mRNA_H-paniculata_contig53012.12701.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig53012.12701.1
Unique NamemRNA_H-paniculata_contig53012.12701.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig53012.12701.1 vs. uniprot
Match: A0A6G0W7J2_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W7J2_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.810e-18
Identity = 46/121 (38.02%), Postives = 73/121 (60.33%), Query Frame = 1
Query:  130 EPKNHQKAQASPEWEHWPRAEEVEVQGLIDNGVWTQVERPKNKLVVSTIMTYKRKIGEDGEVEKYKSRLVAHGNRQIKTIH*QEASSPAPAAVTTRIVLSLAAIQDWELRHVDFEQAYLQA 492
            EP+N ++A + P+ +HW  + + E+ GL+ NG W  VERP +  VVS    YK K   +G+++K+K+RLVA G  Q   +   +  +P     + R++ +LAA     +RH+DF QAYL+A
Sbjct: 1081 EPRNAKEALSGPQAKHWQESMQAELDGLVANGTWEVVERPPSGNVVSHKWVYKIKYDREGQIDKFKARLVARGFTQRYGVEFSKTFAPVIKQASVRVIFALAATLKRTVRHLDFPQAYLKA 1201          
BLAST of mRNA_H-paniculata_contig53012.12701.1 vs. uniprot
Match: A0A4S4LPF2_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4S4LPF2_9AGAM)

HSP 1 Score: 87.4 bits (215), Expect = 5.760e-17
Identity = 54/156 (34.62%), Postives = 84/156 (53.85%), Query Frame = 1
Query:   34 DDEEFMAYDEVDIMAMQVALAILEELRGDLPMEPKNHQKAQASPEWEHWPRAEEVEVQGLIDN-GVWTQVERPKNKLVVSTIMTYKRKIGEDGEVEKYKSRLVAHGNRQIKTIH*QEASSPAPAAVTTRIVLSLAAIQDWELRHVDFEQAYLQAPI 498
            +DE    +D+V    ++ ALA     R     EP+N  +A+   +W HW  A + E+ G+I+  G W  V+RP +  VV +   +K K G DGE+ KYK+RLVA G  Q+  I   +  +P     + R +L++AA  DWE+  +D + AYL   +
Sbjct:  319 EDEGTTFWDDVRAQDVEHALAT----RVTDSHEPRNVTEARRGSDWSHWEAAMKTEL-GMIEKLGTWELVDRPSDANVVGSKWVFKIKRGADGEIIKYKARLVAQGFTQVPGIDYSDTFAPVAKLESIRALLAIAARNDWEIHQMDVKNAYLNGDL 469          
BLAST of mRNA_H-paniculata_contig53012.12701.1 vs. uniprot
Match: A0A540NMU0_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NMU0_MALBA)

HSP 1 Score: 81.3 bits (199), Expect = 2.980e-16
Identity = 42/108 (38.89%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  175 HWPRAEEVEVQGLIDNGVWTQVERPKNKLVVSTIMTYKRKIGEDGEVEKYKSRLVAHGNRQIKTIH*QEASSPAPAAVTTRIVLSLAAIQDWELRHVDFEQAYLQAPI 498
            HW  A + E + L   G W  V  P+N+ V+ +   YK K  +DG+V +YK+RLVA G  Q   +   E  SP     T R+VLSLAA+  W+LR +D + A+L   +
Sbjct:   64 HWRNAMQEEFEALQKQGTWELVPVPQNRNVIGSKWVYKLKKDQDGKVSRYKARLVAQGFSQEHGLEYDETFSPVVRHTTVRLVLSLAAMNKWDLRQLDVKNAFLHGEL 171          
BLAST of mRNA_H-paniculata_contig53012.12701.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY)

HSP 1 Score: 84.7 bits (208), Expect = 5.270e-16
Identity = 44/123 (35.77%), Postives = 69/123 (56.10%), Query Frame = 1
Query:  130 EPKNHQKAQASPEWEHWPRAEEVEVQGLIDNGVWTQVERPKNKLVVSTIMTYKRKIGEDGEVEKYKSRLVAHGNRQIKTIH*QEASSPAPAAVTTRIVLSLAAIQDWELRHVDFEQAYLQAPI 498
            EP++  +AQASPEW  W +A + E   L   G W   + PK++  V     ++RK  ++G+V KYK+RLVA G  QI  +   E  +P     + R +L+LA + +WE+  +D + AYL   +
Sbjct:  906 EPRSLAEAQASPEWPEWEKAVKAEYDQLQGMGTWELQDLPKDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDL 1028          
BLAST of mRNA_H-paniculata_contig53012.12701.1 vs. uniprot
Match: A0A146H565_MYCCL (Polyprotein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H565_MYCCL)

HSP 1 Score: 84.7 bits (208), Expect = 5.310e-16
Identity = 43/118 (36.44%), Postives = 63/118 (53.39%), Query Frame = 1
Query:  145 QKAQASPEWEHWPRAEEVEVQGLIDNGVWTQVERPKNKLVVSTIMTYKRKIGEDGEVEKYKSRLVAHGNRQIKTIH*QEASSPAPAAVTTRIVLSLAAIQDWELRHVDFEQAYLQAPI 498
            ++A+  P+W HW  A   E+  L   G WT V RP  + VV      + K    GE+EKYK+RLVA G  Q++ +   E  +P     + R+VL++AA  DW++   DF  AYL   +
Sbjct: 1066 EEARRRPDWPHWQAAINTELDSLKSAGTWTVVPRPSGRNVVDCKWVLRIKKNAAGEIEKYKARLVARGFTQVQGVDYYETFAPTAKIASIRLVLAIAARNDWDIDMFDFNSAYLNGEL 1183          
BLAST of mRNA_H-paniculata_contig53012.12701.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A)

HSP 1 Score: 79.7 bits (195), Expect = 7.190e-16
Identity = 41/114 (35.96%), Postives = 67/114 (58.77%), Query Frame = 1
Query:  130 EPKNHQKAQASPEWEHWPRAEEVEVQGLIDNGVWTQVERPKNKLVVSTIMTYKRKIGEDGEVEKYKSRLVAHGNRQIKTIH*QEASSPAPAAVTTRIVLSLAAIQDWELRHVDF 471
            +P+  ++A  SP+ E W  A E E++ L  N  W  V RP+ + VV     +KRK+ +DG+VE+YK+RLVA G  Q++ I  +E  SP     + R +L+ +  QDW++  + +
Sbjct:   30 DPETLEEALTSPDAEKWKLAMEEELENLKRNETWDIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKETFSPVIKTKSIRTLLAFSVEQDWQVHQLGY 143          
BLAST of mRNA_H-paniculata_contig53012.12701.1 vs. uniprot
Match: A0A8I6XHP4_HORVV (Uncharacterized protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6XHP4_HORVV)

HSP 1 Score: 84.0 bits (206), Expect = 9.330e-16
Identity = 46/123 (37.40%), Postives = 67/123 (54.47%), Query Frame = 1
Query:  130 EPKNHQKAQASPEWEHWPRAEEVEVQGLIDNGVWTQVERPKNKLVVSTIMTYKRKIGEDGEVEKYKSRLVAHGNRQIKTIH*QEASSPAPAAVTTRIVLSLAAIQDWELRHVDFEQAYLQAPI 498
            EP N  +A  SP W H   A + E++ +  NG WT V RP N+  V     YK K    G + KYK+RLVA G  Q + +   E  +P     T R++L+LAA +DW++ H+D + A+L   +
Sbjct:  669 EPANFVEASKSPSWTH---AMDEEMKAIESNGTWTLVTRPPNQKTVGLKWVYKLKKDTKGAIVKYKARLVAKGYVQRQGVDYDEVFAPVARIETVRVLLALAAQEDWKVHHMDVKSAFLNGDL 788          
BLAST of mRNA_H-paniculata_contig53012.12701.1 vs. uniprot
Match: A0A151S309_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151S309_CAJCA)

HSP 1 Score: 83.6 bits (205), Expect = 1.250e-15
Identity = 42/109 (38.53%), Postives = 60/109 (55.05%), Query Frame = 1
Query:  172 EHWPRAEEVEVQGLIDNGVWTQVERPKNKLVVSTIMTYKRKIGEDGEVEKYKSRLVAHGNRQIKTIH*QEASSPAPAAVTTRIVLSLAAIQDWELRHVDFEQAYLQAPI 498
            E W RA E E+  L +NG WT V  P   + +     YK K   DG +E+YK+RLVA G  QI+ +   +  SP     T R+VL+LAA+Q+W +  +D   A+L   +
Sbjct:  273 ECWKRAMEAEISALENNGTWTLVHLPPGIISIGNKWVYKIKTRSDGTIERYKARLVAKGYTQIEGLDYLDTFSPVAKLTTIRVVLALAAMQNWHIHQLDVNNAFLHGDL 381          
BLAST of mRNA_H-paniculata_contig53012.12701.1 vs. uniprot
Match: UPI000CED7874 (uncharacterized protein LOC112098012 n=1 Tax=Citrus clementina TaxID=85681 RepID=UPI000CED7874)

HSP 1 Score: 79.0 bits (193), Expect = 1.330e-15
Identity = 42/107 (39.25%), Postives = 57/107 (53.27%), Query Frame = 1
Query:  178 WPRAEEVEVQGLIDNGVWTQVERPKNKLVVSTIMTYKRKIGEDGEVEKYKSRLVAHGNRQIKTIH*QEASSPAPAAVTTRIVLSLAAIQDWELRHVDFEQAYLQAPI 498
            W    + E   LI NG W+ V R  +K VV     Y+ K   DG V KYK+RLVA G +QI  ++  E  SP     T R++LSLA +  W++R VD   A+L   +
Sbjct:   36 WFTTMKKEYAALIQNGTWSLVPRIADKRVVGNKWVYRAKYNTDGSVAKYKARLVAKGFQQIMGVNCFETFSPVIKPATVRVILSLAVMNQWKIRQVDVNNAFLNGEL 142          
BLAST of mRNA_H-paniculata_contig53012.12701.1 vs. uniprot
Match: J6ERE3_TRIAS (Gag-Pol n=1 Tax=Trichosporon asahii var. asahii (strain ATCC 90039 / CBS 2479 / JCM 2466 / KCTC 7840 / NBRC 103889/ NCYC 2677 / UAMH 7654) TaxID=1186058 RepID=J6ERE3_TRIAS)

HSP 1 Score: 83.6 bits (205), Expect = 1.330e-15
Identity = 46/123 (37.40%), Postives = 68/123 (55.28%), Query Frame = 1
Query:  130 EPKNHQKAQASPEWEHWPRAEEVEVQGLIDNGVWTQVERPKNKLVVSTIMTYKRKIGEDGEVEKYKSRLVAHGNRQIKTIH*QEASSPAPAAVTTRIVLSLAAIQDWELRHVDFEQAYLQAPI 498
            +PK   +A A P+ E W  A + E+  L+  G W++ + PK+K  V+    +KRK   DG V KYK+RLV  G  QI  +  +E  +P   + +  ++LS+AA  + ELR  D E AYL   I
Sbjct:  890 DPKTVAEALALPDAEQWIEAMKKEIDNLVGKGTWSEAKLPKHKKAVTAKWVFKRKRDADGNVVKYKARLVGRGFSQIPGVDFEETYAPVGRSTSLLLILSIAARYNLELRQADVEGAYLNGTI 1012          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53012.12701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0W7J2_9STRA3.810e-1838.02Integrase catalytic domain-containing protein n=1 ... [more]
A0A4S4LPF2_9AGAM5.760e-1734.62Integrase catalytic domain-containing protein n=1 ... [more]
A0A540NMU0_MALBA2.980e-1638.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GYH9_9APHY5.270e-1635.77Uncharacterized protein n=6 Tax=Sparassis crispa T... [more]
A0A146H565_MYCCL5.310e-1636.44Polyprotein n=1 Tax=Mycena chlorophos TaxID=658473... [more]
UPI0015A81C6A7.190e-1635.96uncharacterized mitochondrial protein AtMg00820-li... [more]
A0A8I6XHP4_HORVV9.330e-1637.40Uncharacterized protein n=1 Tax=Hordeum vulgare su... [more]
A0A151S309_CAJCA1.250e-1538.53Retrovirus-related Pol polyprotein from transposon... [more]
UPI000CED78741.330e-1539.25uncharacterized protein LOC112098012 n=1 Tax=Citru... [more]
J6ERE3_TRIAS1.330e-1537.40Gag-Pol n=1 Tax=Trichosporon asahii var. asahii (s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53012contigH-paniculata_contig53012:22..519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score70.1
Seed ortholog evalue7.3e-10
Seed eggNOG ortholog176275.XP_008602273.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs21AV1@147550,38DPC@33154,3NUZ7@4751,3QNZW@4890,3TMCJ@5125,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelHypocreales
Best eggNOG OGNA|NA|NA
Exons1
Model size498
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53012.12701.1prot_H-paniculata_contig53012.12701.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig53012 145..471 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930536.5299218-UTR-H-paniculata_contig53012:21..1441622930536.5299218-UTR-H-paniculata_contig53012:21..144Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig53012 22..144 -
1691481337.9569662-UTR-H-paniculata_contig53012:21..1441691481337.9569662-UTR-H-paniculata_contig53012:21..144Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig53012 22..144 -
1622930536.563203-UTR-H-paniculata_contig53012:471..5191622930536.563203-UTR-H-paniculata_contig53012:471..519Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig53012 472..519 -
1691481337.9793155-UTR-H-paniculata_contig53012:471..5191691481337.9793155-UTR-H-paniculata_contig53012:471..519Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig53012 472..519 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930536.543701-CDS-H-paniculata_contig53012:144..4711622930536.543701-CDS-H-paniculata_contig53012:144..471Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53012 145..471 -
1691481337.9695265-CDS-H-paniculata_contig53012:144..4711691481337.9695265-CDS-H-paniculata_contig53012:144..471Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53012 145..471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig53012.12701.1

>prot_H-paniculata_contig53012.12701.1 ID=prot_H-paniculata_contig53012.12701.1|Name=mRNA_H-paniculata_contig53012.12701.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MAYDEVDIMAMQVALAILEELRGDLPMEPKNHQKAQASPEWEHWPRAEEV
EVQGLIDNGVWTQVERPKNKLVVSTIMTYKRKIGEDGEVEKYKSRLVAHG
NRQIKTIH*
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mRNA from alignment at H-paniculata_contig53012:22..519-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig53012.12701.1 ID=mRNA_H-paniculata_contig53012.12701.1|Name=mRNA_H-paniculata_contig53012.12701.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=498bp|location=Sequence derived from alignment at H-paniculata_contig53012:22..519- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTACAAAGCGTCATCACGGGCGAGATTGGCCTCGACGACGAGGAATTCAT GGCTTATGATGAAGTCGATATCATGGCGATGCAGGTCGCACTAGCGATTC TCGAAGAACTGAGGGGCGACCTCCCCATGGAGCCTAAGAATCACCAGAAG GCGCAGGCGTCGCCGGAGTGGGAACACTGGCCAAGAGCGGAGGAAGTCGA GGTTCAAGGTCTAATCGACAACGGGGTTTGGACGCAAGTGGAGCGCCCGA AGAACAAACTGGTCGTGAGCACGATCATGACCTACAAAAGGAAAATCGGC GAGGACGGAGAAGTAGAGAAATACAAGAGCCGCCTGGTCGCCCACGGAAA CCGTCAGATTAAGACCATCCACTAGCAGGAAGCTTCGTCTCCTGCACCCG CAGCGGTCACCACAAGAATAGTGTTGTCGCTTGCGGCAATCCAGGACTGG GAGCTACGGCACGTCGACTTTGAACAAGCGTACTTGCAGGCGCCCATC
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Coding sequence (CDS) from alignment at H-paniculata_contig53012:22..519-

>mRNA_H-paniculata_contig53012.12701.1 ID=mRNA_H-paniculata_contig53012.12701.1|Name=mRNA_H-paniculata_contig53012.12701.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig53012:22..519- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTTATGATGAAGTCGATATCATGGCGATGCAGGTCGCACTAGCGAT
TCTCGAAGAACTGAGGGGCGACCTCCCCATGGAGCCTAAGAATCACCAGA
AGGCGCAGGCGTCGCCGGAGTGGGAACACTGGCCAAGAGCGGAGGAAGTC
GAGGTTCAAGGTCTAATCGACAACGGGGTTTGGACGCAAGTGGAGCGCCC
GAAGAACAAACTGGTCGTGAGCACGATCATGACCTACAAAAGGAAAATCG
GCGAGGACGGAGAAGTAGAGAAATACAAGAGCCGCCTGGTCGCCCACGGA
AACCGTCAGATTAAGACCATCCACTAGATGGCTTATGATGAAGTCGATAT
CATGGCGATGCAGGTCGCACTAGCGATTCTCGAAGAACTGAGGGGCGACC
TCCCCATGGAGCCTAAGAATCACCAGAAGGCGCAGGCGTCGCCGGAGTGG
GAACACTGGCCAAGAGCGGAGGAAGTCGAGGTTCAAGGTCTAATCGACAA
CGGGGTTTGGACGCAAGTGGAGCGCCCGAAGAACAAACTGGTCGTGAGCA
CGATCATGACCTACAAAAGGAAAATCGGCGAGGACGGAGAAGTAGAGAAA
TACAAGAGCCGCCTGGTCGCCCACGGAAACCGTCAGATTAAGACCATCCA
CTAG
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