mRNA_H-paniculata_contig52618.12638.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig52618.12638.1
Unique NamemRNA_H-paniculata_contig52618.12638.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig52618.12638.1 vs. uniprot
Match: D7G647_ECTSI (RTW, Ras superfamily GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G647_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 5.100e-52
Identity = 81/92 (88.04%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:    1 QVIILGDSAVGKSKLMERYLMDEYNPRQLPTFALTLFRKNARLGNGAEVKVDFWDTAGQERFSSMHPSYYYRAHACILVFDVTRKATYKSLT 276
            +VI+LGDSAVGKSKL+ERYLMDEYNPRQL TFALTLFRKNA+L +G EVKVDFWDTAGQERFSSMHPSYYYRAHACI+VFDVTRKATYK+L+
Sbjct:   25 KVILLGDSAVGKSKLVERYLMDEYNPRQLSTFALTLFRKNAKLDDGVEVKVDFWDTAGQERFSSMHPSYYYRAHACIMVFDVTRKATYKNLS 116
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BLAST of mRNA_H-paniculata_contig52618.12638.1 vs. uniprot
Match: A0A835ZG89_9STRA (RTW, ras superfamily GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG89_9STRA)

HSP 1 Score: 160 bits (404), Expect = 1.560e-47
Identity = 76/91 (83.52%), Postives = 84/91 (92.31%), Query Frame = 1 
Query:    1 QVIILGDSAVGKSKLMERYLMDEYNPRQLPTFALTLFRKNARLGNGAEVKVDFWDTAGQERFSSMHPSYYYRAHACILVFDVTRKATYKSL 273
            +VI+LGDSAVGKSKL+ERYLMDEY+PRQL TFALTLFRKNA L +G    VDFWDTAGQERF+SMHPSYYYRAHACI+VFDVTRKATYK+L
Sbjct:   21 KVILLGDSAVGKSKLVERYLMDEYSPRQLSTFALTLFRKNAVLEDGTRTTVDFWDTAGQERFTSMHPSYYYRAHACIMVFDVTRKATYKNL 111
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BLAST of mRNA_H-paniculata_contig52618.12638.1 vs. uniprot
Match: UPI0014556C86 (rab-like protein 2A n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014556C86)

HSP 1 Score: 146 bits (369), Expect = 9.020e-42
Identity = 70/91 (76.92%), Postives = 81/91 (89.01%), Query Frame = 1 
Query:    1 QVIILGDSAVGKSKLMERYLMDEYNPRQLPTFALTLFRKNARLGNGAEVKVDFWDTAGQERFSSMHPSYYYRAHACILVFDVTRKATYKSL 273
            ++I LGDSAVGKSKL+ER+LMD Y P+QL TFALTLFR N ++G G EV VDFWDTAGQERFSSMHPSYY++AHACI+VFDVTRK TYK+L
Sbjct:   19 KIICLGDSAVGKSKLVERFLMDGYQPQQLSTFALTLFRYNTKVG-GKEVSVDFWDTAGQERFSSMHPSYYHQAHACIMVFDVTRKVTYKNL 108
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BLAST of mRNA_H-paniculata_contig52618.12638.1 vs. uniprot
Match: A0A2D4BD48_PYTIN (Rab family, other n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BD48_PYTIN)

HSP 1 Score: 145 bits (366), Expect = 1.040e-41
Identity = 72/95 (75.79%), Postives = 80/95 (84.21%), Query Frame = 1 
Query:    1 QVIILGDSAVGKSKLMERYLMDEYNPRQLPTFALTLFRKNARL----GNGAEVKVDFWDTAGQERFSSMHPSYYYRAHACILVFDVTRKATYKSL 273
            +VI+LGDSAVGKSKL+ER++MDE+ PRQL TFALTLFRK   L    G    VKVDFWDTAGQERFSSMHPSYYY AHACILVFDVTRK TY++L
Sbjct:   20 KVILLGDSAVGKSKLVERFMMDEFQPRQLSTFALTLFRKEVELEDERGKPQIVKVDFWDTAGQERFSSMHPSYYYGAHACILVFDVTRKTTYQNL 114
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BLAST of mRNA_H-paniculata_contig52618.12638.1 vs. uniprot
Match: A0A125SEA2_9EUKA (RABL2 n=1 Tax=Gefionella okellyi TaxID=2853422 RepID=A0A125SEA2_9EUKA)

