mRNA_H-paniculata_contig52498.12620.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig52498.12620.1
Unique NamemRNA_H-paniculata_contig52498.12620.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig52498.12620.1 vs. uniprot
Match: A0A6H5K293_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K293_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 6.740e-13
Identity = 44/125 (35.20%), Postives = 66/125 (52.80%), Query Frame = 1 
Query:    7 QHGISHELKPPDTPQYNGVAERRLGLLCEKTIALMQDQTE-----GGSGKLWAEAMTYAYDITTMSCKSSIEGNVTPYEKWYGNTAPLEHLQPFGVVGYMRKIITEHKMAPRGKKCIMLGISHNH 366
            +HGI  E  PP+TP+YNGVAER LGL+ +  +A     T+         +LWAEA++ A      +   S EG+ + YE ++    P+    PF +   + K   + K  P+G+K   LG +HNH
Sbjct:  111 RHGIKQEFTPPNTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPRLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDPPPPVGSTSPF-LKPAVFKSRRKAKSQPKGEKGWYLGPAHNH 234
[Close]
BLAST of mRNA_H-paniculata_contig52498.12620.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.100e-12
Identity = 46/124 (37.10%), Postives = 64/124 (51.61%), Query Frame = 1 
Query:   16 ISHELKPPDTPQYNGVAERRLGLLCEKTIAL-MQDQTEGG------SGKLWAEAMTYAYDITTMSCKSSIEGNVTPYEKWYGNTAPLEHLQPFGVVGYMRKIITEHKMAPRGKKCIMLGISHNH 366
            I  E  P  +PQYNGVAER LGL+ E  +A  +Q +   G      + KLWAEAM +A +    +  S+   +++PYE WYG   P     PF    Y R      K+ P+G+ C  +G S +H
Sbjct:  181 IKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY-PFSKPAYCRWQ-RPSKLLPKGESCFYVGPSRDH 302
[Close]
BLAST of mRNA_H-paniculata_contig52498.12620.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.970e-11
Identity = 46/124 (37.10%), Postives = 64/124 (51.61%), Query Frame = 1 
Query:   16 ISHELKPPDTPQYNGVAERRLGLLCEKTIAL-MQDQTEGG------SGKLWAEAMTYAYDITTMSCKSSIEGNVTPYEKWYGNTAPLEHLQPFGVVGYMRKIITEHKMAPRGKKCIMLGISHNH 366
            I  E  P  +PQYNGVAER LGL+ E  +A  +Q +   G      + KLWAEAM +A +    +  S+   +++PYE WYG   P     PF    Y R      K+ P+G+ C  +G S +H
Sbjct:  401 IKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY-PFLKPAYCRWQ-RPTKLLPKGESCFYVGPSRDH 522
[Close]
BLAST of mRNA_H-paniculata_contig52498.12620.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.070e-11
Identity = 46/124 (37.10%), Postives = 64/124 (51.61%), Query Frame = 1 
Query:   16 ISHELKPPDTPQYNGVAERRLGLLCEKTIAL-MQDQTEGG------SGKLWAEAMTYAYDITTMSCKSSIEGNVTPYEKWYGNTAPLEHLQPFGVVGYMRKIITEHKMAPRGKKCIMLGISHNH 366
            I  E  P  +PQYNGVAER LGL+ E  +A  +Q +   G      + KLWAEAM +A +    +  S+   +++PYE WYG   P     PF    Y R      K+ P+G+ C  +G S +H
Sbjct:   67 IKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY-PFLKPAYCRWQ-RPTKLLPKGESCFYVGPSRDH 188
[Close]
BLAST of mRNA_H-paniculata_contig52498.12620.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.110e-11
Identity = 46/124 (37.10%), Postives = 64/124 (51.61%), Query Frame = 1 
Query:   16 ISHELKPPDTPQYNGVAERRLGLLCEKTIAL-MQDQTEGG------SGKLWAEAMTYAYDITTMSCKSSIEGNVTPYEKWYGNTAPLEHLQPFGVVGYMRKIITEHKMAPRGKKCIMLGISHNH 366
            I  E  P  +PQYNGVAER LGL+ E  +A  +Q +   G      + KLWAEAM +A +    +  S+   +++PYE WYG   P     PF    Y R      K+ P+G+ C  +G S +H
Sbjct:  334 IKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY-PFLKPAYCRWQ-RPTKLLPKGESCFYVGPSRDH 455
[Close]
BLAST of mRNA_H-paniculata_contig52498.12620.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.130e-11
Identity = 46/124 (37.10%), Postives = 63/124 (50.81%), Query Frame = 1 
Query:   16 ISHELKPPDTPQYNGVAERRLGLLCEKTIAL-MQDQTEGG------SGKLWAEAMTYAYDITTMSCKSSIEGNVTPYEKWYGNTAPLEHLQPFGVVGYMRKIITEHKMAPRGKKCIMLGISHNH 366
            I  E  P  +PQYNGVAER LGL+ E  +A  +Q +   G      + KLWAEAM +A +    +  S+   + +PYE WYG   P     PF    Y  K     K+ P+G+ C  +G S +H
Sbjct:  417 IKQEFTPAHSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY-PFLKPAYC-KWQRPSKLFPKGESCFYVGPSRDH 538
[Close]
BLAST of mRNA_H-paniculata_contig52498.12620.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.840e-11
Identity = 46/124 (37.10%), Postives = 63/124 (50.81%), Query Frame = 1 
Query:   16 ISHELKPPDTPQYNGVAERRLGLLCEKTIAL-MQDQTEGG------SGKLWAEAMTYAYDITTMSCKSSIEGNVTPYEKWYGNTAPLEHLQPFGVVGYMRKIITEHKMAPRGKKCIMLGISHNH 366
            I  E  P  +PQYNGVAER LGL+ E  +A  +Q +   G      + KLWAEAM +A +    +  S+   ++ PYE WYG   P     PF    Y R      K+ P+G+ C  +G S +H
Sbjct:  279 IKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGEPRPARPY-PFLKPAYCRWQ-RPTKLLPKGESCFYVGPSRDH 400
[Close]
BLAST of mRNA_H-paniculata_contig52498.12620.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.930e-11
Identity = 46/124 (37.10%), Postives = 63/124 (50.81%), Query Frame = 1 
Query:   16 ISHELKPPDTPQYNGVAERRLGLLCEKTIAL-MQDQTEGG------SGKLWAEAMTYAYDITTMSCKSSIEGNVTPYEKWYGNTAPLEHLQPFGVVGYMRKIITEHKMAPRGKKCIMLGISHNH 366
            I  E  P  +PQYNGVAER LGL+ E  +A  +Q +   G      + KLWAEAM +A +    +  S+   + +PYE WYG   P     PF    Y R      K+ P+G+ C  +G S +H
Sbjct:  813 IKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRPARPY-PFLKPAYCRWQ-RPSKLLPKGESCFYVGPSRDH 934
[Close]
BLAST of mRNA_H-paniculata_contig52498.12620.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.950e-11
Identity = 46/124 (37.10%), Postives = 63/124 (50.81%), Query Frame = 1 
Query:   16 ISHELKPPDTPQYNGVAERRLGLLCEKTIAL-MQDQTEGG------SGKLWAEAMTYAYDITTMSCKSSIEGNVTPYEKWYGNTAPLEHLQPFGVVGYMRKIITEHKMAPRGKKCIMLGISHNH 366
            I  E  P  +PQYNGVAER LGL+ E  +A  +Q +   G      + KLWAEAM +A +    +  S+   + +PYE WYG   P     PF    Y R      K+ P+G+ C  +G S +H
Sbjct:  520 IKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRPARPY-PFLKPAYCRWQ-RPSKLLPKGESCFYVGPSRDH 641
[Close]
BLAST of mRNA_H-paniculata_contig52498.12620.1 vs. uniprot
Match: A0A6H5JSK5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSK5_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 5.230e-11
Identity = 42/117 (35.90%), Postives = 58/117 (49.57%), Query Frame = 1 
Query:   16 ISHELKPPDTPQYNGVAERRLGLLCEKTIALMQDQT----EGGS-GKLWAEAMTYAYDITTMSCKSSIEGNVTPYEKWYGNTAPLEHLQPFGVVGYMRKIITEHKMAPRGKKCIMLG 351
            I  E  P  +P+YNGVAER LGL+ +  +A          E  S   LWAEA  +A +    +  +S     +PYE W+G+  P E   PF +   + K+   HK  P+ KKC  LG
Sbjct:   25 IKQEFTPAYSPEYNGVAERALGLIKDAALAARIQAPILYPEAPSYPSLWAEATAWACNALNCTSTTSNPDKKSPYEMWHGHPPPPEATYPF-LKPAVYKVKRTHKSEPKAKKCFYLG 140
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig52498.12620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K293_9PHAE6.740e-1335.20Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KVR5_9PHAE3.100e-1237.10Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JV76_9PHAE1.970e-1137.10Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KKK1_9PHAE2.070e-1137.10Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE2.110e-1137.10Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JB16_9PHAE2.130e-1137.10Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L3Y0_9PHAE3.840e-1137.10Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JBA7_9PHAE3.930e-1137.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE3.950e-1137.10Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSK5_9PHAE5.230e-1135.90Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig52498contigH-paniculata_contig52498:853..1218 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score75.5
Seed ortholog evalue1.9e-11
Seed eggNOG ortholog364733.XP_007787345.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs20FR9@147545,38DPC@33154,3NUZ7@4751,3QNZW@4890,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelEurotiomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size366
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930524.2112272-CDS-H-paniculata_contig52498:852..12181622930524.2112272-CDS-H-paniculata_contig52498:852..1218Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52498 853..1218 -
1691481331.226976-CDS-H-paniculata_contig52498:852..12181691481331.226976-CDS-H-paniculata_contig52498:852..1218Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52498 853..1218 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig52498.12620.1prot_H-paniculata_contig52498.12620.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig52498 853..1218 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig52498.12620.1

>prot_H-paniculata_contig52498.12620.1 ID=prot_H-paniculata_contig52498.12620.1|Name=mRNA_H-paniculata_contig52498.12620.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
LDQHGISHELKPPDTPQYNGVAERRLGLLCEKTIALMQDQTEGGSGKLWA
EAMTYAYDITTMSCKSSIEGNVTPYEKWYGNTAPLEHLQPFGVVGYMRKI
ITEHKMAPRGKKCIMLGISHNH
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mRNA from alignment at H-paniculata_contig52498:853..1218-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig52498.12620.1 ID=mRNA_H-paniculata_contig52498.12620.1|Name=mRNA_H-paniculata_contig52498.12620.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=366bp|location=Sequence derived from alignment at H-paniculata_contig52498:853..1218- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTGACCAGCACGGCATTAGTCACGAGCTCAAACCCCCGGACACGCCGCA
ATACAATGGCGTTGCCGAAAGGCGACTGGGTCTACTCTGCGAGAAAACGA
TCGCATTGATGCAGGATCAGACGGAGGGGGGCAGCGGGAAACTATGGGCG
GAGGCGATGACCTACGCCTACGACATCACCACTATGAGCTGCAAATCGTC
CATCGAAGGAAATGTTACCCCGTACGAGAAGTGGTACGGGAATACAGCGC
CGCTGGAACACCTACAACCTTTTGGGGTGGTGGGCTACATGCGCAAGATC
ATCACGGAACACAAGATGGCGCCACGAGGAAAGAAGTGCATCATGCTGGG
TATTTCCCACAACCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig52498:853..1218-

>mRNA_H-paniculata_contig52498.12620.1 ID=mRNA_H-paniculata_contig52498.12620.1|Name=mRNA_H-paniculata_contig52498.12620.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig52498:853..1218- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTGACCAGCACGGCATTAGTCACGAGCTCAAACCCCCGGACACGCCGCA
ATACAATGGCGTTGCCGAAAGGCGACTGGGTCTACTCTGCGAGAAAACGA
TCGCATTGATGCAGGATCAGACGGAGGGGGGCAGCGGGAAACTATGGGCG
GAGGCGATGACCTACGCCTACGACATCACCACTATGAGCTGCAAATCGTC
CATCGAAGGAAATGTTACCCCGTACGAGAAGTGGTACGGGAATACAGCGC
CGCTGGAACACCTACAACCTTTTGGGGTGGTGGGCTACATGCGCAAGATC
ATCACGGAACACAAGATGGCGCCACGAGGAAAGAAGTGCATCATGCTGGG
TATTTCCCACAACCACCTTGACCAGCACGGCATTAGTCACGAGCTCAAAC
CCCCGGACACGCCGCAATACAATGGCGTTGCCGAAAGGCGACTGGGTCTA
CTCTGCGAGAAAACGATCGCATTGATGCAGGATCAGACGGAGGGGGGCAG
CGGGAAACTATGGGCGGAGGCGATGACCTACGCCTACGACATCACCACTA
TGAGCTGCAAATCGTCCATCGAAGGAAATGTTACCCCGTACGAGAAGTGG
TACGGGAATACAGCGCCGCTGGAACACCTACAACCTTTTGGGGTGGTGGG
CTACATGCGCAAGATCATCACGGAACACAAGATGGCGCCACGAGGAAAGA
AGTGCATCATGCTGGGTATTTCCCACAACCAC
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