prot_H-paniculata_contig52498.12620.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig52498.12620.1
Unique Name	prot_H-paniculata_contig52498.12620.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	122

Homology

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BLAST of mRNA_H-paniculata_contig52498.12620.1 vs. uniprot
Match: A0A6H5K293_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K293_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 6.740e-13
Identity = 44/125 (35.20%), Postives = 66/125 (52.80%), Query Frame = 0

Query:    3 QHGISHELKPPDTPQYNGVAERRLGLLCEKTIALMQDQTE-----GGSGKLWAEAMTYAYDITTMSCKSSIEGNVTPYEKWYGNTAPLEHLQPFGVVGYMRKIITEHKMAPRGKKCIMLGISHNH 122
            +HGI  E  PP+TP+YNGVAER LGL+ +  +A     T+         +LWAEA++ A      +   S EG+ + YE ++    P+    PF +   + K   + K  P+G+K   LG +HNH
Sbjct:  111 RHGIKQEFTPPNTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPRLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDPPPPVGSTSPF-LKPAVFKSRRKAKSQPKGEKGWYLGPAHNH 234

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BLAST of mRNA_H-paniculata_contig52498.12620.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.100e-12
Identity = 46/124 (37.10%), Postives = 64/124 (51.61%), Query Frame = 0

Query:    6 ISHELKPPDTPQYNGVAERRLGLLCEKTIAL-MQDQTEGG------SGKLWAEAMTYAYDITTMSCKSSIEGNVTPYEKWYGNTAPLEHLQPFGVVGYMRKIITEHKMAPRGKKCIMLGISHNH 122
            I  E  P  +PQYNGVAER LGL+ E  +A  +Q +   G      + KLWAEAM +A +    +  S+   +++PYE WYG   P     PF    Y R      K+ P+G+ C  +G S +H
Sbjct:  181 IKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY-PFSKPAYCRWQ-RPSKLLPKGESCFYVGPSRDH 302

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BLAST of mRNA_H-paniculata_contig52498.12620.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.970e-11
Identity = 46/124 (37.10%), Postives = 64/124 (51.61%), Query Frame = 0

Query:    6 ISHELKPPDTPQYNGVAERRLGLLCEKTIAL-MQDQTEGG------SGKLWAEAMTYAYDITTMSCKSSIEGNVTPYEKWYGNTAPLEHLQPFGVVGYMRKIITEHKMAPRGKKCIMLGISHNH 122
            I  E  P  +PQYNGVAER LGL+ E  +A  +Q +   G      + KLWAEAM +A +    +  S+   +++PYE WYG   P     PF    Y R      K+ P+G+ C  +G S +H
Sbjct:  401 IKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY-PFLKPAYCRWQ-RPTKLLPKGESCFYVGPSRDH 522

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BLAST of mRNA_H-paniculata_contig52498.12620.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.070e-11
Identity = 46/124 (37.10%), Postives = 64/124 (51.61%), Query Frame = 0

Query:    6 ISHELKPPDTPQYNGVAERRLGLLCEKTIAL-MQDQTEGG------SGKLWAEAMTYAYDITTMSCKSSIEGNVTPYEKWYGNTAPLEHLQPFGVVGYMRKIITEHKMAPRGKKCIMLGISHNH 122
            I  E  P  +PQYNGVAER LGL+ E  +A  +Q +   G      + KLWAEAM +A +    +  S+   +++PYE WYG   P     PF    Y R      K+ P+G+ C  +G S +H
Sbjct:   67 IKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY-PFLKPAYCRWQ-RPTKLLPKGESCFYVGPSRDH 188

[Close]

BLAST of mRNA_H-paniculata_contig52498.12620.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.110e-11
Identity = 46/124 (37.10%), Postives = 64/124 (51.61%), Query Frame = 0

Query:    6 ISHELKPPDTPQYNGVAERRLGLLCEKTIAL-MQDQTEGG------SGKLWAEAMTYAYDITTMSCKSSIEGNVTPYEKWYGNTAPLEHLQPFGVVGYMRKIITEHKMAPRGKKCIMLGISHNH 122
            I  E  P  +PQYNGVAER LGL+ E  +A  +Q +   G      + KLWAEAM +A +    +  S+   +++PYE WYG   P     PF    Y R      K+ P+G+ C  +G S +H
Sbjct:  334 IKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY-PFLKPAYCRWQ-RPTKLLPKGESCFYVGPSRDH 455

[Close]

BLAST of mRNA_H-paniculata_contig52498.12620.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.130e-11
Identity = 46/124 (37.10%), Postives = 63/124 (50.81%), Query Frame = 0

Query:    6 ISHELKPPDTPQYNGVAERRLGLLCEKTIAL-MQDQTEGG------SGKLWAEAMTYAYDITTMSCKSSIEGNVTPYEKWYGNTAPLEHLQPFGVVGYMRKIITEHKMAPRGKKCIMLGISHNH 122
            I  E  P  +PQYNGVAER LGL+ E  +A  +Q +   G      + KLWAEAM +A +    +  S+   + +PYE WYG   P     PF    Y  K     K+ P+G+ C  +G S +H
Sbjct:  417 IKQEFTPAHSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY-PFLKPAYC-KWQRPSKLFPKGESCFYVGPSRDH 538