HSP 1 Score: 145 bits (365), Expect = 1.750e-41
Identity = 67/92 (72.83%), Postives = 83/92 (90.22%), Query Frame = 1 
Query:    1 QVIILGDSAVGKSKLMERYLMDEYNPRQLPTFALTLFRKNARLGNGAEVKVDFWDTAGQERFSSMHPSYYYRAHACILVFDVTRKATYKSLT 276
            +VI+LGDSAVGKSKL+ER++MD Y+P+QL T+ALTLF  NA + +G +VKVDFWDTAGQERF+SMHPSYYY+AH C+LVFDVTRK TYK+L+
Sbjct:   23 KVILLGDSAVGKSKLVERFMMDAYHPQQLSTYALTLFEHNAEI-DGRKVKVDFWDTAGQERFNSMHPSYYYKAHVCLLVFDVTRKVTYKNLS 113
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BLAST of mRNA_H-paniculata_contig52618.12638.1 vs. uniprot
Match: A0A8B7Z9Q5_ACAPL (rab-like protein 2A n=2 Tax=Valvatida TaxID=41166 RepID=A0A8B7Z9Q5_ACAPL)

HSP 1 Score: 145 bits (365), Expect = 4.040e-41
Identity = 69/91 (75.82%), Postives = 81/91 (89.01%), Query Frame = 1 
Query:    1 QVIILGDSAVGKSKLMERYLMDEYNPRQLPTFALTLFRKNARLGNGAEVKVDFWDTAGQERFSSMHPSYYYRAHACILVFDVTRKATYKSL 273
            ++I LGDSAVGKSKL+ER+LMD Y P+QL T+ALTLFR N ++G G EV VDFWDTAGQERFSSMHPSYY++AHACI+VFDVTRK TYK+L
Sbjct:   23 KIICLGDSAVGKSKLVERFLMDGYQPQQLSTYALTLFRYNTKVG-GQEVAVDFWDTAGQERFSSMHPSYYHQAHACIMVFDVTRKVTYKNL 112
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BLAST of mRNA_H-paniculata_contig52618.12638.1 vs. uniprot
Match: A0A8K1CGD5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGD5_PYTOL)

HSP 1 Score: 143 bits (360), Expect = 8.180e-41
Identity = 69/97 (71.13%), Postives = 81/97 (83.51%), Query Frame = 1 
Query:    1 QVIILGDSAVGKSKLMERYLMDEYNPRQLPTFALTLFRKNARL----GNGAEVKVDFWDTAGQERFSSMHPSYYYRAHACILVFDVTRKATYKSLTG 279
            +VI+LGDSAVGKSKL+ER++M+E+ PRQL TFALTLFRK   +    G    +KVDFWDTAGQERFSSMHPSYYY A ACI+VFDVTRK TY++LTG
Sbjct:   18 KVILLGDSAVGKSKLVERFMMNEFQPRQLSTFALTLFRKEVEIPDEKGKSQVIKVDFWDTAGQERFSSMHPSYYYGATACIMVFDVTRKVTYQNLTG 114
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BLAST of mRNA_H-paniculata_contig52618.12638.1 vs. uniprot
Match: A9VEC1_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9VEC1_MONBE)

HSP 1 Score: 142 bits (358), Expect = 1.130e-40
Identity = 68/91 (74.73%), Postives = 80/91 (87.91%), Query Frame = 1 
Query:    1 QVIILGDSAVGKSKLMERYLMDEYNPRQLPTFALTLFRKNARLGNGAEVKVDFWDTAGQERFSSMHPSYYYRAHACILVFDVTRKATYKSL 273
            +VI LGDSAVGKSKL+ER+LMD+Y P QL TFALTLFR NA++  G +V VDFWDTAGQERF+S+HPSYY+ AH+CILVFDVTRK TYK+L
Sbjct:    9 KVICLGDSAVGKSKLVERFLMDDYKPHQLSTFALTLFRHNAKV-EGKDVVVDFWDTAGQERFASVHPSYYHEAHSCILVFDVTRKVTYKNL 98
[Close]
BLAST of mRNA_H-paniculata_contig52618.12638.1 vs. uniprot
Match: A0A125SEA6_9STRA (RABL2 n=1 Tax=Trachydiscus minutus TaxID=1032745 RepID=A0A125SEA6_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.500e-40
Identity = 66/92 (71.74%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:    1 QVIILGDSAVGKSKLMERYLMDEYNPRQLPTFALTLFRKNARLGNGAEVKVDFWDTAGQERFSSMHPSYYYRAHACILVFDVTRKATYKSLT 276
            ++I+LGDSAVGKSKL+ERYLMDEYNPRQL T+ALTL+RK   L  G    +D WDTAGQERF+S+HPSYYY AH CILVFDVTRK TY+ L+
Sbjct:   35 KIILLGDSAVGKSKLVERYLMDEYNPRQLSTYALTLYRKTVVLEEGNTYDIDLWDTAGQERFNSLHPSYYYGAHCCILVFDVTRKVTYQHLS 126
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BLAST of mRNA_H-paniculata_contig52618.12638.1 vs. uniprot
Match: A0A1S3I0L2_LINUN (rab-like protein 2A n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3I0L2_LINUN)

