prot_H-paniculata_contig5260.12637.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5260.12637.1
Unique Nameprot_H-paniculata_contig5260.12637.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length297
Homology
BLAST of mRNA_H-paniculata_contig5260.12637.1 vs. uniprot
Match: D7G5I6_ECTSI (RRP7 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5I6_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 1.180e-70
Identity = 147/309 (47.57%), Postives = 173/309 (55.99%), Query Frame = 0
Query:    8 VAKGYRVVPQRLWPAPVESPSSVPGVRPGAGYRYLHIKEHRGIFR--VTSGKNHGEAVKAREFAKGTTLFVGNVDDQGGRLCRKEIADRLRRAFSNCGHVSHVQISPPEGTDNHKTI-NGRGQAQVGKKAMLGSRFAHVSFSTADGVQAALALQGISSGTDLQKKCKKSRKRTREGAEDEESRDE---------NGDETLGYAGLIQRHRRNFLPRSELQAEVDTIMERFEDEEAEEAAKRKALLENPTDDDGFITVTYKKKRGRSV-------PLPVAADLAAANAAAGVKKKRKGAGSLPDFYRFQV 297
            VAKGYRVVPQ L  A         G     G+R+LH+KEH+G+F+  V++    G        A+GTTLFVGNVDDQGGRLCRK I  RLRRA S CG + HVQ+S          + + RG    G+K    +RFAHV FS+  GVQ ALAL+ + SG                                   NGDET GYA LIQRHRR F PR  LQ EVD  M RFE+EE+ E A+RKA+LENP  DDGF+TVTYK+KRGR+        P  V A         G KKKRKGAG L DFYRFQ+
Sbjct:    4 VAKGYRVVPQALADA---------GAGTSRGFRHLHLKEHKGLFKAAVSAAGGEGGRETTAASARGTTLFVGNVDDQGGRLCRKTIEARLRRALSPCGKILHVQVSAAASAATGGGVGDARGTTVTGRKHTGAARFAHVCFSSTKGVQRALALEQLPSGASTASATXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGDETCGYAALIQRHRRKFPPRKALQEEVDATMLRFEEEESAEIAQRKAMLENPEGDDGFVTVTYKRKRGRNSGGGTGNPPDGVVAG--------GAKKKRKGAGELSDFYRFQM 295          
BLAST of mRNA_H-paniculata_contig5260.12637.1 vs. uniprot
Match: A0A835Z5W2_9STRA (Ribosomal RNA-processing protein 7-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5W2_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 7.400e-8
Identity = 60/226 (26.55%), Postives = 91/226 (40.27%), Query Frame = 0
Query:   41 YLHIKEHRGIFRVTSGKNHGEAVKAREFAKGTTLFVGNVDDQGGRLCRKEIADRLRRAFSNCGHVSHVQI--------SPPEGTDNHKT--INGRGQAQVGKKAMLGSRFAHVSFSTADGVQAALALQGISSGTDLQKKCKKSRKRTREGAEDEESRDENGDETLGYAGLIQRHRRNFLPRSELQAEVDTIMERFEDEEAEEAAKRKALLENPTDDDGFITVTYKK 256
            Y+ +KEHR       G   G          G TLF  NVDD GG L    +  RL   +   G +  V++           +G D+  +  + G G   +G +A    R A + FS A  ++ ALA + +    D                        +     G A ++Q++R       EL+  VD  ++ F+ +EAE+  +R        D DGF+TVTYKK
Sbjct:   23 YVFVKEHR------EGPGSGA---------GRTLFAVNVDDDGGTLTDAALKARLTAQWEGFGPIDAVELVERDSSGKGAGKGVDSSSSGHLAGVGAEPLGTRA----RCARIRFSDAAALKRALAAKQLPRPPD------------------------DAGRLTGLAAVVQQYRDARPDHEELRQRVDAYIQHFDAKEAEDEQERLDAKNQQPDADGFVTVTYKK 205          
BLAST of mRNA_H-paniculata_contig5260.12637.1 vs. uniprot
Match: L8HHU1_ACACA (RRP7 domain-containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HHU1_ACACA)

HSP 1 Score: 61.6 bits (148), Expect = 4.160e-7
Identity = 81/277 (29.24%), Postives = 116/277 (41.88%), Query Frame = 0
Query:   41 YLHIKEHRGIFRVTSGKNHGEAVKAREFAKGTTLFVGNVDDQGGRLCRKEIADRLRRAFSNCGH-VSHVQIS-----PPEGTDNHKTI----------NGRGQ----AQVGKKAMLGSRFAHVSFSTADGVQAALALQGISSGTDLQKKCKKSRKRTREGAEDEESRDENGDETLGYAGLIQRHRRNFLPRSELQAEVDTIMERFEDEEAEEAAKRKALLENPTDDDGFITVTYK-KKRGRSVPLPVAADLAAANAAAGVKKKRKGAGSLPDFYRFQ 296
            YL+I++HR   +V          +  E    +TLFV NV D         + D+LRR F  CGH V  V +      PP   D+H+             GRG     AQ          FAHV+FS+ DG++AAL     S+                  AE + + +  G        L++       P+  L AEVD  M  F+  +     + +A L  P D DGF+TV  K +K+     +P+A+  AA   AA  +++      L DFYRFQ
Sbjct:   98 YLYIRQHRAGSQVDDDPRGHHPTE--EAGATSTLFVANVGDDADAGA---VEDQLRRLFERCGHPVESVTLKSMRRVPP--ADSHRQXXXXXXRPAHQGGRGPWLEVAQADDAEARPLVFAHVTFSSPDGLRAALRYDWNSAAA----------------AESDAAGEAAGSGRGVNKWLLEYEEARPDPQRVL-AEVDAFMADFDRRQRLAEKEEEAALGKP-DADGFVTVRRKGRKKVADGGIPIASAKAAPALAAKAQRQESDK-VLLDFYRFQ 348          
BLAST of mRNA_H-paniculata_contig5260.12637.1 vs. uniprot
Match: A0A067QKC0_ZOONE (Ribosomal RNA-processing protein 7-like protein A n=2 Tax=Zootermopsis nevadensis TaxID=136037 RepID=A0A067QKC0_ZOONE)

HSP 1 Score: 55.8 bits (133), Expect = 2.100e-5
Identity = 74/246 (30.08%), Postives = 98/246 (39.84%), Query Frame = 0
Query:   57 KNHGEAVKAREFAKGTTLFVGNVDDQGGRLCRKEIADRLRRAFSNCGHVSHVQI--SPPEGTDNHKTINGRGQAQVGKKAMLGSRFAHVSFSTADGVQAALALQGISSGTDLQKKCKKSRKRTREGAEDEESRDENGDETLGYAGL---IQRHRRNFLPRSELQAEVDTIMERFEDEEAEEAAKRKALLENPTDDDGFITVTYKKKRGRSVPLPVAADLAAANAAAGVKKKRKGAGSLPDFYRFQV 297
            K H    K        TLF+ NV       C K   D  +R FS CG V+ V     P  GT    T     Q       + G + A+V F    G+Q AL L        L   C K                    ET    GL    Q +       S LQ E+DT ME+F+DE   +A K K +++   D++G+ITVT   KRGR      A   +      G +K+R+    L +FYRFQ+
Sbjct:   30 KEHSVREKNSSKPTNRTLFIINVPP----YCNK---DCFKRIFSVCGSVTSVFFHQKPSAGT----TPPEESQFFTKCPRIKGFKVAYVVFEDNRGLQRALKLGENMKPVIL---CTK--------------------ETPILCGLQKWCQEYNNRIPDISLLQKEIDTFMEKFDDEAHRKALKEKEMMQE--DEEGWITVT---KRGRKPGF--ARKESVEKKIMGKEKQRRSKKELRNFYRFQI 234          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5260.12637.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G5I6_ECTSI1.180e-7047.57RRP7 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835Z5W2_9STRA7.400e-826.55Ribosomal RNA-processing protein 7-domain-containi... [more]
L8HHU1_ACACA4.160e-729.24RRP7 domain-containing protein n=1 Tax=Acanthamoeb... [more]
A0A067QKC0_ZOONE2.100e-530.08Ribosomal RNA-processing protein 7-like protein A ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 211..242
IPR024326Ribosomal RNA-processing protein 7, C-terminal domainPFAMPF12923RRP7coord: 206..297
e-value: 3.8E-16
score: 59.3
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 53..171
e-value: 7.9E-8
score: 34.3
IPR040446Ribosomal RNA-processing protein 7PANTHERPTHR13191RIBOSOMAL RNA PROCESSING PROTEIN 7-RELATEDcoord: 63..296
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 64..160

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5260contigH-paniculata_contig5260:500..8512 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5260.12637.1mRNA_H-paniculata_contig5260.12637.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5260 500..8512 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5260.12637.1 ID=prot_H-paniculata_contig5260.12637.1|Name=mRNA_H-paniculata_contig5260.12637.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=297bp
MSGPAPTVAKGYRVVPQRLWPAPVESPSSVPGVRPGAGYRYLHIKEHRGI
FRVTSGKNHGEAVKAREFAKGTTLFVGNVDDQGGRLCRKEIADRLRRAFS
NCGHVSHVQISPPEGTDNHKTINGRGQAQVGKKAMLGSRFAHVSFSTADG
VQAALALQGISSGTDLQKKCKKSRKRTREGAEDEESRDENGDETLGYAGL
IQRHRRNFLPRSELQAEVDTIMERFEDEEAEEAAKRKALLENPTDDDGFI
TVTYKKKRGRSVPLPVAADLAAANAAAGVKKKRKGAGSLPDFYRFQV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024326RRP7_C
IPR012677Nucleotide-bd_a/b_plait_sf
IPR040446RRP7
IPR035979RBD_domain_sf