prot_H-paniculata_contig532.12725.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig532.12725.1
Unique Nameprot_H-paniculata_contig532.12725.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length232
Homology
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BLAST of mRNA_H-paniculata_contig532.12725.1 vs. uniprot
Match: D8LT68_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT68_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 5.050e-51
Identity = 88/139 (63.31%), Postives = 114/139 (82.01%), Query Frame = 0 
Query:    1 MRGLDPRIVNSVPLSKADTAGNRFLQLCNILSWATAAAASFAVLLDVVLLVSVKLKGAETALHCFGIPITGTVILAEREIGKILKLCAFLDSWLLKGFYISFTGTLLLAFEHDSAPLLDLWRDIVGFVLISAGVLYVTL 139
            ++G+DPR++ +VPLSK DT GN FL+LCN+LSW+T  AA+FAV+LDV+LL+ V ++GAE  LHCFGI +  ++ILAERE+  +L+ CAFL+SW+LKGF+ISF GTLLL FEH    LLDLWR I GF+LI+AGVLYV L
Sbjct:   23 VKGIDPRLMQTVPLSKQDTKGNSFLRLCNLLSWSTILAATFAVVLDVILLLVVGIEGAEATLHCFGILMALSIILAEREVVLLLRYCAFLESWVLKGFFISFVGTLLLGFEHGGI-LLDLWRRIGGFILIAAGVLYVML 160
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig532.12725.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LT68_ECTSI5.050e-5163.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013714Golgi apparatus membrane protein TVP15PANTHERPTHR28128FAMILY NOT NAMEDcoord: 26..142
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 93..112
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 124..145
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 30..53
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..29
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 190..214
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 146..189
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 113..123
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 54..92
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 215..231
NoneNo IPR availableTMHMMTMhelixcoord: 30..52
NoneNo IPR availableTMHMMTMhelixcoord: 88..110
NoneNo IPR availableTMHMMTMhelixcoord: 120..142

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig532contigH-paniculata_contig532:17119..20291 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig532.12725.1mRNA_H-paniculata_contig532.12725.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig532 15404..21238 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig532.12725.1 ID=prot_H-paniculata_contig532.12725.1|Name=mRNA_H-paniculata_contig532.12725.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=232bp
MRGLDPRIVNSVPLSKADTAGNRFLQLCNILSWATAAAASFAVLLDVVLL
VSVKLKGAETALHCFGIPITGTVILAEREIGKILKLCAFLDSWLLKGFYI
SFTGTLLLAFEHDSAPLLDLWRDIVGFVLISAGVLYVTLVCAQVFRRIGT
ALPLILLCHHGKGKRGVEARGYIMRSGTGSGRECTRLGRLTVFVSFLSVV
GVACSSSQLCFPVSRPPPLTHMTRARCVSTS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013714Golgi_TVP15