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Homology
BLAST of mRNA_H-paniculata_contig532.12725.1 vs. uniprot
Match: D8LT68_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT68_ECTSI) HSP 1 Score: 174 bits (441), Expect = 5.640e-47 Identity = 88/139 (63.31%), Postives = 114/139 (82.01%), Query Frame = 1
Query: 73 MRGLDPRIVNSVPLSKADTAGNRFLQLCNILSWATAAAASFAVLLDVVLLVSVKLKGAETALHCFGIPITGTVILAEREIGKILKLCAFLDSWLLKGFYISFTGTLLLAFEHDSAPLLDLWRDIVGFVLISAGVLYVTL 489
++G+DPR++ +VPLSK DT GN FL+LCN+LSW+T AA+FAV+LDV+LL+ V ++GAE LHCFGI + ++ILAERE+ +L+ CAFL+SW+LKGF+ISF GTLLL FEH LLDLWR I GF+LI+AGVLYV L
Sbjct: 23 VKGIDPRLMQTVPLSKQDTKGNSFLRLCNLLSWSTILAATFAVVLDVILLLVVGIEGAEATLHCFGILMALSIILAEREVVLLLRYCAFLESWVLKGFFISFVGTLLLGFEHGGI-LLDLWRRIGGFILIAAGVLYVML 160
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Golgi apparatus membrane protein TVP15 |
| Ec32 ortholog | Ec-12_005470.1 |
| Exons | 6 |
| Model size | 1946 |
| Cds size | 696 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig532.12725.1 >prot_H-paniculata_contig532.12725.1 ID=prot_H-paniculata_contig532.12725.1|Name=mRNA_H-paniculata_contig532.12725.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=232bp
MRGLDPRIVNSVPLSKADTAGNRFLQLCNILSWATAAAASFAVLLDVVLL VSVKLKGAETALHCFGIPITGTVILAEREIGKILKLCAFLDSWLLKGFYI SFTGTLLLAFEHDSAPLLDLWRDIVGFVLISAGVLYVTLVCAQVFRRIGT ALPLILLCHHGKGKRGVEARGYIMRSGTGSGRECTRLGRLTVFVSFLSVV GVACSSSQLCFPVSRPPPLTHMTRARCVSTS* back to topmRNA from alignment at H-paniculata_contig532:15404..21238- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig532.12725.1 ID=mRNA_H-paniculata_contig532.12725.1|Name=mRNA_H-paniculata_contig532.12725.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5835bp|location=Sequence derived from alignment at H-paniculata_contig532:15404..21238- (Halopteris paniculata Hal_grac_a_UBK monoicous) TGTAGAGTACACACACAGTCCAAGTCCCTCCTTGTGCATTGTGAGGTAGG
CCTTGCGTATTCTCTGCTGGCGAATAATAGCTTCGGAAACGCAACTTATG