HSP 1 Score: 140 bits (353), Expect = 1.590e-40
Identity = 69/91 (75.82%), Postives = 79/91 (86.81%), Query Frame = 1 
Query:    1 QVIILGDSAVGKSKLMERYLMDEYNPRQLPTFALTLFRKNARLGNGAEVKVDFWDTAGQERFSSMHPSYYYRAHACILVFDVTRKATYKSL 273
            +VI LGDSAVGKSKL+ER+LMD Y P+QL T+ALTLFR   ++ N  EV VDFWDTAGQERFSSMHPSYY++AHACILVFDVTRK TYK+L
Sbjct:   21 KVICLGDSAVGKSKLVERFLMDGYQPQQLSTYALTLFRYKTKV-NKKEVAVDFWDTAGQERFSSMHPSYYHQAHACILVFDVTRKITYKNL 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig52618.12638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G647_ECTSI5.100e-5288.04RTW, Ras superfamily GTPase n=2 Tax=Ectocarpus Tax... [more]
A0A835ZG89_9STRA1.560e-4783.52RTW, ras superfamily GTPase n=1 Tax=Tribonema minu... [more]
UPI0014556C869.020e-4276.92rab-like protein 2A n=1 Tax=Asterias rubens TaxID=... [more]
A0A2D4BD48_PYTIN1.040e-4175.79Rab family, other n=1 Tax=Pythium insidiosum TaxID... [more]
A0A125SEA2_9EUKA1.750e-4172.83RABL2 n=1 Tax=Gefionella okellyi TaxID=2853422 Rep... [more]
A0A8B7Z9Q5_ACAPL4.040e-4175.82rab-like protein 2A n=2 Tax=Valvatida TaxID=41166 ... [more]
A0A8K1CGD5_PYTOL8.180e-4171.13Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A9VEC1_MONBE1.130e-4074.73Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A125SEA6_9STRA1.500e-4071.74RABL2 n=1 Tax=Trachydiscus minutus TaxID=1032745 R... [more]
A0A1S3I0L2_LINUN1.590e-4075.82rab-like protein 2A n=1 Tax=Lingula unguis TaxID=7... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig52618contigH-paniculata_contig52618:303..1080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.9
Seed ortholog evalue2.2e-33
Seed eggNOG ortholog2880.D7G647
Preferred nameRABL2B
KEGG koko:K07883,ko:K07931,ko:K07976,ko:K17977
Hectar predicted targeting categoryother localisation
GOsGO:0000001,GO:0000003,GO:0000131,GO:0000166,GO:0000242,GO:0000902,GO:0000904,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005813,GO:0005814,GO:0005815,GO:0005856,GO:0005929,GO:0005933,GO:0005934,GO:0005935,GO:0006810,GO:0006928,GO:0006996,GO:0007005,GO:0007017,GO:0007018,GO:0007029,GO:0007030,GO:0007275,GO:0007338,GO:0007399,GO:0008150,GO:0008594,GO:0009566,GO:0009653,GO:0009987,GO:0010256,GO:0010970,GO:0012505,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019953,GO:0022008,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030317,GO:0030427,GO:0030705,GO:0030990,GO:0030992,GO:0031503,GO:0031514,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032989,GO:0032991,GO:0035639,GO:0036064,GO:0036094,GO:0036126,GO:0040011,GO:0042073,GO:0042461,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0046530,GO:0046907,GO:0048308,GO:0048309,GO:0048311,GO:0048313,GO:0048468,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051645,GO:0051646,GO:0051649,GO:0051674,GO:0051704,GO:0060271,GO:0070925,GO:0071840,GO:0097159,GO:0097223,GO:0097225,GO:0097367,GO:0097722,GO:0097729,GO:0099111,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1901265,GO:1901363
EggNOG free text desc.GTP binding
EggNOG OGsCOG1100@1,KOG0087@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko04031,ko04131
Exons2
Model size361
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig52618.12638.1prot_H-paniculata_contig52618.12638.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig52618 348..1022 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930527.5192556-UTR-H-paniculata_contig52618:302..3471622930527.5192556-UTR-H-paniculata_contig52618:302..347Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig52618 303..347 +
1691481332.9600992-UTR-H-paniculata_contig52618:302..3471691481332.9600992-UTR-H-paniculata_contig52618:302..347Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig52618 303..347 +
1622930527.572712-UTR-H-paniculata_contig52618:1022..10801622930527.572712-UTR-H-paniculata_contig52618:1022..1080Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig52618 1023..1080 +
1691481332.9909453-UTR-H-paniculata_contig52618:1022..10801691481332.9909453-UTR-H-paniculata_contig52618:1022..1080Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig52618 1023..1080 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930527.5376136-CDS-H-paniculata_contig52618:347..4561622930527.5376136-CDS-H-paniculata_contig52618:347..456Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52618 348..456 +
1691481332.972582-CDS-H-paniculata_contig52618:347..4561691481332.972582-CDS-H-paniculata_contig52618:347..456Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52618 348..456 +
1622930527.556353-CDS-H-paniculata_contig52618:873..10221622930527.556353-CDS-H-paniculata_contig52618:873..1022Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52618 874..1022 +
1691481332.981825-CDS-H-paniculata_contig52618:873..10221691481332.981825-CDS-H-paniculata_contig52618:873..1022Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52618 874..1022 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig52618.12638.1

