mRNA_H-paniculata_contig5310.12717.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5310.12717.1
Unique NamemRNA_H-paniculata_contig5310.12717.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5310.12717.1 vs. uniprot
Match: D7G8A0_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A0_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 9.240e-23
Identity = 51/64 (79.69%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:    4 GMASHSWLLKDPAMLSRAVARVFHGIGSVCFPAAKWRDSTFWARYREYSFGEVKSKLEQAFYAR 195
            GMA HSWLLKD  ML+RAVARVFHGIGSV FPA KWR+S FWARYR +SF EVKSKLE AF AR
Sbjct: 2135 GMAPHSWLLKDVPMLARAVARVFHGIGSVSFPATKWRESAFWARYRHHSFREVKSKLEIAFGAR 2198
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BLAST of mRNA_H-paniculata_contig5310.12717.1 vs. uniprot
Match: A0A835Z8Q0_9STRA (DNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Q0_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 3.230e-10
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   10 ASHSWLLKDPAMLSRAVARVFHGIGSVCFPAAKWRDSTFWARYREYSFGEVKSKL 174
            A H+WL+++    + A AR+ HG+GS   PAA+WR STFW RYREY+F +V + L
Sbjct:  811 APHAWLMRERDAAAAAAARIMHGLGSAALPAARWRASTFWGRYREYAFEDVIAAL 865
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5310.12717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8A0_ECTSI9.240e-2379.69DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A835Z8Q0_9STRA3.230e-1050.91DNA helicase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5310contigH-paniculata_contig5310:4545..6402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.0
Seed ortholog evalue2.8e-20
Seed eggNOG ortholog2880.D7G8A0
KEGG koko:K10730,ko:K12662
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
EggNOG free text desc.four-way junction helicase activity
EggNOG OGsCOG0514@1,KOG0351@2759
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-19_003700.1
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03041,ko03400
Exons3
Model size658
Cds size198
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5310.12717.1prot_H-paniculata_contig5310.12717.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5310 4999..6396 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930538.5586188-UTR-H-paniculata_contig5310:4544..49981622930538.5586188-UTR-H-paniculata_contig5310:4544..4998Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5310 4545..4998 -
1691481338.951613-UTR-H-paniculata_contig5310:4544..49981691481338.951613-UTR-H-paniculata_contig5310:4544..4998Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5310 4545..4998 -
1622930538.6296656-UTR-H-paniculata_contig5310:6396..64021622930538.6296656-UTR-H-paniculata_contig5310:6396..6402Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5310 6397..6402 -
1691481338.9983304-UTR-H-paniculata_contig5310:6396..64021691481338.9983304-UTR-H-paniculata_contig5310:6396..6402Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5310 6397..6402 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930538.575614-CDS-H-paniculata_contig5310:4998..50431622930538.575614-CDS-H-paniculata_contig5310:4998..5043Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5310 4999..5043 -
1691481338.9638033-CDS-H-paniculata_contig5310:4998..50431691481338.9638033-CDS-H-paniculata_contig5310:4998..5043Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5310 4999..5043 -
1622930538.5937004-CDS-H-paniculata_contig5310:5722..58481622930538.5937004-CDS-H-paniculata_contig5310:5722..5848Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5310 5723..5848 -
1691481338.975075-CDS-H-paniculata_contig5310:5722..58481691481338.975075-CDS-H-paniculata_contig5310:5722..5848Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5310 5723..5848 -
