mRNA_H-paniculata_contig11994.1263.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig11994.1263.1 vs. uniprot
Match: D7G3B8_ECTSI (DNA primase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3B8_ECTSI) HSP 1 Score: 505 bits (1301), Expect = 1.780e-166 Identity = 258/338 (76.33%), Postives = 282/338 (83.43%), Query Frame = 1
Query: 1 QEGFKMDTLVDAGLVPDTSKWKYPPSPDNPRIRVDRFRGRLVVPIRDHRGSVIGFGARDLSDSQASIGNVGSGFVIPKPTKKSKLKGNKALVEEV----------------DATGAGAGAAREDKKIRPPAKYLNSPETSLFKKGKNVFGLDLAKEAIRSQDMAVVVEGYFDVIKLHDAGVRNAVGVLGTAITIDQLQLCARYSKSKRVVLCMDGDDAGHRAVERLCENPATSGLDSLSEAGVSVSVASIPRDSGCKDPADFLQAHGAEAFRIQVIGEAMPWTDWYGDQILKEHGDFAADANAFRRCTDRLTGFISDLSIPSDQTFHVHRFAKALADG 966
QEGF+MDTLVDAGLVPDTSKWKY PSP++ R RVDRFRGRLVVPIRDHRG VIGFGARDLSDSQA G+VGSGFVIP +KK K K E G GA A + +KK RPPAKYLNSPET+LFKKGKNVFGLDLAKEA+RS+D A VVEGYFDVIKLHDAG+R AVGVLGTAITIDQLQLCARY+KSKRV+LCMDGD AG RAVERLCE+PA+SGLDSLSEAGVSVSVA+IP D GCKDPADFLQAHGAE FR +V+G+A+PW+DWYGD IL +H DFA DANAFRRCTDRLTGF+SDLSIP+DQTFHVHRFAKALA G
Sbjct: 364 QEGFEMDTLVDAGLVPDTSKWKYRPSPNDARGRVDRFRGRLVVPIRDHRGLVIGFGARDLSDSQAQ-GSVGSGFVIPDVSKKGKAKKKGEQTEAAAXXXXXXXXXXXXAGGKGVGEGADAGKWEKKARPPAKYLNSPETTLFKKGKNVFGLDLAKEAMRSEDTAFVVEGYFDVIKLHDAGIRCAVGVLGTAITIDQLQLCARYTKSKRVILCMDGDAAGRRAVERLCESPASSGLDSLSEAGVSVSVATIPEDPGCKDPADFLQAHGAEEFRAKVMGKAVPWSDWYGDSILADH-DFAGDANAFRRCTDRLTGFMSDLSIPTDQTFHVHRFAKALAGG 699
BLAST of mRNA_H-paniculata_contig11994.1263.1 vs. uniprot
Match: A0A6H5K157_9PHAE (Toprim domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K157_9PHAE) HSP 1 Score: 483 bits (1244), Expect = 1.290e-157 Identity = 256/378 (67.72%), Postives = 282/378 (74.60%), Query Frame = 1
Query: 1 QEGFKMDTLVDAGLVPDTSKWKYPPSPDNPRIRVDRFRGRLVVPIRDHRGSVIGFGARDLSDSQASIGNVGSGFVIPKPTKKSKLKGNKALVEEVDAT--------------------------------------------------------GAGAGAAREDKKIRPPAKYLNSPETSLFKKGKNVFGLDLAKEAIRSQDMAVVVEGYFDVIKLHDAGVRNAVGVLGTAITIDQLQLCARYSKSKRVVLCMDGDDAGHRAVERLCENPATSGLDSLSEAGVSVSVASIPRDSGCKDPADFLQAHGAEAFRIQVIGEAMPWTDWYGDQILKEHGDFAADANAFRRCTDRLTGFISDLSIPSDQTFHVHRFAKALADG 966
