prot_H-paniculata_contig53348.12745.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig53348.12745.1
Unique Nameprot_H-paniculata_contig53348.12745.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length116
Homology
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BLAST of mRNA_H-paniculata_contig53348.12745.1 vs. uniprot
Match: A0A2K3K2M2_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3K2M2_TRIPR)

HSP 1 Score: 51.6 bits (122), Expect = 2.900e-5
Identity = 29/81 (35.80%), Postives = 46/81 (56.79%), Query Frame = 0 
Query:   39 GSSSGAWSIFEDWFRDTTCGERTRV---RKDFENLAVQQNEAPNEFLARSFVIVERMKEIGVDMTETEVHHQIVRSLPDRF 116
            GS    W      ++ +T  +R ++   R+DFE LA++ NE+ N++ AR+  IV +M   G  M  T+V  +I+RSL  RF
Sbjct:   88 GSPRDIWEAMRTKYQGSTQVKRAQLQALRRDFEILAMKDNESINDYFARTLSIVNKMTAQGHKMESTDVVEKILRSLTSRF 168
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BLAST of mRNA_H-paniculata_contig53348.12745.1 vs. uniprot
Match: A0A2Z6MEK1_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6MEK1_TRISU)

HSP 1 Score: 50.4 bits (119), Expect = 5.650e-5
Identity = 26/80 (32.50%), Postives = 47/80 (58.75%), Query Frame = 0 
Query:   40 SSSGAWSIFEDWFRDTTCGERTRV---RKDFENLAVQQNEAPNEFLARSFVIVERMKEIGVDMTETEVHHQIVRSLPDRF 116
            +S   W      ++ +T  +R  +   R++FE LAV+++E+ N++ AR+  IV RM   G  M  T +  +I+RS+P++F
Sbjct:   66 TSRSIWEATRRKYQGSTNVKRAHLQALRREFEVLAVKEDESVNDYFARTLAIVNRMSAQGETMEHTVIVEKILRSMPEKF 145
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53348.12745.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2K3K2M2_TRIPR2.900e-535.80Retrovirus-related Pol polyprotein from transposon... [more]
A0A2Z6MEK1_TRISU5.650e-532.50Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 15..116
e-value: 2.8E-10
score: 40.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53348contigH-paniculata_contig53348:831..1178 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53348.12745.1mRNA_H-paniculata_contig53348.12745.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig53348 831..1178 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig53348.12745.1 ID=prot_H-paniculata_contig53348.12745.1|Name=mRNA_H-paniculata_contig53348.12745.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
EVGKKTEEELREKFSEAFQALIKSIEKCKQLQCAMVIDGSSSGAWSIFED
WFRDTTCGERTRVRKDFENLAVQQNEAPNEFLARSFVIVERMKEIGVDMT
ETEVHHQIVRSLPDRF
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