TGATTGCTGAGAGAGGGTTTCAAGTACGTTACGACAGCATAGGTGGTTCA
ATGAAGTCTTTGAAGGAAAGCTACTTGATTATGCTTGTGATTACCCTGTG
TGAGTCATGTTATATATGTACTGTACTGTACCATCTCTTGTTGTCGGCCG
CAGCCGCAGCAGAGAGCTGCTTTGCACAACACGCACAAGTGAGATTTTTG
TCGTGGCAACCCACTTCATCGAAGCACTAAACTATCAGCGCGGTGTTCTC
ACCCCTGCCCCATAATCATTTCGTTGCAGCCTCGCAATAAACGGTAGCTT
CGTTTGCACATCGTTGCCTTGATAGTACAGATGAAATATCCTGTATTAAT
TTTAGACAACTTTCACCCTGATTTCACTCCGCACATCTATGAAATGCTTC
GCACAGTCCATTATGATGAAGGTAGAATTACTAGCTGCAAGACTGAATGC
AGGCACAAAGTGGGTGCATGTATTGAATGCAACAGGCAGAATTGACTGCT
TCATTCACTCACAGTCTGGGGACAAAACCGCATTAACTGAGAGGTTGTAA
AATCTCAACGCTTGCTTCGATGCGGGACAACTAAACTCGACTCCAATAAT
TCAATAAAAAATCCCCATCCAAGTCGACCAGTTCAGTCCAAGAGTCTTCT
CTGTGAACCATCTTGTCTTGGCTGCCACGCGCTACTAGTTTCAAGTTTTC
ACTCCGTCGAATACCAAAAGAGGGGCGTGCAGTAATCGTGTATTGACACC
ATTATCATATGGGGGGGGGCAGCACCTCCAATCTCCACCACTCTCCGCCG
TCGCCCGTGCCCCTATCCAGCTCCAGGCCTAGCGGCCATCTACGGAGATG
AGAGGGCTCGATCCCAGGATTGTGAACTCTGTGCCGTTGTCGAAGGCTGA
CACAGCAGGAAACCGTTTCCTTCAGCTATGCAATATCCTCAGCTGGGCAA
CGGCGGCAGCAGGTCTGTGAATGAGTGGGCATTAAATACAGACGAAAAAA
ATAGGGCACACGAGATTCTTGTGCGATAATTATTTGCGGAGGTGGACCAT
CTCAAAAGCTGCCATAACTTACAGCAATTCAACACTTGTCTATTTTTTTG
TGGCCACTCGACCACCCCCTACTCCCCACCTCCTCGGTTGTGTTTATATA
TTCGCGCGAATGGCCACTCGTTAGGAAGAACGTTTTCACGGCTTGCATCC
TCACACCCAGCACAGAGTACGCCCAATCGAAAGCACAGATCCTGCTCAGG
CCGATCCGTTGAGAAGAATTGTGTATTTGCGTTGGGTACAGCTTTCCCCC
GTCCCACACAACCCTTCCCTCGTTGTTTTACGCTGCAGACTGCGGGGCTT
TAGTTGGTCGAAGGTATACACGATTTTTCGAAGGTAATTCCAGATGGCAT
TTGTTGTGCTCACTGCCGCTTAACATCGCATGTCATGGGCAGCAATGCTG
TCGTCTGTGGTAGGAATGGAACCTTTGAGGTTTTTCACAGTGTCAAAGCA
AAGCGCTTATCTCACTCCGCGTTCTGCGCTCCGTCAGCGACTCCCCTCTT
ACCATTTACCTTCTTTGTCTTTCCCTATCCCCTCTACTCGAACATGTTCC
ACTGTGACTATGTCCCCCCAATCACGTCGGCAGCGTCGTTTGCCGTACTA
CTGGATGTTGTATTGCTTGTCTCCGTCAAGCTGAAGGTGTGTGTGTGTGT
GTGTTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGGGTCAAT
CGATCTGGACCAAGTGCGTTGTTTTTTGTGTACATGAGTTTCCTTCCCCC
ACAGCACACACATGTTTTACCATCCGGGGAGATACGTGTTGGGCGGGGCT
GTATCGCGTCGACACGGCAGCCTGTGCATGAGTCGAGGATTACGCTACTA