QEGF+MDTLVDAGLVPDTSKWKY PSP++ R RVDRFRGRLVVPIRDHRG VIGFGARDLSDSQA G+VGSGFVIP+ + K K K E A G GA A + +KK RPPAKYLNSPET+LFKKGKNVFGLDLAKEA+RS+D A VVEGYFDVIKLHDAG+R AVGVLGTAITIDQLQLCARY+KSKRV+LCMDGD AG RAVERLCE+PA+SGLDSLSEAGVSVSVA+IP DSGCKDPADFLQAHGAE FR +V+ +A+PW+ WYGD IL +H DFA+DANAFRRCTDRL GF+SDLSIP+DQTFHVHRFAKALA G
Sbjct: 158 QEGFEMDTLVDAGLVPDTSKWKYRPSPNDARGRVDRFRGRLVVPIRDHRGLVIGFGARDLSDSQAQ-GSVGSGFVIPEVSNKGKAKKKGEQTEAAAAATGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGKGVGEGAVAGKWEKKARPPAKYLNSPETTLFKKGKNVFGLDLAKEAMRSEDTAFVVEGYFDVIKLHDAGIRCAVGVLGTAITIDQLQLCARYTKSKRVILCMDGDAAGRRAVERLCESPASSGLDSLSEAGVSVSVATIPEDSGCKDPADFLQAHGAEEFRAKVMDKAVPWSVWYGDSILADH-DFASDANAFRRCTDRLAGFMSDLSIPTDQTFHVHRFAKALAGG 533
BLAST of mRNA_H-paniculata_contig11994.1263.1 vs. uniprot
Match: A0A835YIS2_9STRA (Toprim domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIS2_9STRA) HSP 1 Score: 233 bits (593), Expect = 4.450e-69 Identity = 134/288 (46.53%), Postives = 166/288 (57.64%), Query Frame = 1
Query: 100 VDRFRGRLVVPIRDHRGSVIGFGARDLSDSQASIGNVGSGFVIPKPTKKSKLKGNKALVEEVDATGAGAGAAREDKKIRPPAKYLNSPETSLFKKGKNVFGLDLAKEAIRSQDMAVVVEGYFDVIKLHDAGVRNAVGVLGTAITIDQLQLCARYSKSKRVVLCMDGDDAGHRAVERLCENPATSGLDSLSEAGVSVSVASIPRDS-GCKDPADFLQAHGAEAFRIQVIGEAMPWTDWYGDQILKEHGDFAADANAFRRCTDRLTGFISDLSIPSDQTFHVHRFAKALA 960
+DRFRGRL+VPIRD RG+V+ FG R+L +R KYLNSPET +F KG +FGLD A++AIR +DMAV+VEGYFDVI LH AGVR AVG LGTA+T QL L AR+S+ +RVVLCMD D AG +AVERLCE A L+ + G+ V VA I + GCKDP+DF+ A G PWT WY D++L H D DA AFR C D+LT F+S L+ P+D+T HV+R A AL+
Sbjct: 219 LDRFRGRLIVPIRDARGAVVAFGGRELPXXXXXXXXXXXXXXXXXXXXXXXX-------------------------VRKVPKYLNSPETDVFHKGGMLFGLDAARDAIRDEDMAVLVEGYFDVIALHGAGVRCAVGALGTAVTPRQLDLAARHSRGRRVVLCMDADAAGAKAVERLCEGGA---LEEAAANGIEVRVADIAAAAPGCKDPSDFVAEAAAAXXXXAGKGGKAPWTVWYTDRVLAAH-DHGGDAAAFRACVDKLTTFLSALADPADRTNHVYRVAAALS 477
BLAST of mRNA_H-paniculata_contig11994.1263.1 vs. uniprot
Match: A0A7S3Y9A4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y9A4_HETAK) HSP 1 Score: 215 bits (547), Expect = 9.090e-65 Identity = 130/289 (44.98%), Postives = 168/289 (58.13%), Query Frame = 1
