prot_H-paniculata_contig52221.12590.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig52221.12590.1
Unique Nameprot_H-paniculata_contig52221.12590.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length197
Homology
BLAST of mRNA_H-paniculata_contig52221.12590.1 vs. uniprot
Match: C1IJC5_HORVU (Polyprotein n=1 Tax=Hordeum vulgare TaxID=4513 RepID=C1IJC5_HORVU)

HSP 1 Score: 57.0 bits (136), Expect = 4.490e-6
Identity = 48/160 (30.00%), Postives = 74/160 (46.25%), Query Frame = 0
Query:   15 GLCWVCGSSEHIARRCPKRHHDTNEGEVALLATIRGPKAM-----TAVTDD--RQTTDSPAVTREKEH---------------WNSDTGATDHMASDETVFEDYTPALPGTMCEIANETFVPVEGWGRLVLRVSQPGGKSRVAVLNRVAHVPELGRNLIS 152
            G C  CG S+H  R C K+  D   G+  L A      A+     T +TD+  R T+ +  V   +E                W+ DTGA++HM  D TVF +    +  T+    + + V +EG G +V      GG+ RV  L++V ++P L  ++IS
Sbjct:  294 GNCRYCGISDHWVRECRKKMKDEGTGKAHLAAAEDEDPALLMAQVTPLTDEPNRDTSGNQLVHLHEESAEVNLGAAGDAKEPTWHLDTGASNHMTGDPTVFSELDRHVADTV-RFGDRSVVEIEGRGTVVFVAH--GGRHRV--LSKVYYIPRLRTSIIS 448          
BLAST of mRNA_H-paniculata_contig52221.12590.1 vs. uniprot
Match: A0A2N9EE40_FAGSY (Uncharacterized protein n=3 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EE40_FAGSY)

HSP 1 Score: 55.1 bits (131), Expect = 1.960e-5
Identity = 46/150 (30.67%), Postives = 73/150 (48.67%), Query Frame = 0
Query:   17 CWVCGSSEHIARRCPKRHHDTNEGEVALLATIRGPKAMTAVTDDRQTTDSPAVTREKEHWNSDTGATDHMASDETVFEDYTPALPGTMCEIANETFVPVEGWGRLVLRVSQPGGKSRVAVLNRVAHVPELGRNLISTHRATDTSGKSFIY 166
            CW CG + HI + C +     NE + A + T     A+        + DSP      E W  D+GA+ H  +   + ++Y     G +  +A++  + V G G +  R++ P G   V +L +V HVPEL RNLIS  +  DT G + ++
Sbjct:  236 CWNCGKTGHIRKNCWELKKK-NENDSANVVTEEVHDALLL------SVDSPI-----ESWVLDSGASFHTTAHREIIQNYVAGDFGKVY-LADDEALDVVGMGDV--RITLPNGS--VWLLQKVRHVPELKRNLISVGQL-DTEGHAILF 367          
BLAST of mRNA_H-paniculata_contig52221.12590.1 vs. uniprot
Match: A0A2N9G6Q3_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9G6Q3_FAGSY)

HSP 1 Score: 55.1 bits (131), Expect = 2.010e-5
Identity = 46/150 (30.67%), Postives = 73/150 (48.67%), Query Frame = 0
Query:   17 CWVCGSSEHIARRCPKRHHDTNEGEVALLATIRGPKAMTAVTDDRQTTDSPAVTREKEHWNSDTGATDHMASDETVFEDYTPALPGTMCEIANETFVPVEGWGRLVLRVSQPGGKSRVAVLNRVAHVPELGRNLISTHRATDTSGKSFIY 166
            CW CG + HI + C +     NE + A + T     A+        + DSP      E W  D+GA+ H  +   + ++Y     G +  +A++  + V G G +  R++ P G   V +L +V HVPEL RNLIS  +  DT G + ++
Sbjct:  236 CWNCGKTGHIRKNCWELKKK-NENDSANVVTEEVHDALLL------SVDSPI-----ESWVLDSGASFHTTAHREIIQNYVAGDFGKVY-LADDEALDVVGMGDV--RITLPNGS--VWLLQKVRHVPELKRNLISVGQL-DTEGHAILF 367          
BLAST of mRNA_H-paniculata_contig52221.12590.1 vs. uniprot
Match: A0A2N9GVZ5_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GVZ5_FAGSY)

HSP 1 Score: 55.1 bits (131), Expect = 2.020e-5
Identity = 46/150 (30.67%), Postives = 73/150 (48.67%), Query Frame = 0
Query:   17 CWVCGSSEHIARRCPKRHHDTNEGEVALLATIRGPKAMTAVTDDRQTTDSPAVTREKEHWNSDTGATDHMASDETVFEDYTPALPGTMCEIANETFVPVEGWGRLVLRVSQPGGKSRVAVLNRVAHVPELGRNLISTHRATDTSGKSFIY 166
            CW CG + HI + C +     NE + A + T     A+        + DSP      E W  D+GA+ H  +   + ++Y     G +  +A++  + V G G +  R++ P G   V +L +V HVPEL RNLIS  +  DT G + ++
Sbjct:  236 CWNCGKTGHIRKNCWELKKK-NENDSANVVTEEVHDALLL------SVDSPI-----ESWVLDSGASFHTTAHREIIQNYVAGDFGKVY-LADDEALDVVGMGDV--RITLPNGS--VWLLQKVRHVPELKRNLISVGQL-DTEGHAILF 367          
BLAST of mRNA_H-paniculata_contig52221.12590.1 vs. uniprot
Match: A0A2N9HHD8_FAGSY (Uncharacterized protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HHD8_FAGSY)

