mRNA_H-paniculata_contig52986.12687.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig52986.12687.1
Unique NamemRNA_H-paniculata_contig52986.12687.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig52986.12687.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.780e-17
Identity = 39/94 (41.49%), Postives = 54/94 (57.45%), Query Frame = 1 
Query:  112 CRAGDAFTVTSTSSTPCKSVLIGDGFCDPINNNPSCDYDNGDCCECDCISTLN---KCGINGYLCANPSSGCADPILEYVNCTGDLVDAGNGNC 384
            C   D    ++T    C+    GD +CD INNNPSCDYD GDCCEC C S+ +    CG NG+ C + +      + E+ +CTGD +  G+G+C
Sbjct:   44 CLYSDCDPASTTEVATCEESWKGDSWCDEINNNPSCDYDGGDCCECSCASSSSAEYSCGENGFNCRDTTCLDLSLVAEFPDCTGDYLTVGDGSC 137
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BLAST of mRNA_H-paniculata_contig52986.12687.1 vs. uniprot
Match: A0A6H5JVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVP4_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.440e-13
Identity = 30/65 (46.15%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:  130 FTVTSTSSTPCKSVLIGDGFCDPINNNPSCDYDNGDCCECDCISTLNKCGINGYLCANPSSGCAD 324
            + V +  ST C S   GDG+CD   N+  C++D GDCCECDC+     CG+ GY C +P+S C+D
Sbjct:  400 YDVYNYGSTACISSYTGDGWCDSFYNHADCEWDGGDCCECDCVDATYDCGVVGYDCLDPTSSCSD 464
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BLAST of mRNA_H-paniculata_contig52986.12687.1 vs. uniprot
Match: D7FSN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSN8_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 2.450e-10
Identity = 26/50 (52.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:  163 KSVLIGDGFCDPINNNPSCDYDNGDCCECDCISTLNKCGINGYLCANPSS 312
             S  I DG+CD   N   CD+D GDCCECDC+  L  CG+  Y C NPS+
Sbjct:   62 SSSYISDGWCDSYYNTEECDWDGGDCCECDCVDALYTCGVADYDCLNPSA 111
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BLAST of mRNA_H-paniculata_contig52986.12687.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 3.390e-10
Identity = 34/79 (43.04%), Postives = 43/79 (54.43%), Query Frame = 1 
Query:  160 CKSVLIGDGFCDPINNNPSCDYDNGDCCECDCISTLNK-CGINGYLCANPSSG-CADPILEYVNCTGDLVDAGNGNCDS 390
            C      DGFCD +NN+PSCDYD GDCCEC CI   +  CG  G+ C +P  G   +   E   C    ++  +G CDS
Sbjct:   87 CHEDWAKDGFCDLVNNHPSCDYDGGDCCECSCIDGPDYGCGSIGFACLDPDCGNTTETAPENTTCEESWMN--DGYCDS 163
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BLAST of mRNA_H-paniculata_contig52986.12687.1 vs. uniprot
Match: A0A6H5JX54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX54_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 2.220e-9
Identity = 30/47 (63.83%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:  175 IGDGFCDPINNNPSCDYDNGDCCECDCISTLNK-CGINGYLCANPSS 312
            IG+G C   NN   C YD GDCCECDC STL   CG+NGY CA+PSS
Sbjct:  223 IGNGACYWGNNFEECGYDGGDCCECDCESTLESHCGVNGYDCADPSS 269
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BLAST of mRNA_H-paniculata_contig52986.12687.1 vs. uniprot
Match: A0A2E8S136_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E8S136_9DELT)

HSP 1 Score: 63.5 bits (153), Expect = 3.920e-9
Identity = 28/69 (40.58%), Postives = 37/69 (53.62%), Query Frame = 1 
Query:  169 VLIGDGFCDPINNNPSCDYDNGDCCECDCISTLNKCGINGYLCANPSS---------------GCADPI 330
            + +GDG+CD  NNN +C +D GDCCE  C+S    CG N Y C +P+S               GC DP+
Sbjct:  273 MWVGDGWCDDSNNNATCSWDGGDCCESACVSASYTCGANNYDCLDPNSCENTEAGCGCLLDNGGCGDPM 341
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BLAST of mRNA_H-paniculata_contig52986.12687.1 vs. uniprot
Match: D7FX77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX77_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.330e-8
Identity = 26/50 (52.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:  175 IGDGFCDPINNNPSCDYDNGDCCECDCIS--TLNKCGINGYLCANPSSGC 318
            + DG CD  NNN +CDYD GDCCECDC     + +CG+ GY C + +S C
Sbjct:  369 VSDGKCDSGNNNAACDYDGGDCCECDCYDYGEVYECGVVGYYCLDQTSLC 418
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BLAST of mRNA_H-paniculata_contig52986.12687.1 vs. uniprot
Match: A0A6H5J6K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6K0_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 6.260e-8
Identity = 29/64 (45.31%), Postives = 37/64 (57.81%), Query Frame = 1 
Query:  139 TSTSSTPCKSVL--IGDGFCDPINNNPSCDYDNGDCCECDCIS--TLNKCGINGYLCANPSSGC 318
            TS+  + C   +  + DG CD  NNN +CDYD GDCCECDC       +CG  GY C + +S C
Sbjct:  350 TSSDDSGCFDGVWAVSDGKCDSGNNNAACDYDGGDCCECDCYDYGEAYECGAFGYYCLDQTSIC 413
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig52986.12687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5K7Z1_9PHAE1.780e-1741.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVP4_9PHAE2.440e-1346.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSN8_ECTSI2.450e-1052.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5Y7_ECTSI3.390e-1043.04Polymorphic Outer membrane protein G/I family n=1 ... [more]
A0A6H5JX54_9PHAE2.220e-963.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2E8S136_9DELT3.920e-940.58Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
D7FX77_ECTSI1.330e-852.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J6K0_9PHAE6.260e-845.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig52986contigH-paniculata_contig52986:809..1198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue1.5e-14
Seed eggNOG ortholog2880.D7G5Y7
Hectar predicted targeting categorysignal peptide
EggNOG OGs2BFIX@1,2S176@2759
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-25_000960.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size392
Cds size390
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930534.2073143-CDS-H-paniculata_contig52986:808..11981622930534.2073143-CDS-H-paniculata_contig52986:808..1198Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52986 809..1198 +
1691481336.822706-CDS-H-paniculata_contig52986:808..11981691481336.822706-CDS-H-paniculata_contig52986:808..1198Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52986 809..1198 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig52986.12687.1prot_H-paniculata_contig52986.12687.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig52986 809..1198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig52986.12687.1

>prot_H-paniculata_contig52986.12687.1 ID=prot_H-paniculata_contig52986.12687.1|Name=mRNA_H-paniculata_contig52986.12687.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=130bp
MSSILQETRTSRIVAPFGQGTGMAGCGFVYIFLLFSFCRAGDAFTVTSTS
STPCKSVLIGDGFCDPINNNPSCDYDNGDCCECDCISTLNKCGINGYLCA
NPSSGCADPILEYVNCTGDLVDAGNGNCDS
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mRNA from alignment at H-paniculata_contig52986:809..1198+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig52986.12687.1 ID=mRNA_H-paniculata_contig52986.12687.1|Name=mRNA_H-paniculata_contig52986.12687.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=390bp|location=Sequence derived from alignment at H-paniculata_contig52986:809..1198+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTTCCATTTTGCAGGAAACACGTACTTCGAGAATCGTAGCACCGTT
CGGACAAGGCACAGGTATGGCTGGGTGCGGCTTCGTCTACATTTTCCTTC
TCTTCTCGTTTTGCCGCGCTGGCGATGCTTTCACGGTAACTAGTACCAGT
TCGACTCCCTGCAAGTCCGTGCTCATTGGAGACGGCTTTTGCGATCCTAT
CAACAACAACCCGTCTTGTGACTACGACAATGGCGACTGCTGCGAGTGCG
ACTGCATCTCCACCCTCAATAAATGTGGCATCAACGGCTACTTGTGTGCG
AACCCGAGTTCAGGTTGTGCAGATCCAATCTTGGAGTATGTCAACTGCAC
CGGGGATTTGGTCGACGCCGGCAACGGGAACTGCGATTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig52986:809..1198+

>mRNA_H-paniculata_contig52986.12687.1 ID=mRNA_H-paniculata_contig52986.12687.1|Name=mRNA_H-paniculata_contig52986.12687.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at H-paniculata_contig52986:809..1198+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTTCCATTTTGCAGGAAACACGTACTTCGAGAATCGTAGCACCGTT
CGGACAAGGCACAGGTATGGCTGGGTGCGGCTTCGTCTACATTTTCCTTC
TCTTCTCGTTTTGCCGCGCTGGCGATGCTTTCACGGTAACTAGTACCAGT
TCGACTCCCTGCAAGTCCGTGCTCATTGGAGACGGCTTTTGCGATCCTAT
CAACAACAACCCGTCTTGTGACTACGACAATGGCGACTGCTGCGAGTGCG
ACTGCATCTCCACCCTCAATAAATGTGGCATCAACGGCTACTTGTGTGCG
AACCCGAGTTCAGGTTGTGCAGATCCAATCTTGGAGTATGTCAACTGCAC
CGGGGATTTGGTCGACGCCGGCAACGGGAACTGCGATTCCATGTCTTCCA
TTTTGCAGGAAACACGTACTTCGAGAATCGTAGCACCGTTCGGACAAGGC
ACAGGTATGGCTGGGTGCGGCTTCGTCTACATTTTCCTTCTCTTCTCGTT
TTGCCGCGCTGGCGATGCTTTCACGGTAACTAGTACCAGTTCGACTCCCT
GCAAGTCCGTGCTCATTGGAGACGGCTTTTGCGATCCTATCAACAACAAC
CCGTCTTGTGACTACGACAATGGCGACTGCTGCGAGTGCGACTGCATCTC
CACCCTCAATAAATGTGGCATCAACGGCTACTTGTGTGCGAACCCGAGTT
CAGGTTGTGCAGATCCAATCTTGGAGTATGTCAACTGCACCGGGGATTTG
GTCGACGCCGGCAACGGGAACTGCGATTCC
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