GTACAGGAGCGAGTTTTGTGGGGGGATGCGCAAAAGCGATTGCTTGTATG
GATGGCCATTGTGTAGATCATCAAACCATCGCAAAGATGACATGGCTCTT
TGTTTTGGCCCATGAGTGATCCCCCGTGCTGACGGATGTAGTTGAACGGG
ATTTTGCACTCGACATGAACGGGTTTTCTTCTGTACGGGGTATGATGATA
CGCGCCAAATCTGAAATGTATTATTGCCGATACCATAGTGAACAACGGTC
ACCCGCGACTTGTTTAGCATGCTCATGCTCACCCCCCCCCCCCCCAAGTC
AGGCAACGGCTATTCGTGGTTTCTGTAACAACACTTCCGTTTCGGAAACA
TTAGCTAGAGTAGAGTGCTGCAAGGACGCTTCCACAGATTGGCAAGACCA
ATATTCGAGGGCTTGCAGTTTATCAGCTCGACATGCTCCGATTCGGTCAT
GTTATAGTTTTGCTAATAAGCATACACAGCGGAGATTGAAGACAGCTGTA
TAACCTCAACAGGGTACAACGAAGTTGTTATAGTAGCTGTGGCAAGTGGG
TTGGCTGATTTGTGAATGAGGCTTGATAGATGAACGAGTATTTCATTTAT
ATGTTCATATGTTTATGTGCCCCCCCTATTGATTTTTTTTTGCTGATAAG
TGTAGATAACTGAAAATTGAAGTCAGCTGCATAATGTTAACATGGGTGCA
ACGGAGTCATAATATGAGATTCATAGTAATAGTTGATCTGACTGTGGCAA
GGGGGTTTTACTGAAAAAATCAGGATTTCAGTCAGCAAAATGAATTTTAT
TTGTTTATTTCATGTTTTATCGACGGTGCACATCCAAATGATGCAGTGAG
ATTCCTTGTGAAGGTCGCTGTAGTGCATATCGTGCATAGTTCCCCCCCCC
CCGCGGGAATCTTTCGTGAGACACACTTTGCTTTCCATCCCTGTCTGCTC
CAACCTTAGTTTCCTCCACCTGGTTCTTGCGCGTAACCTTCCCTTTTTTT
CCCTCGACGATAACGCGCAAAGGGCGCCGAAACCGCGTTGCACTGTTTCG
GCATCCCCATCACGGGCACGGTGATACTGGCAGAGCGAGAAATCGGGAAG
ATACTCAAGCTGTGCGCGTTTCTGGACTCGTGGTTGTTGAAGGGCTTCTA
CATCTCCTTGTGGGTGGTATTTTTCTCTAATGTACTAGAGCTATCCACTT
GTATACGTGTCCTTCCCATTGTCAGTTGATGTATACCGTCTTTGTCGGTG
TCCTAGATGTATCACTGACTGGGATTGCTCTAGAGTTTCACAAGCCAAGA
AATCTGGCCGCCGACTGCCCGTGCTTGCAGGGAGATAGAAGGGAGGGGAC
TGATCATCGGGCCTCGCTCGCCTGGGGTGTGACAGCATCATTGTACGCAC
CACGTGTCCTGAAGGGTTGTAGCGGGTGCAGCACGCATGCTGTAGCCGGG
GGGGGGAAGGTGGGGTACTGAAGTAATATTGATATTGTTCAGTGACTTGT
TCCACAAACACACACTGGTTGGATTTATGTCGGCTCTGCTAGTCTTTGCC
TTCGCGCATCATTTTTTTGCCCCACCTCAATAATGATGACTCCGACGGCC
TGTGTCGCATGGACGTGCTTAGTTTTTAGCCTTACTTGCTTGTTTACAAG
GCCCAAGGTCCCGTCCCCGCGTCCACTCCTTGTTTTACGTACCGCTCTAC
TGCTCTGTTTCCGGTCTGTTTGTTGGCAGTACGGGAACACTGCTGCTGGC
ATTTGAGCATGATAGTGCCCCGTTGTTGGACCTGTGGAGGGACATCGTTG
GATTTGTGCTGATAAGCGCAGGCGTGCTGTACGTGACATTGGTGTGTGCA
CAAGTGTTTCGACGAATTGGTACAGCCCTGCCGTTGATCTTGCTCTGCCA
TCATGGCAAGGGGAAGAGGGGTGTAGAGGCGCGGGGATACATAATGAGGA
GTGGTACTGGGTCAGGCCGGGAGTGTACTCGCCTCGGGCGGCTTACTGTT
TTTGTCAGTTTTTTGTCGGTTGTTGGTGTTGCCTGCTCCTCTTCTCAACT
CTGCTTCCCGGTGTCCCGACCGCCGCCCCTGACACATATGACCAGGGCGC
GTTGTGTTTCCACCAGCTGAGGAGTTATCAACTGGGCAAGATACGGAGAA
AGAAGGTAAGATTGGAATCGCACACGAGAAAAGAATTTCCGCCACAATAC
GCGTGGCGACCAGGGAGAGAGAGATGCATGTTTTGTTCTACCTTGTGACT
GCGTTCGTGCAGATTTTAATGAGTACGCAATCATCATTTCGCCGGGTGTT
CGGTTTCGTTACGTGGTATTGATAGTGTAATAACTTTCTCGCATTTGTGG
TCATCGGTGTAGTAGCCTCTGATGAACTATCTTCTTGATGTCCACAAGGT
TAAATGTCAAGAGCAAGTGGATGTATGAAAGCCAATATTTTTACTCGTTC
TTGTCTTCCTGTGGGCGGGGCCGGTGTGTACACGGATCGACTGCGGCTTC
TATATTGCAAGATTTTGCCGGGTCGTGTTTCGCCGTTTTTGTTTCTCAAC
CTGTTTTTTCTCGCACACACGTCAATCGAATCGCGAACAATGATTTCAGG
CCGTTTGGGTTTGTTATGCGTGGCTCATCTCGTTGGTGTTACCATGGGTG
CATGTTCTTGTCCATTTGATTTTGTGTCTTGCGTGGGGGCAGCTGATGAG
GCAGGAGCTGTCAACTCTCAGCGCCCAAAAGCAGGAAATCGAGAAGTTGC
TGGCCGACACCGAGTCCAAGCTGCAGCTGTTATGAAGGATAGTTAACACC
TTGATGTAATCGACGGGGCGGCGTGCATGTAATCCGGATGGACCATGACA
GGGGCGGCGACTGCAGATGCCATGGTTACTGGTGGCGTTTTTGTGGAAAT
GATTTTTATGTGATTTTGATAGTTGCGTACCACCGTGCAGTATGTAAGTA
ATGTGTGCTTCGAGTTAAGGAGTGGGCTCTACAGTTTGGTGGTGTTGGTG
GTTGTGATGGTGGAGGCACAGTAAGTGAGGAGGGGGGTTAGGCTACGTCA
GGCAGCGTTGGGTTAGCATTGATGTTTCTCCTGTATGGAGTACCATGTTG
TTACTAAATATTATATCTCATACCTGGTGGCGTGAAACCATGGTCTGCGA
CCTATAGCCCGTGCATAATACGTTTACTACACGAGTAGAGCGAGTCGATC
GTAGTCGAGGCAGTATCCCGTGAGATTTTGTCTATTGGTGGTTTTGGGCG
GATATCGTGGTTTTGTTACATTTAGCAACCCAACGAAAACGCCAAGTGAA
GCTGTATTTTTTTAACATATACATGCCAACAACTTTTCTACATTTGGATA
GGTATGTATGGATCATGACCACGTGTCAACCTGCCCTTGTTTTAGTCGTC
GACACTGCCTGCTGGTGGAGGTTATCTTCAACAAGTCGAACTTTGAAATT
ACTGGCGACAATGCCTACGTTGATCTTGGAGCGTGTATTCATTCTCTTGT
TTGCAACTACCGTAGCGTTCTTCGGAGAACATAAGAAAAGGGTATAATCG
GTTTGTTTCGACTCTCCGCGGGTACAGACCAGCCTTCAGATTATGTTTTT
TCGTGTTTTAGTTATTTGGGGTGGTGTATAACTCCAGACCACGGAAGGAT
TGATATGTACGTGCCATGTTGTCGAATTGTTGACGGATATGTGATTAAGG
CCATCTTCCATAGGGCCGAAAAAAGTCTCCACTCGAAAAACATGTATTAC
TATTTTTCGCTGTGCAAAAAATTGATAATGAAAAATTGGTTCCTAGCCTT
AACAGGTTAAAAAAATTAAATGCGGTTTATTGGAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig532:15404..21238- >mRNA_H-paniculata_contig532.12725.1 ID=mRNA_H-paniculata_contig532.12725.1|Name=mRNA_H-paniculata_contig532.12725.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1392bp|location=Sequence derived from alignment at H-paniculata_contig532:15404..21238- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGAGAGGGCTCGATCCCAGGATTGTGAACTCTGTGCCGTTGTCGAAGGC TGACACAGCAGGAAACCGTTTCCTTCAGCTATGCAATATCCTCAGCTGGG CAACGGCGGCAGCAGATGAGAGGGCTCGATCCCAGGATTGTGAACTCTGT GCCGTTGTCGAAGGCTGACACAGCAGGAAACCGTTTCCTTCAGCTATGCA ATATCCTCAGCTGGGCAACGGCGGCAGCAGCGTCGTTTGCCGTACTACTG GATGTTGTATTGCTTGTCTCCGTCAAGCTGAAGCGTCGTTTGCCGTACTA CTGGATGTTGTATTGCTTGTCTCCGTCAAGCTGAAGGGCGCCGAAACCGC GTTGCACTGTTTCGGCATCCCCATCACGGGCACGGTGATACTGGCAGAGC GAGAAATCGGGAAGATACTCAAGCTGTGCGCGTTTCTGGACTCGTGGTTG TTGAAGGGCTTCTACATCTCCTTGGCGCCGAAACCGCGTTGCACTGTTTC GGCATCCCCATCACGGGCACGGTGATACTGGCAGAGCGAGAAATCGGGAA GATACTCAAGCTGTGCGCGTTTCTGGACTCGTGGTTGTTGAAGGGCTTCT ACATCTCCTTTACGGGAACACTGCTGCTGGCATTTGAGCATGATAGTGCC CCGTTGTTGGACCTGTGGAGGGACATCGTTGGATTTGTGCTGATAAGCGC AGGCGTGCTGTACGTGACATTGGTGTGTGCACAAGTGTTTCGACGAATTG GTACAGCCCTGCCGTTGATCTTGCTCTGCCATCATGGCAAGGGGAAGAGG GGTGTAGAGGCGCGGGGATACATAATGAGGAGTGGTACTGGGTCAGGCCG GGAGTGTACTCGCCTCGGGCGGCTTACTGTTTTTGTCAGTTTTTTGTCGG TTGTTGGTGTTGCCTGCTCCTCTTCTCAACTCTGCTTCCCGGTGTCCCGA CCGCCGCCCCTGACACATATGACCAGGGCGCGTTGTGTTTCCACCAGCTG ATACGGGAACACTGCTGCTGGCATTTGAGCATGATAGTGCCCCGTTGTTG GACCTGTGGAGGGACATCGTTGGATTTGTGCTGATAAGCGCAGGCGTGCT GTACGTGACATTGGTGTGTGCACAAGTGTTTCGACGAATTGGTACAGCCC TGCCGTTGATCTTGCTCTGCCATCATGGCAAGGGGAAGAGGGGTGTAGAG GCGCGGGGATACATAATGAGGAGTGGTACTGGGTCAGGCCGGGAGTGTAC TCGCCTCGGGCGGCTTACTGTTTTTGTCAGTTTTTTGTCGGTTGTTGGTG TTGCCTGCTCCTCTTCTCAACTCTGCTTCCCGGTGTCCCGACCGCCGCCC CTGACACATATGACCAGGGCGCGTTGTGTTTCCACCAGCTGA back to top
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