mRNA_H-paniculata_contig53054.12707.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig53054.12707.1
Unique NamemRNA_H-paniculata_contig53054.12707.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig53054.12707.1 vs. uniprot
Match: UPI000BBEF31C (uncharacterized protein LOC111199942 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBEF31C)

HSP 1 Score: 55.1 bits (131), Expect = 1.580e-6
Identity = 38/106 (35.85%), Postives = 58/106 (54.72%), Query Frame = 1 
Query:    1 GMEIWICDNGATKHMAHNSDFLLNYQECYGHVRLADGNRLPIEGVGMLFLQFRFDSKVVLMKLTQVAFTPLLSHHLLSLGKFADFGHEYRCSREGLRIHLKTGRVL 318
            G++  I D+GA+ HM  +   + N +  +GHV +A+G+R+PI GVG L L F  DSK + M        P  + +LLS+ K +D G EY  +    + HL    +L
Sbjct:  395 GIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKALYM--------PEFASNLLSV-KRSDNGGEY--TGHAFKNHLAQHGIL 488
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BLAST of mRNA_H-paniculata_contig53054.12707.1 vs. uniprot
Match: UPI000BBE966B (uncharacterized protein LOC106448712 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBE966B)

HSP 1 Score: 55.1 bits (131), Expect = 1.610e-6
Identity = 38/106 (35.85%), Postives = 58/106 (54.72%), Query Frame = 1 
Query:    1 GMEIWICDNGATKHMAHNSDFLLNYQECYGHVRLADGNRLPIEGVGMLFLQFRFDSKVVLMKLTQVAFTPLLSHHLLSLGKFADFGHEYRCSREGLRIHLKTGRVL 318
            G++  I D+GA+ HM  +   + N +  +GHV +A+G+R+PI GVG L L F  DSK + M        P  + +LLS+ K +D G EY  +    + HL    +L
Sbjct:  410 GIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKALYM--------PEFTSNLLSV-KRSDNGGEY--TGHAFKNHLAQHGIL 503
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BLAST of mRNA_H-paniculata_contig53054.12707.1 vs. uniprot
Match: UPI000BBECC90 (uncharacterized protein LOC106373021 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBECC90)

HSP 1 Score: 55.1 bits (131), Expect = 1.620e-6
Identity = 38/106 (35.85%), Postives = 58/106 (54.72%), Query Frame = 1 
Query:    1 GMEIWICDNGATKHMAHNSDFLLNYQECYGHVRLADGNRLPIEGVGMLFLQFRFDSKVVLMKLTQVAFTPLLSHHLLSLGKFADFGHEYRCSREGLRIHLKTGRVL 318
            G++  I D+GA+ HM  +   + N +  +GHV +A+G+R+PI GVG L L F  DSK + M        P  + +LLS+ K +D G EY  +    + HL    +L
Sbjct:  409 GIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKALYM--------PEFTSNLLSV-KRSDNGGEY--TGHAFKNHLAQHGIL 502
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BLAST of mRNA_H-paniculata_contig53054.12707.1 vs. uniprot
Match: UPI0006AB2FB3 (uncharacterized protein LOC106407804 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AB2FB3)

HSP 1 Score: 52.0 bits (123), Expect = 1.860e-5
Identity = 31/84 (36.90%), Postives = 48/84 (57.14%), Query Frame = 1 
Query:    1 GMEIWICDNGATKHMAHNSDFLLNYQECYGHVRLADGNRLPIEGVGMLFLQFRFDSKVVLMKLTQVAFTPLLSHHLLSLGKFAD 252
            G++  I D+GA+ HM  +   + N +  +GHV +A+G+R+PI GVG L L F  DSK + M        P  + +LLS+ +  D
Sbjct:  414 GIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKALYM--------PEFTSNLLSVKRCTD 488
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BLAST of mRNA_H-paniculata_contig53054.12707.1 vs. uniprot
Match: UPI0006AAA996 (uncharacterized protein LOC106379087 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AAA996)

HSP 1 Score: 51.6 bits (122), Expect = 2.620e-5
Identity = 38/107 (35.51%), Postives = 56/107 (52.34%), Query Frame = 1 
Query:    1 GMEIWICDNGATKHMAHNSDFLLNYQECYGHVRLADGNRLPIEGVGMLFLQFRFDSKVVLMKLTQVAFTPLLSHHLLSLGKF-ADFGHEYRCSREGLRIHLKTGRVL 318
            G++  I D+GA+ HM  +   + N +  +GHV +A+G+R+PI GVG L L F  DSK + M      FT  L  +   +  F +D G EY  +    R HL    +L
Sbjct:  396 GIKPMIIDSGASHHMISDDSLIKNIELAHGHVMIANGDRIPIRGVGDLKL-FNKDSKALYMP----EFTSNLLSYNAKIKIFRSDNGGEY--TGHDFRNHLAQHGIL 495
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BLAST of mRNA_H-paniculata_contig53054.12707.1 vs. uniprot
Match: UPI000BBEE580 (uncharacterized protein LOC106448715 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBEE580)

HSP 1 Score: 51.6 bits (122), Expect = 2.650e-5
Identity = 30/81 (37.04%), Postives = 49/81 (60.49%), Query Frame = 1 
Query:    1 GMEIWICDNGATKHMAHNSDFLLNYQECYGHVRLADGNRLPIEGVGMLFLQFRFDSKVVLM-KLTQVAFTPLLSHHLLSLG 240
            G++  I D+GA+ HM  +   + N +  +GHV +A+G+R+PI+GVG L L F  DSK + M + T    + + S+ L+  G
Sbjct:  414 GIKPLIVDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIKGVGDLKL-FNKDSKALYMPEFTSNLLSDIESNKLIGQG 493
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BLAST of mRNA_H-paniculata_contig53054.12707.1 vs. uniprot
Match: Q9FWZ5_ARATH (Putative retroelement polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9FWZ5_ARATH)

HSP 1 Score: 51.6 bits (122), Expect = 2.690e-5
Identity = 30/74 (40.54%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:   16 ICDNGATKHMAHNSDFLLNYQECYGHVRLADGNRLPIEGVGMLFLQFRFDSKVVLMKLTQVAFTPLLSHHLLSL 237
            + D+GA+ HM  NS+ L N +   GHV +A+G+++PIEG+G L L F  DSK          F P  + +LLS+
Sbjct:  330 VIDSGASHHMISNSNLLDNIEPALGHVIIANGDKVPIEGIGNLKL-FNKDSKAF--------FMPKFTSNLLSV 394
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BLAST of mRNA_H-paniculata_contig53054.12707.1 vs. uniprot
Match: A0A178U605_ARATH (ULP_PROTEASE domain-containing protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A178U605_ARATH)

HSP 1 Score: 51.6 bits (122), Expect = 2.710e-5
Identity = 30/74 (40.54%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:   16 ICDNGATKHMAHNSDFLLNYQECYGHVRLADGNRLPIEGVGMLFLQFRFDSKVVLMKLTQVAFTPLLSHHLLSL 237
            + D+GA+ HM  NS+ L N +   GHV +A+G+++PIEG+G L L F  DSK          F P  + +LLS+
Sbjct:  343 VIDSGASHHMISNSNLLDNIEPALGHVIIANGDKVPIEGIGNLKL-FNKDSKAF--------FMPKFTSNLLSV 407
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53054.12707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
UPI000BBEF31C1.580e-635.85uncharacterized protein LOC111199942 n=1 Tax=Brass... [more]
UPI000BBE966B1.610e-635.85uncharacterized protein LOC106448712 n=1 Tax=Brass... [more]
UPI000BBECC901.620e-635.85uncharacterized protein LOC106373021 n=1 Tax=Brass... [more]
UPI0006AB2FB31.860e-536.90uncharacterized protein LOC106407804 n=1 Tax=Brass... [more]
UPI0006AAA9962.620e-535.51uncharacterized protein LOC106379087 n=1 Tax=Brass... [more]
UPI000BBEE5802.650e-537.04uncharacterized protein LOC106448715 n=1 Tax=Brass... [more]
Q9FWZ5_ARATH2.690e-540.54Putative retroelement polyprotein n=1 Tax=Arabidop... [more]
A0A178U605_ARATH2.710e-540.54ULP_PROTEASE domain-containing protein n=1 Tax=Ara... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53054contigH-paniculata_contig53054:467..784 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.5
Seed ortholog evalue5.6e-07
Seed eggNOG ortholog3712.Bo3g019830.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,COG2801@1,KOG0017@2759
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size318
Cds size315
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930537.0421753-CDS-H-paniculata_contig53054:466..7811622930537.0421753-CDS-H-paniculata_contig53054:466..781Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53054 467..781 -
1691481338.1615162-CDS-H-paniculata_contig53054:466..7811691481338.1615162-CDS-H-paniculata_contig53054:466..781Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53054 467..781 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930537.055714-UTR-H-paniculata_contig53054:781..7841622930537.055714-UTR-H-paniculata_contig53054:781..784Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig53054 782..784 -
1691481338.1756747-UTR-H-paniculata_contig53054:781..7841691481338.1756747-UTR-H-paniculata_contig53054:781..784Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig53054 782..784 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53054.12707.1prot_H-paniculata_contig53054.12707.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig53054 467..781 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig53054.12707.1

>prot_H-paniculata_contig53054.12707.1 ID=prot_H-paniculata_contig53054.12707.1|Name=mRNA_H-paniculata_contig53054.12707.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
MEIWICDNGATKHMAHNSDFLLNYQECYGHVRLADGNRLPIEGVGMLFLQ
FRFDSKVVLMKLTQVAFTPLLSHHLLSLGKFADFGHEYRCSREGLRIHLK
TGRVL
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mRNA from alignment at H-paniculata_contig53054:467..784-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig53054.12707.1 ID=mRNA_H-paniculata_contig53054.12707.1|Name=mRNA_H-paniculata_contig53054.12707.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=318bp|location=Sequence derived from alignment at H-paniculata_contig53054:467..784- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGATGGAAATCTGGATTTGTGATAATGGTGCAACAAAACACATGGCCCA
TAATTCAGATTTTCTTTTGAATTACCAGGAATGTTATGGGCATGTACGCC
TTGCAGATGGTAATCGTCTCCCGATCGAAGGAGTTGGCATGCTATTCCTT
CAATTTCGATTCGACTCCAAGGTTGTTTTGATGAAGTTAACTCAGGTTGC
GTTCACACCACTTCTCAGTCATCACCTTCTATCTCTAGGGAAATTCGCGG
ACTTTGGTCATGAATATAGGTGTTCGCGCGAAGGGCTCAGAATTCACCTT
AAAACAGGGAGAGTTCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig53054:467..784-

>mRNA_H-paniculata_contig53054.12707.1 ID=mRNA_H-paniculata_contig53054.12707.1|Name=mRNA_H-paniculata_contig53054.12707.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig53054:467..784- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAATCTGGATTTGTGATAATGGTGCAACAAAACACATGGCCCATAA
TTCAGATTTTCTTTTGAATTACCAGGAATGTTATGGGCATGTACGCCTTG
CAGATGGTAATCGTCTCCCGATCGAAGGAGTTGGCATGCTATTCCTTCAA
TTTCGATTCGACTCCAAGGTTGTTTTGATGAAGTTAACTCAGGTTGCGTT
CACACCACTTCTCAGTCATCACCTTCTATCTCTAGGGAAATTCGCGGACT
TTGGTCATGAATATAGGTGTTCGCGCGAAGGGCTCAGAATTCACCTTAAA
ACAGGGAGAGTTCTGATGGAAATCTGGATTTGTGATAATGGTGCAACAAA
ACACATGGCCCATAATTCAGATTTTCTTTTGAATTACCAGGAATGTTATG
GGCATGTACGCCTTGCAGATGGTAATCGTCTCCCGATCGAAGGAGTTGGC
ATGCTATTCCTTCAATTTCGATTCGACTCCAAGGTTGTTTTGATGAAGTT
AACTCAGGTTGCGTTCACACCACTTCTCAGTCATCACCTTCTATCTCTAG
GGAAATTCGCGGACTTTGGTCATGAATATAGGTGTTCGCGCGAAGGGCTC
AGAATTCACCTTAAAACAGGGAGAGTTCTG
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