Query: 100 VDRFRGRLVVPIRDHRGSVIGFGARDLSDSQASIGNVGSGFVIPKPTKKSKLKGNKALVEEVDATGAGAGAAREDKKIRPPAKYLNSPETSLFKKGKNVFGLDLAKEAIRSQDMAVVVEGYFDVIKLHDAGVRNAVGVLGTAITIDQLQLCARYSKSKRVVLCMDGDDAGHRAVERLCENPATSGLDSLSEAGVSVSVASIPRDSGCKDPADFLQAHGAEAFRIQVIGEAMPWTDWYGDQILKEHGDFAADANAFRRCTDRLTGFISDLSIPSDQTFHVHRFAKALADG 966
+DRFRGRL+VPIRD G V+GFGAR L+D Q KP KYLNSPE +F KG+ +FGLD AK A R + ++VEGYFDVI LH + NAVGVLG+AIT + L+ A+ +K KRVVL MD D AG AV LC A+ L +L+E GVSV VA++ D+ KDPA+FL A AE +R Q+I +A W++WYGD +L E+ A D +FRR + LT F++ L +D+TFH +RFAK LA+G
Sbjct: 13 IDRFRGRLMVPIRDGAGEVVGFGARSLTDGQ-------------KP------------------------------------KYLNSPEGPVFSKGRTLFGLDAAKAAARERGEVILVEGYFDVIALHSQNITNAVGVLGSAITDENLRAAAKLTKDKRVVLNMDADAAGAGAVAGLC---ASGRLLALAEEGVSVKVATMAGDA--KDPAEFLIAQSAEEYRSQIIEKAQVWSEWYGDYLLSEYE--ADDPESFRRVVNSLTAFLATLPA-ADRTFHCYRFAKKLANG 244
BLAST of mRNA_H-paniculata_contig11994.1263.1 vs. uniprot
Match: A0A8J6SNQ8_9CYAN (DNA primase n=4 Tax=Cyanobacteria TaxID=1117 RepID=A0A8J6SNQ8_9CYAN) HSP 1 Score: 171 bits (434), Expect = 7.850e-45 Identity = 110/288 (38.19%), Postives = 150/288 (52.08%), Query Frame = 1
Query: 103 DRFRGRLVVPIRDHRGSVIGFGARDLSDSQASIGNVGSGFVIPKPTKKSKLKGNKALVEEVDATGAGAGAAREDKKIRPPAKYLNSPETSLFKKGKNVFGLDLAKEAIRSQDMAVVVEGYFDVIKLHDAGVRNAVGVLGTAITIDQLQLCARYSKSKRVVLCMDGDDAGHRAVERLCENPATSGLDSLSEAGVSVSVASIPRDSGCKDPADFLQAHGAEAFRIQVIGEAMPWTDWYGDQILKEHGDFAADANAFRRCTDRLTGFISDLSIPSDQTFHVHRFAKALADG 966
DRFR RL++PI D +G VIGFG R LSD Q KYLNSPET LF KGK +FGLD A+ AI QD AVVVEGYFDVI LH AG+ N V LGTA+++ Q++L RY++SK+VVL D D AG +A ER A D + V + V + P+ KDP +FLQ+H A+ +R ++ EA W DW Q+L + + A+ F++ T + + +L + +T ++HR A+ L+ G
Sbjct: 204 DRFRDRLMIPIHDLQGRVIGFGGRTLSDEQP--------------------------------------------------KYLNSPETELFDKGKTLFGLDKARGAIAKQDCAVVVEGYFDVIALHAAGINNVVASLGTALSLVQVRLLLRYTESKQVVLNFDADAAGAKAAERAIGEVA----DLAYKGEVQLRVLNTPQG---KDPDEFLQSHSADDYRA-LLAEAPLWLDWQIQQLLADAD--LSKADQFQQSTQAIVKLLGNLPNATLRTHYIHRCAELLSRG 431
BLAST of mRNA_H-paniculata_contig11994.1263.1 vs. uniprot
Match: A0A1Z4JEI4_LEPBY (DNA primase n=2 Tax=Leptolyngbya TaxID=47251 RepID=A0A1Z4JEI4_LEPBY) HSP 1 Score: 168 bits (425), Expect = 1.290e-43 Identity = 108/288 (37.50%), Postives = 146/288 (50.69%), Query Frame = 1