1622930538.6111047-CDS-H-paniculata_contig5310:6369..63961622930538.6111047-CDS-H-paniculata_contig5310:6369..6396Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5310 6370..6396 -
1691481338.9857643-CDS-H-paniculata_contig5310:6369..63961691481338.9857643-CDS-H-paniculata_contig5310:6369..6396Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5310 6370..6396 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5310.12717.1

>prot_H-paniculata_contig5310.12717.1 ID=prot_H-paniculata_contig5310.12717.1|Name=mRNA_H-paniculata_contig5310.12717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
MASHSWLLKDPAMLSRAVARVFHGIGSVCFPAAKWRDSTFWARYREYSFG
EVKSKLEQAFYARSR*
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mRNA from alignment at H-paniculata_contig5310:4545..6402-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5310.12717.1 ID=mRNA_H-paniculata_contig5310.12717.1|Name=mRNA_H-paniculata_contig5310.12717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1858bp|location=Sequence derived from alignment at H-paniculata_contig5310:4545..6402- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGGTATGGCATCGCACTCGTGGTTGCTGAAAGTGAGTCGTTCTTGTCT
TGCGTGGATTGTAATATCTATTCTTCGCCTTGTATACAGAGAGAAACAAA
CAGACACAGAGGGAGATTCTCGTTACTGGCGATGAGCTTGTTCACAGCAG
CATCAGATGTGCATCTTCCGCGGCGGGGGTGTAGGGGTTGTGGGTGTGAT
CCGTCCAGTCGCTGCGTTTTTGTAGTAATAGTCTGTCATGTGATTTTTTT
CAGCACCAAAGGTATCGCCAGGCGATGCTGACGCGCAAAGGCCAACACCC
AGGAAAGCTTCAAGATTAGTTCAGACCAGAAGACGAGAATAGCCACCATC
CTGACAGTTGACAAAACGCTTTGGATATCGGTCAAAAGTACGCAGTTTAA
CACGGTGACTCGAACCGCAACTCGCATCCCTACCGATTTTCCTCATATGG
TTGCTCGCTCGTTTCCTGCTGTGTGGTTTTATTGCCCTCCGTCGCCGCGG
CGGCCGCCGTACCCGAAATGGCGAAATTACGGCCGAAACTGCACTCCGGA
GCAGGATCCGGCAATGTTGTCAAGGGCGGTGGCGAGAGTGTTCCACGGCA
TCGGAAGCGTGTGCTTCCCCGCAGCTAAGTGGAGGGACAGCACATTTTGG
GCGAGGTATCGGGAGTATTCTTTCGGAGAGGTGCGTTTCGTTCCACTGAC
GGAAGGCAAACATCGCAATTCCGTGCACTTTGGATCAGCTTAACCGTAGC
GCTCCGCTCGGGTATATTGCAGTCATTCTCCAGGGATAAATGCTTTATGC
TCAATTCATTTGTATATATGCACTTCGAGTAGGCTCTATATTTGTTGTTT
TCCCCCCTCAGTTCCCTTTGAAGGAAGCATCTCAAACGAAAGATTGTGGT
AAAGGTGCAATTGAGTTTTTAGTCTGTCCCGTTTTGTCGACTGTTACGTC
GCCGATTTTACGTTGGTTGTTGGAGGGGATGTGGGGAAGTACACCGCATT
TACCTCGCAACAGCGAAAAAAAACTCGTTCAATCTAGGATATAGAGAGGA
CCTCGAGCATCTCGGACCACTTGCGGACAAGCCTGGACGCTCCCCTCGTC
CTCTCAAGCAGTAGTAAACAGCAGTTCTGCTGTATACAGTTGTGGGTCAA
CCTCTGGCGTCCCGAACACCGATCCATAGCATATTGCTGATACGAATGTA
TGTTTTTGGGTGTCTTGTGCTCTGTTGGGTCAGTCAGGGTGTTTGTAGCA
ATTATCGCATTTTTGAGAAGGCTGCACTTACATCATCTCGGCGGCCGTGC
GTGCTTTCTTCCCGTTGGCCCTCGGGGTAACCCCGCGATTTGGTGTCGAT
AATTCACAGGTCAAAAGCAAGCTGGAGCAGGCATTTTATGCACGAAGCAG
ATAGCGTTCCGTTCCCGTTATGGTGTCAACATGCTGGAGGTTTCGTGTTC
TCCGCTTCCCCTTAAGAAATCGTTTCGGCGATAATAGATCTACTGGTGTA
TGGGGTGGCTCGTCGATTTTGAGTATGTGAAGTGAAGAGCAGCGCCTACC
GGAGGGTTCGTGGCGACCGGCATTCTGATTACAAGTTGTCTCTTTCGCTT
GTGCACTGCCTTGATGAAAACTATCCGTAGGTTTACAGTACCGAACGTGT
TACAGATGGAGGGAACTAAGGGAAGGTAACGCGGGGGGCGTTCGACGGTA
CTGGTGGGTTGTAAACGAAGATTCGTGTAGTAGCGAGATTGCGACGTTCA
CTTCCTTCAAAGGAAAAGGTAACAGCAAACCTTATCGTAGAGAACTGTGC
GTGTATTCCTCACCTTTTTGGTATCTTTTTTTGTGTTTTTGCGCAAACAC
ACGGCGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig5310:4545..6402-

>mRNA_H-paniculata_contig5310.12717.1 ID=mRNA_H-paniculata_contig5310.12717.1|Name=mRNA_H-paniculata_contig5310.12717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig5310:4545..6402- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCATCGCACTCGTGGTTGCTGAAAATGGCATCGCACTCGTGGTTGCT
GAAAGATCCGGCAATGTTGTCAAGGGCGGTGGCGAGAGTGTTCCACGGCA
TCGGAAGCGTGTGCTTCCCCGCAGCTAAGTGGAGGGACAGCACATTTTGG
GCGAGGTATCGGGAGTATTCTTTCGGAGAGGATCCGGCAATGTTGTCAAG
GGCGGTGGCGAGAGTGTTCCACGGCATCGGAAGCGTGTGCTTCCCCGCAG
CTAAGTGGAGGGACAGCACATTTTGGGCGAGGTATCGGGAGTATTCTTTC
GGAGAGGTCAAAAGCAAGCTGGAGCAGGCATTTTATGCACGAAGCAGATA
GGTCAAAAGCAAGCTGGAGCAGGCATTTTATGCACGAAGCAGATAG
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