prot_H-paniculata_contig53054.12707.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig53054.12707.1
Unique Nameprot_H-paniculata_contig53054.12707.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length105
Homology
BLAST of mRNA_H-paniculata_contig53054.12707.1 vs. uniprot
Match: UPI000BBEF31C (uncharacterized protein LOC111199942 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBEF31C)

HSP 1 Score: 53.9 bits (128), Expect = 3.890e-6
Identity = 37/101 (36.63%), Postives = 55/101 (54.46%), Query Frame = 0
Query:    5 ICDNGATKHMAHNSDFLLNYQECYGHVRLADGNRLPIEGVGMLFLQFRFDSKVVLMKLTQVAFTPLLSHHLLSLGKFADFGHEYRCSREGLRIHLKTGRVL 105
            I D+GA+ HM  +   + N +  +GHV +A+G+R+PI GVG L L F  DSK + M        P  + +LLS+ K +D G EY  +    + HL    +L
Sbjct:  400 IIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKALYM--------PEFASNLLSV-KRSDNGGEY--TGHAFKNHLAQHGIL 488          
BLAST of mRNA_H-paniculata_contig53054.12707.1 vs. uniprot
Match: UPI000BBE966B (uncharacterized protein LOC106448712 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBE966B)

HSP 1 Score: 53.9 bits (128), Expect = 3.960e-6
Identity = 37/101 (36.63%), Postives = 55/101 (54.46%), Query Frame = 0
Query:    5 ICDNGATKHMAHNSDFLLNYQECYGHVRLADGNRLPIEGVGMLFLQFRFDSKVVLMKLTQVAFTPLLSHHLLSLGKFADFGHEYRCSREGLRIHLKTGRVL 105
            I D+GA+ HM  +   + N +  +GHV +A+G+R+PI GVG L L F  DSK + M        P  + +LLS+ K +D G EY  +    + HL    +L
Sbjct:  415 IIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKALYM--------PEFTSNLLSV-KRSDNGGEY--TGHAFKNHLAQHGIL 503          
BLAST of mRNA_H-paniculata_contig53054.12707.1 vs. uniprot
Match: UPI000BBECC90 (uncharacterized protein LOC106373021 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBECC90)

HSP 1 Score: 53.9 bits (128), Expect = 3.970e-6
Identity = 37/101 (36.63%), Postives = 55/101 (54.46%), Query Frame = 0
Query:    5 ICDNGATKHMAHNSDFLLNYQECYGHVRLADGNRLPIEGVGMLFLQFRFDSKVVLMKLTQVAFTPLLSHHLLSLGKFADFGHEYRCSREGLRIHLKTGRVL 105
            I D+GA+ HM  +   + N +  +GHV +A+G+R+PI GVG L L F  DSK + M        P  + +LLS+ K +D G EY  +    + HL    +L
Sbjct:  414 IIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKALYM--------PEFTSNLLSV-KRSDNGGEY--TGHAFKNHLAQHGIL 502          
BLAST of mRNA_H-paniculata_contig53054.12707.1 vs. uniprot
Match: Q9FWZ5_ARATH (Putative retroelement polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9FWZ5_ARATH)

HSP 1 Score: 51.6 bits (122), Expect = 2.600e-5
Identity = 30/74 (40.54%), Postives = 44/74 (59.46%), Query Frame = 0
Query:    5 ICDNGATKHMAHNSDFLLNYQECYGHVRLADGNRLPIEGVGMLFLQFRFDSKVVLMKLTQVAFTPLLSHHLLSL 78
            + D+GA+ HM  NS+ L N +   GHV +A+G+++PIEG+G L L F  DSK          F P  + +LLS+
Sbjct:  330 VIDSGASHHMISNSNLLDNIEPALGHVIIANGDKVPIEGIGNLKL-FNKDSKAF--------FMPKFTSNLLSV 394          
BLAST of mRNA_H-paniculata_contig53054.12707.1 vs. uniprot
Match: A0A178U605_ARATH (ULP_PROTEASE domain-containing protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A178U605_ARATH)

HSP 1 Score: 51.6 bits (122), Expect = 2.620e-5
Identity = 30/74 (40.54%), Postives = 44/74 (59.46%), Query Frame = 0
Query:    5 ICDNGATKHMAHNSDFLLNYQECYGHVRLADGNRLPIEGVGMLFLQFRFDSKVVLMKLTQVAFTPLLSHHLLSL 78
            + D+GA+ HM  NS+ L N +   GHV +A+G+++PIEG+G L L F  DSK          F P  + +LLS+
Sbjct:  343 VIDSGASHHMISNSNLLDNIEPALGHVIIANGDKVPIEGIGNLKL-FNKDSKAF--------FMPKFTSNLLSV 407          
BLAST of mRNA_H-paniculata_contig53054.12707.1 vs. uniprot
Match: UPI0006AB2FB3 (uncharacterized protein LOC106407804 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AB2FB3)

