mRNA_H-paniculata_contig52714.12651.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig52714.12651.1
Unique NamemRNA_H-paniculata_contig52714.12651.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig52714.12651.1 vs. uniprot
Match: A0A6H5L470_9PHAE (Importin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L470_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.650e-12
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    7 EPPEKEFMVCALDLLSGMSEGLGQGFETLLASSNLLPLLLQ 129
            EPPEKEFMVCALDLLSGMSEGLG  F +LLASSNLL LLLQ
Sbjct:  637 EPPEKEFMVCALDLLSGMSEGLGGSFGSLLASSNLLQLLLQ 677
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BLAST of mRNA_H-paniculata_contig52714.12651.1 vs. uniprot
Match: H2ZM70_CIOSA (Importin N-terminal domain-containing protein n=6 Tax=Ciona TaxID=7718 RepID=H2ZM70_CIOSA)

HSP 1 Score: 58.9 bits (141), Expect = 5.560e-9
Identity = 26/41 (63.41%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 KMEPPEKEFMVCALDLLSGMSEGLGQGFETLLASSNLLPLL 123
            K +PP+K+FM+ ALDLLSG++EGLG G E L+ SSN+LPL+
Sbjct:  647 KFDPPDKDFMIVALDLLSGLAEGLGSGIEQLVQSSNILPLM 687
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BLAST of mRNA_H-paniculata_contig52714.12651.1 vs. uniprot
Match: H2ZM67_CIOSA (Importin N-terminal domain-containing protein n=2 Tax=Ciona savignyi TaxID=51511 RepID=H2ZM67_CIOSA)

HSP 1 Score: 58.9 bits (141), Expect = 5.560e-9
Identity = 26/41 (63.41%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 KMEPPEKEFMVCALDLLSGMSEGLGQGFETLLASSNLLPLL 123
            K +PP+K+FM+ ALDLLSG++EGLG G E L+ SSN+LPL+
Sbjct:  621 KFDPPDKDFMIVALDLLSGLAEGLGSGIEQLVQSSNILPLM 661
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BLAST of mRNA_H-paniculata_contig52714.12651.1 vs. uniprot
Match: A0A438K3Z1_VITVI (Transportin-1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438K3Z1_VITVI)

HSP 1 Score: 53.1 bits (126), Expect = 9.240e-8
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:   16 EKEFMVCALDLLSGMSEGLGQGFETLLASSNLLPLLLQ 129
            +KEF+VC+LDLLSG++EGLG G E+L A SNL  LLLQ
Sbjct:   33 DKEFIVCSLDLLSGLAEGLGSGIESLAAQSNLRDLLLQ 70
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BLAST of mRNA_H-paniculata_contig52714.12651.1 vs. uniprot
Match: A0A2G5ELS1_AQUCA (Importin N-terminal domain-containing protein n=6 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5ELS1_AQUCA)

HSP 1 Score: 55.1 bits (131), Expect = 1.270e-7
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   16 EKEFMVCALDLLSGMSEGLGQGFETLLASSNLLPLLLQ 129
            +KEF+VC+LDLLSG++EGLG G ETL+A SNL  LLLQ
Sbjct:  631 DKEFIVCSLDLLSGLAEGLGAGIETLVAQSNLRDLLLQ 668
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BLAST of mRNA_H-paniculata_contig52714.12651.1 vs. uniprot
Match: A0A6P5F4Z5_ANACO (LOW QUALITY PROTEIN: transportin-1-like n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5F4Z5_ANACO)

HSP 1 Score: 55.1 bits (131), Expect = 1.270e-7
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   16 EKEFMVCALDLLSGMSEGLGQGFETLLASSNLLPLLLQ 129
            EKEF+VC+LDLLSG++EGLG G E+L+A SNL  LLLQ
Sbjct:  630 EKEFIVCSLDLLSGLAEGLGSGIESLVAQSNLRDLLLQ 667
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BLAST of mRNA_H-paniculata_contig52714.12651.1 vs. uniprot
Match: A0A6V7Q6W7_ANACO (Uncharacterized protein n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7Q6W7_ANACO)

HSP 1 Score: 55.1 bits (131), Expect = 1.270e-7
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   16 EKEFMVCALDLLSGMSEGLGQGFETLLASSNLLPLLLQ 129
            EKEF+VC+LDLLSG++EGLG G E+L+A SNL  LLLQ
Sbjct:  576 EKEFIVCSLDLLSGLAEGLGSGIESLVAQSNLRDLLLQ 613
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BLAST of mRNA_H-paniculata_contig52714.12651.1 vs. uniprot
Match: A0A453DL83_AEGTS (Uncharacterized protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453DL83_AEGTS)

HSP 1 Score: 54.3 bits (129), Expect = 1.340e-7
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   16 EKEFMVCALDLLSGMSEGLGQGFETLLASSNLLPLLLQ 129
            +KEF+VCALDLLSG++EGLG G E+L+A SNL  LLLQ
Sbjct:   12 DKEFIVCALDLLSGLTEGLGGGIESLVAQSNLRDLLLQ 49
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BLAST of mRNA_H-paniculata_contig52714.12651.1 vs. uniprot
Match: A0A446LPN9_TRITD (Importin N-terminal domain-containing protein n=11 Tax=Triticinae TaxID=1648030 RepID=A0A446LPN9_TRITD)

HSP 1 Score: 54.3 bits (129), Expect = 2.380e-7
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   16 EKEFMVCALDLLSGMSEGLGQGFETLLASSNLLPLLLQ 129
            +KEF+VCALDLLSG++EGLG G E+L+A SNL  LLLQ
Sbjct:  634 DKEFIVCALDLLSGLTEGLGGGIESLVAQSNLRDLLLQ 671
[Close]
BLAST of mRNA_H-paniculata_contig52714.12651.1 vs. uniprot
Match: A0A6J5Y4Y0_PRUAR (Importin N-terminal domain-containing protein n=2 Tax=Prunus TaxID=3754 RepID=A0A6J5Y4Y0_PRUAR)

HSP 1 Score: 54.3 bits (129), Expect = 2.380e-7
Identity = 26/40 (65.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   10 PPEKEFMVCALDLLSGMSEGLGQGFETLLASSNLLPLLLQ 129
            P +KEF+VC+LDLLSG++EGLG G E+L++ SNL  LLLQ
Sbjct:  629 PYDKEFIVCSLDLLSGLAEGLGSGIESLVSQSNLRDLLLQ 668
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig52714.12651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L470_9PHAE1.650e-1287.80Importin N-terminal domain-containing protein n=2 ... [more]
H2ZM70_CIOSA5.560e-963.41Importin N-terminal domain-containing protein n=6 ... [more]
H2ZM67_CIOSA5.560e-963.41Importin N-terminal domain-containing protein n=2 ... [more]
A0A438K3Z1_VITVI9.240e-868.42Transportin-1 n=1 Tax=Vitis vinifera TaxID=29760 R... [more]
A0A2G5ELS1_AQUCA1.270e-771.05Importin N-terminal domain-containing protein n=6 ... [more]
A0A6P5F4Z5_ANACO1.270e-771.05LOW QUALITY PROTEIN: transportin-1-like n=2 Tax=An... [more]
A0A6V7Q6W7_ANACO1.270e-771.05Uncharacterized protein n=1 Tax=Ananas comosus var... [more]
A0A453DL83_AEGTS1.340e-771.05Uncharacterized protein n=2 Tax=Aegilops tauschii ... [more]
A0A446LPN9_TRITD2.380e-771.05Importin N-terminal domain-containing protein n=11... [more]
A0A6J5Y4Y0_PRUAR2.380e-765.00Importin N-terminal domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig52714contigH-paniculata_contig52714:496..624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue1.8e-09
Seed eggNOG ortholog2880.D8LLU7
Preferred nameTNPO1
KEGG koko:K10265,ko:K18727,ko:K18752
KEGG TC1.I.1
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000060,GO:0000166,GO:0000278,GO:0000280,GO:0001882,GO:0001883,GO:0002164,GO:0002376,GO:0002520,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0005929,GO:0005933,GO:0005934,GO:0005935,GO:0006606,GO:0006607,GO:0006610,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007049,GO:0007275,GO:0008104,GO:0008139,GO:0008150,GO:0008565,GO:0009791,GO:0009892,GO:0009894,GO:0009987,GO:0010458,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0010970,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016441,GO:0016458,GO:0017038,GO:0017076,GO:0019001,GO:0019219,GO:0019222,GO:0022402,GO:0022607,GO:0022613,GO:0022618,GO:0030030,GO:0030031,GO:0030097,GO:0030427,GO:0030705,GO:0031047,GO:0031090,GO:0031224,GO:0031323,GO:0031329,GO:0031503,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032386,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033157,GO:0033218,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0034622,GO:0035166,GO:0035167,GO:0035194,GO:0035195,GO:0035280,GO:0035639,GO:0035735,GO:0036094,GO:0040029,GO:0042073,GO:0042277,GO:0042306,GO:0042886,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043487,GO:0043488,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044782,GO:0045184,GO:0045595,GO:0045596,GO:0046822,GO:0046907,GO:0048285,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048542,GO:0048569,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051049,GO:0051093,GO:0051147,GO:0051148,GO:0051169,GO:0051170,GO:0051171,GO:0051179,GO:0051223,GO:0051233,GO:0051234,GO:0051252,GO:0051641,GO:0051649,GO:0060255,GO:0060271,GO:0060341,GO:0061013,GO:0061608,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070201,GO:0070727,GO:0070922,GO:0070925,GO:0071702,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072686,GO:0080090,GO:0090087,GO:0097159,GO:0097367,GO:0099111,GO:0120025,GO:0120031,GO:0120036,GO:0140014,GO:0140104,GO:0140142,GO:1900180,GO:1901265,GO:1901363,GO:1903047,GO:1903311,GO:1903827,GO:1904589,GO:1990023
EggNOG free text desc.ribosomal protein import into nucleus
EggNOG OGsKOG2023@1,KOG2023@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03019,ko04121
Exons1
Model size129
Cds size126
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930529.3858478-CDS-H-paniculata_contig52714:495..6211622930529.3858478-CDS-H-paniculata_contig52714:495..621Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52714 496..621 -
1691481333.8004498-CDS-H-paniculata_contig52714:495..6211691481333.8004498-CDS-H-paniculata_contig52714:495..621Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52714 496..621 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930529.4031057-UTR-H-paniculata_contig52714:621..6241622930529.4031057-UTR-H-paniculata_contig52714:621..624Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig52714 622..624 -
1691481333.8134718-UTR-H-paniculata_contig52714:621..6241691481333.8134718-UTR-H-paniculata_contig52714:621..624Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig52714 622..624 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig52714.12651.1prot_H-paniculata_contig52714.12651.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig52714 496..621 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig52714.12651.1

