mRNA_H-paniculata_contig529.12673.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig529.12673.1
Unique NamemRNA_H-paniculata_contig529.12673.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig529.12673.1 vs. uniprot
Match: D7G8H6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8H6_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 8.780e-21
Identity = 44/58 (75.86%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:    1 ELPPIWVPIVVVGVLSVGIGLLQRSLGDVIDDEAKLGSISGARAAKQSARDRNMFKKK 174
            +LPP+WVP+ V  VL++GIGLLQ SLGDV++DEAKLG++SGARAAKQSARDR+MFKKK
Sbjct:  110 DLPPMWVPLAVGFVLTLGIGLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKK 167
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BLAST of mRNA_H-paniculata_contig529.12673.1 vs. uniprot
Match: A0A836CD09_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD09_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.800e-18
Identity = 40/58 (68.97%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    1 ELPPIWVPIVVVGVLSVGIGLLQRSLGDVIDDEAKLGSISGARAAKQSARDRNMFKKK 174
            ELPP+WVP+V+  V+  GIG  Q SLG+V+DDEAKLG +SGARAAKQSAR R+MFK+K
Sbjct:   49 ELPPMWVPLVLGAVVLAGIGAQQLSLGNVMDDEAKLGGLSGARAAKQSARGRSMFKRK 106
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BLAST of mRNA_H-paniculata_contig529.12673.1 vs. uniprot
Match: A0A7S3PV07_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PV07_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 6.910e-11
Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    1 ELPPIWVPIVVVGVLSVGIGLLQRSLGDVIDDEAKLGSISGARAAKQSARDRNMFKKK 174
            ELPP+WVPI+   V+  G+GLL  SLGDV+++EA LG +SGA+A K+  R R+ + KK
Sbjct:   79 ELPPVWVPILFAIVIIGGVGLLTFSLGDVMNEEASLGLMSGAKAKKEKERSRSSYFKK 136
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BLAST of mRNA_H-paniculata_contig529.12673.1 vs. uniprot
Match: A0A6U1Q394_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1Q394_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 7.990e-11
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    4 LPPIWVPIVVVGVLSVGIGLLQRSLGDVIDDEAKLGSISGARAAKQSARDRNMF 165
            LPP WVP+ V   L  G+GLLQ SLG+V DDEA LGS SGARA K+S R++   
Sbjct:   89 LPPFWVPVGVAIALLGGVGLLQLSLGNVADDEAMLGSASGARARKESTRNKKFL 142
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BLAST of mRNA_H-paniculata_contig529.12673.1 vs. uniprot
Match: A0A7S3Y243_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y243_HETAK)

HSP 1 Score: 63.9 bits (154), Expect = 1.920e-10
Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 ELPPIWVPIVVVGVLSVGIGLLQRSLGDVIDDEAKLGSISGARAAKQSARDRNMF 165
            ELPP+WVP+    VL VGIG+LQ SLGDV++ EA LGS SGARA K++ R +   
Sbjct:  463 ELPPMWVPLATGAVLFVGIGVLQASLGDVMEAEAGLGSASGARARKENTRRKKFL 517
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BLAST of mRNA_H-paniculata_contig529.12673.1 vs. uniprot
Match: M2VSI4_GALSU (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VSI4_GALSU)

HSP 1 Score: 49.7 bits (117), Expect = 2.110e-6
Identity = 23/50 (46.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:   16 WVPIVVVGVLSVGIGLLQRSLGDVIDDEAKLGSISGARAAKQSARDRNMF 165
            W+ +   G + +G+GLLQRSLGDVI DEA+L S S AR  +++ R +   
Sbjct:   23 WILVGATGAILIGVGLLQRSLGDVIRDEAQLPSASSARTKREANRSKRFL 72
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig529.12673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G8H6_ECTSI8.780e-2175.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CD09_9STRA3.800e-1868.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3PV07_9STRA6.910e-1153.45Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A6U1Q394_9STRA7.990e-1159.26Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3Y243_HETAK1.920e-1058.18Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
M2VSI4_GALSU2.110e-646.00Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig529contigH-paniculata_contig529:5242..5418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_003060.1
Exons1
Model size177
Cds size177
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930532.4664624-CDS-H-paniculata_contig529:5241..54181622930532.4664624-CDS-H-paniculata_contig529:5241..5418Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig529 5242..5418 -
1691481335.00675-CDS-H-paniculata_contig529:5241..54181691481335.00675-CDS-H-paniculata_contig529:5241..5418Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig529 5242..5418 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig529.12673.1prot_H-paniculata_contig529.12673.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig529 5242..5418 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig529.12673.1

>prot_H-paniculata_contig529.12673.1 ID=prot_H-paniculata_contig529.12673.1|Name=mRNA_H-paniculata_contig529.12673.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
ELPPIWVPIVVVGVLSVGIGLLQRSLGDVIDDEAKLGSISGARAAKQSAR
DRNMFKKK*
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mRNA from alignment at H-paniculata_contig529:5242..5418-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig529.12673.1 ID=mRNA_H-paniculata_contig529.12673.1|Name=mRNA_H-paniculata_contig529.12673.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at H-paniculata_contig529:5242..5418- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGTTGCCACCAATCTGGGTCCCGATCGTCGTGGTCGGAGTATTATCCGT
CGGCATCGGCCTACTGCAGCGGAGCTTGGGCGACGTTATCGATGATGAGG
CTAAGCTCGGATCTATATCAGGAGCGAGGGCTGCAAAGCAGAGCGCACGC
GACCGCAATATGTTTAAAAAGAAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig529:5242..5418-

>mRNA_H-paniculata_contig529.12673.1 ID=mRNA_H-paniculata_contig529.12673.1|Name=mRNA_H-paniculata_contig529.12673.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig529:5242..5418- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGTTGCCACCAATCTGGGTCCCGATCGTCGTGGTCGGAGTATTATCCGT
CGGCATCGGCCTACTGCAGCGGAGCTTGGGCGACGTTATCGATGATGAGG
CTAAGCTCGGATCTATATCAGGAGCGAGGGCTGCAAAGCAGAGCGCACGC
GACCGCAATATGTTTAAAAAGAAGTGAGAGTTGCCACCAATCTGGGTCCC
GATCGTCGTGGTCGGAGTATTATCCGTCGGCATCGGCCTACTGCAGCGGA
GCTTGGGCGACGTTATCGATGATGAGGCTAAGCTCGGATCTATATCAGGA
GCGAGGGCTGCAAAGCAGAGCGCACGCGACCGCAATATGTTTAAAAAGAA
GTGA
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