HSP 1 Score: 50.8 bits (120), Expect = 4.580e-5
Identity = 30/79 (37.97%), Postives = 45/79 (56.96%), Query Frame = 0
Query:    5 ICDNGATKHMAHNSDFLLNYQECYGHVRLADGNRLPIEGVGMLFLQFRFDSKVVLMKLTQVAFTPLLSHHLLSLGKFAD 83
            I D+GA+ HM  +   + N +  +GHV +A+G+R+PI GVG L L F  DSK + M        P  + +LLS+ +  D
Sbjct:  419 IIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKALYM--------PEFTSNLLSVKRCTD 488          
BLAST of mRNA_H-paniculata_contig53054.12707.1 vs. uniprot
Match: UPI000BBEE580 (uncharacterized protein LOC106448715 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBEE580)

HSP 1 Score: 50.4 bits (119), Expect = 6.520e-5
Identity = 29/76 (38.16%), Postives = 46/76 (60.53%), Query Frame = 0
Query:    5 ICDNGATKHMAHNSDFLLNYQECYGHVRLADGNRLPIEGVGMLFLQFRFDSKVVLM-KLTQVAFTPLLSHHLLSLG 79
            I D+GA+ HM  +   + N +  +GHV +A+G+R+PI+GVG L L F  DSK + M + T    + + S+ L+  G
Sbjct:  419 IVDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIKGVGDLKL-FNKDSKALYMPEFTSNLLSDIESNKLIGQG 493          
BLAST of mRNA_H-paniculata_contig53054.12707.1 vs. uniprot
Match: UPI0006AAA996 (uncharacterized protein LOC106379087 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AAA996)

HSP 1 Score: 50.1 bits (118), Expect = 8.780e-5
Identity = 37/102 (36.27%), Postives = 53/102 (51.96%), Query Frame = 0
Query:    5 ICDNGATKHMAHNSDFLLNYQECYGHVRLADGNRLPIEGVGMLFLQFRFDSKVVLMKLTQVAFTPLLSHHLLSLGKF-ADFGHEYRCSREGLRIHLKTGRVL 105
            I D+GA+ HM  +   + N +  +GHV +A+G+R+PI GVG L L F  DSK + M      FT  L  +   +  F +D G EY  +    R HL    +L
Sbjct:  401 IIDSGASHHMISDDSLIKNIELAHGHVMIANGDRIPIRGVGDLKL-FNKDSKALYMP----EFTSNLLSYNAKIKIFRSDNGGEY--TGHDFRNHLAQHGIL 495          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53054.12707.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
UPI000BBEF31C3.890e-636.63uncharacterized protein LOC111199942 n=1 Tax=Brass... [more]
UPI000BBE966B3.960e-636.63uncharacterized protein LOC106448712 n=1 Tax=Brass... [more]
UPI000BBECC903.970e-636.63uncharacterized protein LOC106373021 n=1 Tax=Brass... [more]
Q9FWZ5_ARATH2.600e-540.54Putative retroelement polyprotein n=1 Tax=Arabidop... [more]
A0A178U605_ARATH2.620e-540.54ULP_PROTEASE domain-containing protein n=1 Tax=Ara... [more]
UPI0006AB2FB34.580e-537.97uncharacterized protein LOC106407804 n=1 Tax=Brass... [more]
UPI000BBEE5806.520e-538.16uncharacterized protein LOC106448715 n=1 Tax=Brass... [more]
UPI0006AAA9968.780e-536.27uncharacterized protein LOC106379087 n=1 Tax=Brass... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53054contigH-paniculata_contig53054:467..781 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53054.12707.1mRNA_H-paniculata_contig53054.12707.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig53054 467..784 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig53054.12707.1 ID=prot_H-paniculata_contig53054.12707.1|Name=mRNA_H-paniculata_contig53054.12707.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
MEIWICDNGATKHMAHNSDFLLNYQECYGHVRLADGNRLPIEGVGMLFLQ
FRFDSKVVLMKLTQVAFTPLLSHHLLSLGKFADFGHEYRCSREGLRIHLK
TGRVL
back to top