>prot_H-paniculata_contig52714.12651.1 ID=prot_H-paniculata_contig52714.12651.1|Name=mRNA_H-paniculata_contig52714.12651.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=42bp
MEPPEKEFMVCALDLLSGMSEGLGQGFETLLASSNLLPLLLQ
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mRNA from alignment at H-paniculata_contig52714:496..624-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig52714.12651.1 ID=mRNA_H-paniculata_contig52714.12651.1|Name=mRNA_H-paniculata_contig52714.12651.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=129bp|location=Sequence derived from alignment at H-paniculata_contig52714:496..624- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGATGGAGCCGCCGGAGAAGGAGTTTATGGTGTGTGCTCTGGATCTACT
GAGCGGCATGTCCGAGGGGTTGGGACAGGGCTTCGAAACTCTTTTGGCCT
CCAGTAATCTTCTGCCGTTGCTCCTACAG
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Coding sequence (CDS) from alignment at H-paniculata_contig52714:496..624-

>mRNA_H-paniculata_contig52714.12651.1 ID=mRNA_H-paniculata_contig52714.12651.1|Name=mRNA_H-paniculata_contig52714.12651.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=252bp|location=Sequence derived from alignment at H-paniculata_contig52714:496..624- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCCGCCGGAGAAGGAGTTTATGGTGTGTGCTCTGGATCTACTGAG
CGGCATGTCCGAGGGGTTGGGACAGGGCTTCGAAACTCTTTTGGCCTCCA
GTAATCTTCTGCCGTTGCTCCTACAGATGGAGCCGCCGGAGAAGGAGTTT
ATGGTGTGTGCTCTGGATCTACTGAGCGGCATGTCCGAGGGGTTGGGACA
GGGCTTCGAAACTCTTTTGGCCTCCAGTAATCTTCTGCCGTTGCTCCTAC
AG
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