Query: 103 DRFRGRLVVPIRDHRGSVIGFGARDLSDSQASIGNVGSGFVIPKPTKKSKLKGNKALVEEVDATGAGAGAAREDKKIRPPAKYLNSPETSLFKKGKNVFGLDLAKEAIRSQDMAVVVEGYFDVIKLHDAGVRNAVGVLGTAITIDQLQLCARYSKSKRVVLCMDGDDAGHRAVERLCENPATSGLDSLSEAGVSVSVASIPRDSGCKDPADFLQAHGAEAFRIQVIGEAMPWTDWYGDQILKEHGDFAADANAFRRCTDRLTGFISDLSIPSDQTFHVHRFAKALADG 966
DRFR RL+VPI+D +G VIGFG R L+D Q KYLNSPET LF KG+ +FGLD AK AI QD AVVVEGYFDVI LH AGV NAV LGTA++I Q++ RY++SKRVV D D AG +A ER AT + V + V ++P KDP DFL+ H A+A++ ++ A W DW +Q + ++ F++ + + +L PS +T ++H ++ L+ G
Sbjct: 204 DRFRNRLMVPIQDSQGRVIGFGGRTLTDEQP--------------------------------------------------KYLNSPETELFDKGRTLFGLDKAKSAIAKQDQAVVVEGYFDVIALHAAGVTNAVASLGTALSIAQVKQLLRYTESKRVVFNFDADRAGVQAAERAIGEVATLAY----QGEVQLRVLNLPDG---KDPDDFLKNHSAKAYQ-DLLDHAPLWLDWQINQAISNQD--LKQSDQFQQAVMAIVALLGNLPNPSLRTHYIHHCSELLSQG 431
BLAST of mRNA_H-paniculata_contig11994.1263.1 vs. uniprot
Match: K8GMC4_9CYAN (DNA primase n=2 Tax=Leptolyngbyaceae cyanobacterium JSC-12 TaxID=864702 RepID=K8GMC4_9CYAN) HSP 1 Score: 166 bits (420), Expect = 9.340e-43 Identity = 105/289 (36.33%), Postives = 151/289 (52.25%), Query Frame = 1
Query: 103 DRFRGRLVVPIRDHRGSVIGFGARDLSDSQASIGNVGSGFVIPKPTKKSKLKGNKALVEEVDATGAGAGAAREDKKIRPPAKYLNSPETSLFKKGKNVFGLDLAKEAIRSQDMAVVVEGYFDVIKLHDAGVRNAVGVLGTAITIDQLQLCARYSKSKRVVLCMDGDDAGHRAVERLCENPATSGLDSLSEAG-VSVSVASIPRDSGCKDPADFLQAHGAEAFRIQVIGEAMPWTDWYGDQILKEHGDFAADANAFRRCTDRLTGFISDLSIPSDQTFHVHRFAKALADG 966
DRFR RL++PI D +G V+GFG R L+D Q KYLNSPET LF KGK +FGLD A+ AI QD AVVVEGYFDVI LHDAG+ N V +GTA++ Q++ RY++SKR+VL D D+AG++A ER A S ++ L+ G + + V +IP KDP +FL++H A ++ +++ A W DW ++ + E AD F+ + + +L + +T ++HR A+ L+ G
Sbjct: 235 DRFRDRLMIPIHDLQGRVVGFGGRTLTDEQP--------------------------------------------------KYLNSPETELFDKGKLLFGLDKARAAIAKQDQAVVVEGYFDVIALHDAGITNVVASMGTALSSAQVRQLLRYTESKRIVLNFDADNAGNQAAER-----AVSEVEMLAYRGDIQLRVLNIPAG---KDPDEFLKSHSAAEYQ-ELVDTAPLWLDWQIERAIAERDPKQADQ--FQTMVQAMVKLLGNLPSATLRTHYIHRCAERLSQG 462
BLAST of mRNA_H-paniculata_contig11994.1263.1 vs. uniprot
Match: UPI001682F21C (DNA primase n=1 Tax=Pseudanabaena sp. FACHB-2040 TaxID=2692859 RepID=UPI001682F21C) HSP 1 Score: 166 bits (419), Expect = 1.180e-42 Identity = 114/323 (35.29%), Postives = 156/323 (48.30%), Query Frame = 1
Query: 1 QEGFKMDTLVDAGL-VPDTSKWKYPPSPDNPRIRVDRFRGRLVVPIRDHRGSVIGFGARDLSDSQASIGNVGSGFVIPKPTKKSKLKGNKALVEEVDATGAGAGAAREDKKIRPPAKYLNSPETSLFKKGKNVFGLDLAKEAIRSQDMAVVVEGYFDVIKLHDAGVRNAVGVLGTAITIDQLQLCARYSKSKRVVLCMDGDDAGHRAVERLCENPATSGLDSLSEAGVSVSVASIPRDSGCKDPADFLQAHGAEAFRIQVIGEAMPWTDWYGDQILKEHGDFAADANAFRRCTDRLTGFISDLSIPSDQTFHVHRFAKALADG 966
Q+ + +D + AGL VP Y DRFR RL++PIRD + VIGFG R L D KP KYLNSP+T LF KGK ++GLD+AK AI D A+VVEGYFDVI LH AG NAV LGTA+ Q++L RY++SK+++L D D AG +A ER AT L V + V +IP KDP +FLQ H AE +R ++ A W DW Q+LK+ A+ F++ T + +S+++ +T ++ A+ + G
Sbjct: 179 QKRYPVDLIEKAGLIVPRQGGTGY----------YDRFRDRLMIPIRDAQSRVIGFGGRSLGDE--------------KP------------------------------------KYLNSPDTELFDKGKMLYGLDMAKAAIAKDDRAIVVEGYFDVIALHAAGFANAVAALGTALNAAQVRLLLRYTESKQILLNFDADAAGVKAAERAIGEVATMAL----RGDVQLRVLNIPEG---KDPDEFLQTHVAEEYRA-LLDAAPLWIDWQIQQVLKDRD--LRQADQFQQTTQDIVTVLSEIANADTRTHYIRHCAEIFSHG 431
BLAST of mRNA_H-paniculata_contig11994.1263.1 vs. uniprot
Match: A0A7C3VI04_9CYAN (DNA primase n=2 Tax=Oscillatoriales TaxID=1150 RepID=A0A7C3VI04_9CYAN) HSP 1 Score: 164 bits (414), Expect = 5.120e-42 Identity = 113/320 (35.31%), Postives = 161/320 (50.31%), Query Frame = 1
Query: 10 FKMDTLVDAGLV-PDTSKWKYPPSPDNPRIRVDRFRGRLVVPIRDHRGSVIGFGARDLSDSQASIGNVGSGFVIPKPTKKSKLKGNKALVEEVDATGAGAGAAREDKKIRPPAKYLNSPETSLFKKGKNVFGLDLAKEAIRSQDMAVVVEGYFDVIKLHDAGVRNAVGVLGTAITIDQLQLCARYSKSKRVVLCMDGDDAGHRAVERLCENPATSGLDSLSEAGVSVSVASIPRDSGCKDPADFLQAHGAEAFRIQVIGEAMPWTDWYGDQILKEHGDFAADANAFRRCTDRLTGFISDLSIPSDQTFHVHRFAKALADG 966
+ ++ ++ AGL+ P S Y D FR R+++PI D RG +IGFG R +G V +E D++ A +E AKYLNSPET LF KGK +F LD AK AI +D AVVVEGYFD I LH G++NAV LGTAI+I Q++ RYS+SK++VL D D AG +A R A D + V++ + IP KD ++L+ GA A Q++ A W DW +QIL G A+ +++ + + D+ +T++V+R A+ LA G
Sbjct: 178 YPVELVMQAGLIKPRASGGGY----------YDIFRNRIIIPIHDDRGRIIGFGGRLQPPHHLGLGEV----------------------QEADSS-----AIKE-------AKYLNSPETQLFDKGKTLFALDKAKAAITKEDRAVVVEGYFDAIALHAHGIQNAVATLGTAISITQVRQLLRYSESKQIVLNFDADAAGTKAANRAIGEIA----DLAYKGEVNLRILGIPEG---KDADEYLKTPGAAASYRQLLEAAPLWLDWQIEQILL--GKNLKQADQYQQVARAMVALLKDIQHSDTRTYYVNRCAEFLAMG 444
BLAST of mRNA_H-paniculata_contig11994.1263.1 vs. uniprot
Match: A0A0S3U313_9CYAN (DNA primase n=6 Tax=Cyanobacteria TaxID=1117 RepID=A0A0S3U313_9CYAN) HSP 1 Score: 162 bits (410), Expect = 1.650e-41 Identity = 107/289 (37.02%), Postives = 147/289 (50.87%), Query Frame = 1
Query: 103 DRFRGRLVVPIRDHRGSVIGFGARDLSDSQASIGNVGSGFVIPKPTKKSKLKGNKALVEEVDATGAGAGAAREDKKIRPPAKYLNSPETSLFKKGKNVFGLDLAKEAIRSQDMAVVVEGYFDVIKLHDAGVRNAVGVLGTAITIDQLQLCARYSKSKRVVLCMDGDDAGHRAVERLCENPATSGLDSLSEAG-VSVSVASIPRDSGCKDPADFLQAHGAEAFRIQVIGEAMPWTDWYGDQILKEHGDFAADANAFRRCTDRLTGFISDLSIPSDQTFHVHRFAKALADG 966
DRFR RL+VPI D +G VIGFG R LSD Q KYLNSPET LF KGK +FGLD AK AI QD AVVVEGYFDVI LH AGV NAV LGTA+++ Q++ RY++SKRVV D D AG +A ER A + +L+ G V + + +IP KDP D+L+ H A+ ++ ++ + W DW +Q + ++ F++ + + +L P+ +T ++H A+ L+ G
Sbjct: 204 DRFRNRLMVPIHDSQGRVIGFGGRTLSDEQP--------------------------------------------------KYLNSPETDLFDKGKTLFGLDKAKGAIAKQDQAVVVEGYFDVIALHAAGVTNAVASLGTALSVAQVKQLLRYTESKRVVFNFDADRAGVQAAER-----AIGEIANLAYQGEVQLRILNIPDG---KDPDDYLKNHPAQDYQ-NLLDRSPLWLDWQIEQAILNQD--LKQSDQFQQAVTAIVSLLGNLPNPALRTHYIHYCAELLSQG 431 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11994.1263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11994.1263.1 >prot_H-paniculata_contig11994.1263.1 ID=prot_H-paniculata_contig11994.1263.1|Name=mRNA_H-paniculata_contig11994.1263.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=324bp MDTLVDAGLVPDTSKWKYPPSPDNPRIRVDRFRGRLVVPIRDHRGSVIGFback to top mRNA from alignment at H-paniculata_contig11994:563..7404- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11994.1263.1 ID=mRNA_H-paniculata_contig11994.1263.1|Name=mRNA_H-paniculata_contig11994.1263.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6842bp|location=Sequence derived from alignment at H-paniculata_contig11994:563..7404- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11994:563..7404- >mRNA_H-paniculata_contig11994.1263.1 ID=mRNA_H-paniculata_contig11994.1263.1|Name=mRNA_H-paniculata_contig11994.1263.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1944bp|location=Sequence derived from alignment at H-paniculata_contig11994:563..7404- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |