mRNA_H-paniculata_contig53348.12745.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig53348.12745.1
Unique NamemRNA_H-paniculata_contig53348.12745.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig53348.12745.1 vs. uniprot
Match: A0A2K3K2M2_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3K2M2_TRIPR)

HSP 1 Score: 51.6 bits (122), Expect = 2.900e-5
Identity = 29/81 (35.80%), Postives = 46/81 (56.79%), Query Frame = 1 
Query:  115 GSSSGAWSIFEDWFRDTTCGERTRV---RKDFENLAVQQNEAPNEFLARSFVIVERMKEIGVDMTETEVHHQIVRSLPDRF 348
            GS    W      ++ +T  +R ++   R+DFE LA++ NE+ N++ AR+  IV +M   G  M  T+V  +I+RSL  RF
Sbjct:   88 GSPRDIWEAMRTKYQGSTQVKRAQLQALRRDFEILAMKDNESINDYFARTLSIVNKMTAQGHKMESTDVVEKILRSLTSRF 168
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BLAST of mRNA_H-paniculata_contig53348.12745.1 vs. uniprot
Match: A0A2Z6MEK1_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6MEK1_TRISU)

HSP 1 Score: 50.4 bits (119), Expect = 5.650e-5
Identity = 26/80 (32.50%), Postives = 47/80 (58.75%), Query Frame = 1 
Query:  118 SSSGAWSIFEDWFRDTTCGERTRV---RKDFENLAVQQNEAPNEFLARSFVIVERMKEIGVDMTETEVHHQIVRSLPDRF 348
            +S   W      ++ +T  +R  +   R++FE LAV+++E+ N++ AR+  IV RM   G  M  T +  +I+RS+P++F
Sbjct:   66 TSRSIWEATRRKYQGSTNVKRAHLQALRREFEVLAVKEDESVNDYFARTLAIVNRMSAQGETMEHTVIVEKILRSMPEKF 145
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53348.12745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2K3K2M2_TRIPR2.900e-535.80Retrovirus-related Pol polyprotein from transposon... [more]
A0A2Z6MEK1_TRISU5.650e-532.50Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53348contigH-paniculata_contig53348:831..1178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_001790.2
Exons1
Model size348
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930541.9964373-CDS-H-paniculata_contig53348:830..11781622930541.9964373-CDS-H-paniculata_contig53348:830..1178Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53348 831..1178 +
1691481340.377001-CDS-H-paniculata_contig53348:830..11781691481340.377001-CDS-H-paniculata_contig53348:830..1178Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53348 831..1178 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53348.12745.1prot_H-paniculata_contig53348.12745.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig53348 831..1178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig53348.12745.1

>prot_H-paniculata_contig53348.12745.1 ID=prot_H-paniculata_contig53348.12745.1|Name=mRNA_H-paniculata_contig53348.12745.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
EVGKKTEEELREKFSEAFQALIKSIEKCKQLQCAMVIDGSSSGAWSIFED
WFRDTTCGERTRVRKDFENLAVQQNEAPNEFLARSFVIVERMKEIGVDMT
ETEVHHQIVRSLPDRF
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mRNA from alignment at H-paniculata_contig53348:831..1178+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig53348.12745.1 ID=mRNA_H-paniculata_contig53348.12745.1|Name=mRNA_H-paniculata_contig53348.12745.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=348bp|location=Sequence derived from alignment at H-paniculata_contig53348:831..1178+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGTAGGTAAAAAGACTGAGGAAGAATTGCGTGAGAAGTTTTCCGAGGC
ATTTCAAGCACTCATCAAGTCAATTGAAAAGTGTAAGCAACTGCAATGTG
CAATGGTGATCGATGGCTCGTCATCTGGAGCGTGGAGTATCTTTGAGGAC
TGGTTCAGAGACACAACATGTGGAGAGCGTACTAGAGTTCGTAAAGACTT
TGAGAACTTGGCAGTACAACAAAATGAGGCACCAAACGAATTTCTGGCTA
GGTCTTTTGTCATTGTAGAGCGGATGAAGGAGATTGGTGTTGACATGACA
GAGACAGAAGTTCACCATCAGATCGTTCGCTCGCTTCCCGATCGTTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig53348:831..1178+

>mRNA_H-paniculata_contig53348.12745.1 ID=mRNA_H-paniculata_contig53348.12745.1|Name=mRNA_H-paniculata_contig53348.12745.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig53348:831..1178+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGTAGGTAAAAAGACTGAGGAAGAATTGCGTGAGAAGTTTTCCGAGGC
ATTTCAAGCACTCATCAAGTCAATTGAAAAGTGTAAGCAACTGCAATGTG
CAATGGTGATCGATGGCTCGTCATCTGGAGCGTGGAGTATCTTTGAGGAC
TGGTTCAGAGACACAACATGTGGAGAGCGTACTAGAGTTCGTAAAGACTT
TGAGAACTTGGCAGTACAACAAAATGAGGCACCAAACGAATTTCTGGCTA
GGTCTTTTGTCATTGTAGAGCGGATGAAGGAGATTGGTGTTGACATGACA
GAGACAGAAGTTCACCATCAGATCGTTCGCTCGCTTCCCGATCGTTTTGA
AGTAGGTAAAAAGACTGAGGAAGAATTGCGTGAGAAGTTTTCCGAGGCAT
TTCAAGCACTCATCAAGTCAATTGAAAAGTGTAAGCAACTGCAATGTGCA
ATGGTGATCGATGGCTCGTCATCTGGAGCGTGGAGTATCTTTGAGGACTG
GTTCAGAGACACAACATGTGGAGAGCGTACTAGAGTTCGTAAAGACTTTG
AGAACTTGGCAGTACAACAAAATGAGGCACCAAACGAATTTCTGGCTAGG
TCTTTTGTCATTGTAGAGCGGATGAAGGAGATTGGTGTTGACATGACAGA
GACAGAAGTTCACCATCAGATCGTTCGCTCGCTTCCCGATCGTTTT
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