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BLAST of mRNA_H-paniculata_contig52498.12620.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.840e-11
Identity = 46/124 (37.10%), Postives = 63/124 (50.81%), Query Frame = 0

Query:    6 ISHELKPPDTPQYNGVAERRLGLLCEKTIAL-MQDQTEGG------SGKLWAEAMTYAYDITTMSCKSSIEGNVTPYEKWYGNTAPLEHLQPFGVVGYMRKIITEHKMAPRGKKCIMLGISHNH 122
            I  E  P  +PQYNGVAER LGL+ E  +A  +Q +   G      + KLWAEAM +A +    +  S+   ++ PYE WYG   P     PF    Y R      K+ P+G+ C  +G S +H
Sbjct:  279 IKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGEPRPARPY-PFLKPAYCRWQ-RPTKLLPKGESCFYVGPSRDH 400

[Close]

BLAST of mRNA_H-paniculata_contig52498.12620.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.930e-11
Identity = 46/124 (37.10%), Postives = 63/124 (50.81%), Query Frame = 0

Query:    6 ISHELKPPDTPQYNGVAERRLGLLCEKTIAL-MQDQTEGG------SGKLWAEAMTYAYDITTMSCKSSIEGNVTPYEKWYGNTAPLEHLQPFGVVGYMRKIITEHKMAPRGKKCIMLGISHNH 122
            I  E  P  +PQYNGVAER LGL+ E  +A  +Q +   G      + KLWAEAM +A +    +  S+   + +PYE WYG   P     PF    Y R      K+ P+G+ C  +G S +H
Sbjct:  813 IKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRPARPY-PFLKPAYCRWQ-RPSKLLPKGESCFYVGPSRDH 934

[Close]

BLAST of mRNA_H-paniculata_contig52498.12620.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.950e-11
Identity = 46/124 (37.10%), Postives = 63/124 (50.81%), Query Frame = 0

Query:    6 ISHELKPPDTPQYNGVAERRLGLLCEKTIAL-MQDQTEGG------SGKLWAEAMTYAYDITTMSCKSSIEGNVTPYEKWYGNTAPLEHLQPFGVVGYMRKIITEHKMAPRGKKCIMLGISHNH 122
            I  E  P  +PQYNGVAER LGL+ E  +A  +Q +   G      + KLWAEAM +A +    +  S+   + +PYE WYG   P     PF    Y R      K+ P+G+ C  +G S +H
Sbjct:  520 IKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRPARPY-PFLKPAYCRWQ-RPSKLLPKGESCFYVGPSRDH 641

[Close]

BLAST of mRNA_H-paniculata_contig52498.12620.1 vs. uniprot
Match: A0A6H5JSK5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSK5_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 5.230e-11
Identity = 42/117 (35.90%), Postives = 58/117 (49.57%), Query Frame = 0

Query:    6 ISHELKPPDTPQYNGVAERRLGLLCEKTIALMQDQT----EGGS-GKLWAEAMTYAYDITTMSCKSSIEGNVTPYEKWYGNTAPLEHLQPFGVVGYMRKIITEHKMAPRGKKCIMLG 117
            I  E  P  +P+YNGVAER LGL+ +  +A          E  S   LWAEA  +A +    +  +S     +PYE W+G+  P E   PF +   + K+   HK  P+ KKC  LG
Sbjct:   25 IKQEFTPAYSPEYNGVAERALGLIKDAALAARIQAPILYPEAPSYPSLWAEATAWACNALNCTSTTSNPDKKSPYEMWHGHPPPPEATYPF-LKPAVYKVKRTHKSEPKAKKCFYLG 140

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig52498.12620.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig52498.12620.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K293_9PHAE	6.740e-13	35.20	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KVR5_9PHAE	3.100e-12	37.10	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JV76_9PHAE	1.970e-11	37.10	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5KKK1_9PHAE	2.070e-11	37.10	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5JRL9_9PHAE	2.110e-11	37.10	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5JB16_9PHAE	2.130e-11	37.10	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5L3Y0_9PHAE	3.840e-11	37.10	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JBA7_9PHAE	3.930e-11	37.10	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KZH7_9PHAE	3.950e-11	37.10	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JSK5_9PHAE	5.230e-11	35.90	Integrase catalytic domain-containing protein n=1 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..105 e-value: 2.1E-7 score: 32.3
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..82 score: 10.109
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 2..88

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig52498	contig	H-paniculata_contig52498:853..1218 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig52498.12620.1	mRNA_H-paniculata_contig52498.12620.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig52498 853..1218 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig52498.12620.1 ID=prot_H-paniculata_contig52498.12620.1|Name=mRNA_H-paniculata_contig52498.12620.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
LDQHGISHELKPPDTPQYNGVAERRLGLLCEKTIALMQDQTEGGSGKLWA
EAMTYAYDITTMSCKSSIEGNVTPYEKWYGNTAPLEHLQPFGVVGYMRKI
ITEHKMAPRGKKCIMLGISHNH

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR001584	Integrase_cat-core
IPR012337	RNaseH-like_sf