HSP 1 Score: 55.1 bits (131), Expect = 2.020e-5
Identity = 46/150 (30.67%), Postives = 73/150 (48.67%), Query Frame = 0
Query:   17 CWVCGSSEHIARRCPKRHHDTNEGEVALLATIRGPKAMTAVTDDRQTTDSPAVTREKEHWNSDTGATDHMASDETVFEDYTPALPGTMCEIANETFVPVEGWGRLVLRVSQPGGKSRVAVLNRVAHVPELGRNLISTHRATDTSGKSFIY 166
            CW CG + HI + C +     NE + A + T     A+        + DSP      E W  D+GA+ H  +   + ++Y     G +  +A++  + V G G +  R++ P G   V +L +V HVPEL RNLIS  +  DT G + ++
Sbjct:  217 CWNCGKTGHIRKNCWELKKK-NENDSANVVTEEVHDALLL------SVDSPI-----ESWVLDSGASFHTTAHREIIQNYVAGDFGKVY-LADDEALDVVGMGDV--RITLPNGS--VWLLQKVRHVPELKRNLISVGQL-DTEGHAILF 348          
BLAST of mRNA_H-paniculata_contig52221.12590.1 vs. uniprot
Match: A0A438D407_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438D407_VITVI)

HSP 1 Score: 55.1 bits (131), Expect = 2.020e-5
Identity = 43/144 (29.86%), Postives = 69/144 (47.92%), Query Frame = 0
Query:   17 CWVCGSSEHIARRC--PKRHHDTNEGEVALLATIRGPKAMTAVTDDRQTTDSPAVTREKEHWNSDTGATDHMASDETVFEDYTPALPGTMCEIANETFVPVEGWGRLVLRVSQPGGKSRVAVLNRVAHVPELGRNLISTHRATD 158
            CW CG + H  R+C  PK+ ++ +                 AVT++ Q     AV    + W  D+GA+ H  S   + ++Y     G +  +A+ + + V G G +  R+S P G   V +L +V H+P+L RNLIS  +  D
Sbjct:  166 CWNCGKTGHFKRQCKSPKKKNEDDSAN--------------AVTEEVQDALLLAVDSPLDDWVLDSGASFHTTSHREIIQNYVAGDFGKVY-LADGSALDVVGLGDV--RISLPNGS--VWLLEKVRHIPDLRRNLISVGQLDD 290          
BLAST of mRNA_H-paniculata_contig52221.12590.1 vs. uniprot
Match: A0A2N9J3Y8_FAGSY (Uncharacterized protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9J3Y8_FAGSY)

HSP 1 Score: 55.1 bits (131), Expect = 2.030e-5
Identity = 46/150 (30.67%), Postives = 73/150 (48.67%), Query Frame = 0
Query:   17 CWVCGSSEHIARRCPKRHHDTNEGEVALLATIRGPKAMTAVTDDRQTTDSPAVTREKEHWNSDTGATDHMASDETVFEDYTPALPGTMCEIANETFVPVEGWGRLVLRVSQPGGKSRVAVLNRVAHVPELGRNLISTHRATDTSGKSFIY 166
            CW CG + HI + C +     NE + A + T     A+        + DSP      E W  D+GA+ H  +   + ++Y     G +  +A++  + V G G +  R++ P G   V +L +V HVPEL RNLIS  +  DT G + ++
Sbjct:  236 CWNCGKTGHIRKNCWELKKK-NENDSANVVTEEVHDALLL------SVDSPI-----ESWVLDSGASFHTTAHREIIQNYVAGDFGKVY-LADDEALDVVGMGDV--RITLPNGS--VWLLQKVRHVPELKRNLISVGQL-DTEGHAILF 367          
BLAST of mRNA_H-paniculata_contig52221.12590.1 vs. uniprot
Match: A0A438H787_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438H787_VITVI)