>prot_H-paniculata_contig52618.12638.1 ID=prot_H-paniculata_contig52618.12638.1|Name=mRNA_H-paniculata_contig52618.12638.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
MERYLMDEYNPRQLPTFALTLFRKNARLGNGAEVKVDFWDTAGQERFSSM
HPSYYYRAHACILVFDVTRKATYKSLTGTGAAAVL*
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mRNA from alignment at H-paniculata_contig52618:303..1080+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig52618.12638.1 ID=mRNA_H-paniculata_contig52618.12638.1|Name=mRNA_H-paniculata_contig52618.12638.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=778bp|location=Sequence derived from alignment at H-paniculata_contig52618:303..1080+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGATAATACTGGGTGATTCTGCCGTGGGCAAGTCTAAACTTATGGA
GCGGTATCTCATGGATGAGTACAACCCCAGGCAGCTACCTACATTTGCGC
TCACGCTTTTCCGAAAGAACGCTCGGTTAGGGAACGGGGCGGAAGTGAAA
GTAGGTGAGCAGCAAGCTTAAAAACAAAAATGGTTATGGCGTACAGTGGT
TTTACATTGTTAACGCATGCCGATCGACTTGTGCTTCGAAATTGTGGGTG
GCATGCACGTGAGACCGCACGAAACTGAGTTACCTGTTACCTTAATCGCA
AGGGCTCTCGAACAAATAACGAAGACAACTCAATAGCCGGAACGAGTGAG
TGGTAGCGCCACAAAGCCGTATTCCTCAGAAATATCTTGCTTGTGCCCGA
CAATAAGGATCCGCTTTAAAGCCGTCGTCGTCGTTGCCTGTATTGCCCAC
ACTCGATCTCTGATTCGTTGTAATTTGTTGGCTGTTTCATTTCTTGTTGT
GGCTTTCTTCAGCGACTCACAATCGGTATTCACGCTTCAGACCTCCCGTG
GCAAAACATTTCGACAAACAGATTTTTGGGACACGGCGGGGCAGGAAAGA
TTCAGCAGTATGCACCCGTCATACTACTACCGTGCGCACGCGTGCATTTT
GGTTTTTGACGTGACGCGGAAGGCCACTTACAAGAGCCTCACCGGTACGG
GAGCTGCGGCAGTACTGTGAAGGGATCCCATGTTTGCTGGTAGCAAACAA
GATCGACGTCGATTACAACGTAAGTAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig52618:303..1080+

>mRNA_H-paniculata_contig52618.12638.1 ID=mRNA_H-paniculata_contig52618.12638.1|Name=mRNA_H-paniculata_contig52618.12638.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig52618:303..1080+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCGGTATCTCATGGATGAGTACAACCCCAGGCAGCTACCTACATT
TGCGCTCACGCTTTTCCGAAAGAACGCTCGGTTAGGGAACGGGGCGGAAG
TGAAAGTAGATGGAGCGGTATCTCATGGATGAGTACAACCCCAGGCAGCT
ACCTACATTTGCGCTCACGCTTTTCCGAAAGAACGCTCGGTTAGGGAACG
GGGCGGAAGTGAAAGTAGATTTTTGGGACACGGCGGGGCAGGAAAGATTC
AGCAGTATGCACCCGTCATACTACTACCGTGCGCACGCGTGCATTTTGGT
TTTTGACGTGACGCGGAAGGCCACTTACAAGAGCCTCACCGGTACGGGAG
CTGCGGCAGTACTGTGAATTTTTGGGACACGGCGGGGCAGGAAAGATTCA
GCAGTATGCACCCGTCATACTACTACCGTGCGCACGCGTGCATTTTGGTT
TTTGACGTGACGCGGAAGGCCACTTACAAGAGCCTCACCGGTACGGGAGC
TGCGGCAGTACTGTGA
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