGATGGTCCTG
ATATCTACAGCACCGCGTCAATGGTGAGAGCGATCTGGTCTCCTAAAATG
TGCTTGCTGGAGCGGAGGGTCAACGTACGCCAACTGCATGACAAACGCCA
TGGGTTATATGAGCGAGCTGTCACGTACGATGGTCCTGATATCTACAGCA
CCGCGTCTCCCCTTCGAGGAAGCGTGCTTCCATCGCAAGTGCAGAAATGC
TGTGAAAGTATTGTGACGCATGTGAGCGCAGTTTCGTTCAAGAAAACGAG
AATATGCCGTATGTCTCTCAATTTCAAGATTGACTCCCGTGATCGCGTGT
GGCTGCTTTGGAGCAACTCGATACGACTGGCGTCTGAGACGCCGCCAGGG
CACGAGACCTATACGCATGTGGATAGTCCCATCAACATTGGCGAGTTGGT
GCTCCCCTTCGAGGAAGCGTGCTTCCATCGCAAGTGCAGAAATGCTGTGA
AAGTATTGTGACGCATGTGAGCGCAGTTTCGTTCAAGAAAACGAGAATAT
GCCGTATGTCTCTCAATTTCAAGATTGACTCCCGTGATCGCGTGTGGCTG
CTTTGGAGCAACTCGATACGACTGGCGTCTGAGACGCCGCCAGGGCACGA
GACCTATACGCATGTGGATAGTCCCATCAACATTGGCGAGTTGGTG
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