HSP 1 Score: 55.1 bits (131), Expect = 2.030e-5
Identity = 43/144 (29.86%), Postives = 69/144 (47.92%), Query Frame = 0
Query:   17 CWVCGSSEHIARRC--PKRHHDTNEGEVALLATIRGPKAMTAVTDDRQTTDSPAVTREKEHWNSDTGATDHMASDETVFEDYTPALPGTMCEIANETFVPVEGWGRLVLRVSQPGGKSRVAVLNRVAHVPELGRNLISTHRATD 158
            CW CG + H  R+C  PK+ ++ +                 AVT++ Q     AV    + W  D+GA+ H  S   + ++Y     G +  +A+ + + V G G +  R+S P G   V +L +V H+P+L RNLIS  +  D
Sbjct:  239 CWNCGKTGHFKRQCKSPKKKNEDDSAN--------------AVTEEVQDALLLAVDSPLDDWVLDSGASFHTTSHREIIQNYVAGDFGKVY-LADGSALDVVGLGDV--RISLPNGS--VWLLEKVQHIPDLRRNLISVGQLDD 363          
BLAST of mRNA_H-paniculata_contig52221.12590.1 vs. uniprot
Match: A0A2N9IKQ5_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IKQ5_FAGSY)

HSP 1 Score: 55.1 bits (131), Expect = 2.040e-5
Identity = 46/150 (30.67%), Postives = 73/150 (48.67%), Query Frame = 0
Query:   17 CWVCGSSEHIARRCPKRHHDTNEGEVALLATIRGPKAMTAVTDDRQTTDSPAVTREKEHWNSDTGATDHMASDETVFEDYTPALPGTMCEIANETFVPVEGWGRLVLRVSQPGGKSRVAVLNRVAHVPELGRNLISTHRATDTSGKSFIY 166
            CW CG + HI + C +     NE + A + T     A+        + DSP      E W  D+GA+ H  +   + ++Y     G +  +A++  + V G G +  R++ P G   V +L +V HVPEL RNLIS  +  DT G + ++
Sbjct:  196 CWNCGKTGHIRKNCWELKKK-NENDSANVVTEEVHDALLL------SVDSPI-----ESWVLDSGASFHTTAHREIIQNYVAGDFGKVY-LADDEALDVVGMGDV--RITLPNGS--VWLLQKVRHVPELKRNLISVGQL-DTEGHAILF 327          
BLAST of mRNA_H-paniculata_contig52221.12590.1 vs. uniprot
Match: A0A2N9JBD5_FAGSY (Uncharacterized protein n=3 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9JBD5_FAGSY)

HSP 1 Score: 55.1 bits (131), Expect = 2.070e-5
Identity = 46/150 (30.67%), Postives = 73/150 (48.67%), Query Frame = 0
Query:   17 CWVCGSSEHIARRCPKRHHDTNEGEVALLATIRGPKAMTAVTDDRQTTDSPAVTREKEHWNSDTGATDHMASDETVFEDYTPALPGTMCEIANETFVPVEGWGRLVLRVSQPGGKSRVAVLNRVAHVPELGRNLISTHRATDTSGKSFIY 166
            CW CG + HI + C +     NE + A + T     A+        + DSP      E W  D+GA+ H  +   + ++Y     G +  +A++  + V G G +  R++ P G   V +L +V HVPEL RNLIS  +  DT G + ++
Sbjct:  236 CWNCGKTGHIRKNCWELKKK-NENDSANVVTEEVHDALLL------SVDSPI-----ESWVLDSGASFHTTAHREIIQNYVAGDFGKVY-LADDEALDVVGMGDV--RITLPNGS--VWLLQKVRHVPELKRNLISVGQL-DTEGHAILF 367          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig52221.12590.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
C1IJC5_HORVU4.490e-630.00Polyprotein n=1 Tax=Hordeum vulgare TaxID=4513 Rep... [more]
A0A2N9EE40_FAGSY1.960e-530.67Uncharacterized protein n=3 Tax=Fagus sylvatica Ta... [more]
A0A2N9G6Q3_FAGSY2.010e-530.67Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9GVZ5_FAGSY2.020e-530.67Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9HHD8_FAGSY2.020e-530.67Uncharacterized protein n=2 Tax=Fagus sylvatica Ta... [more]
A0A438D407_VITVI2.020e-529.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9J3Y8_FAGSY2.030e-530.67Uncharacterized protein n=2 Tax=Fagus sylvatica Ta... [more]
A0A438H787_VITVI2.030e-529.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9IKQ5_FAGSY2.040e-530.67Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9JBD5_FAGSY2.070e-530.67Uncharacterized protein n=3 Tax=Fagus sylvatica Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 16..32
e-value: 0.0049
score: 25.5
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 17..32
e-value: 5.0E-4
score: 20.0
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 17..32
score: 8.944
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 4..38

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig52221contigH-paniculata_contig52221:7..597 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig52221.12590.1mRNA_H-paniculata_contig52221.12590.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig52221 7..597 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig52221.12590.1 ID=prot_H-paniculata_contig52221.12590.1|Name=mRNA_H-paniculata_contig52221.12590.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=197bp
GAKGDDQKKTKKDRGLCWVCGSSEHIARRCPKRHHDTNEGEVALLATIRG
PKAMTAVTDDRQTTDSPAVTREKEHWNSDTGATDHMASDETVFEDYTPAL
PGTMCEIANETFVPVEGWGRLVLRVSQPGGKSRVAVLNRVAHVPELGRNL
ISTHRATDTSGKSFIYSANKASLGLGEEQSLIFNVPATSGLYEVEAV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf