mRNA_H-paniculata_contig52221.12590.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig52221.12590.1
Unique NamemRNA_H-paniculata_contig52221.12590.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig52221.12590.1 vs. uniprot
Match: C1IJC5_HORVU (Polyprotein n=1 Tax=Hordeum vulgare TaxID=4513 RepID=C1IJC5_HORVU)

HSP 1 Score: 57.0 bits (136), Expect = 4.490e-6
Identity = 48/160 (30.00%), Postives = 74/160 (46.25%), Query Frame = 1 
Query:   43 GLCWVCGSSEHIARRCPKRHHDTNEGEVALLATIRGPKAM-----TAVTDD--RQTTDSPAVTREKEH---------------WNSDTGATDHMASDETVFEDYTPALPGTMCEIANETFVPVEGWGRLVLRVSQPGGKSRVAVLNRVAHVPELGRNLIS 456
            G C  CG S+H  R C K+  D   G+  L A      A+     T +TD+  R T+ +  V   +E                W+ DTGA++HM  D TVF +    +  T+    + + V +EG G +V      GG+ RV  L++V ++P L  ++IS
Sbjct:  294 GNCRYCGISDHWVRECRKKMKDEGTGKAHLAAAEDEDPALLMAQVTPLTDEPNRDTSGNQLVHLHEESAEVNLGAAGDAKEPTWHLDTGASNHMTGDPTVFSELDRHVADTV-RFGDRSVVEIEGRGTVVFVAH--GGRHRV--LSKVYYIPRLRTSIIS 448
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BLAST of mRNA_H-paniculata_contig52221.12590.1 vs. uniprot
Match: A0A2N9EE40_FAGSY (Uncharacterized protein n=3 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EE40_FAGSY)

HSP 1 Score: 55.1 bits (131), Expect = 1.960e-5
Identity = 46/150 (30.67%), Postives = 73/150 (48.67%), Query Frame = 1 
Query:   49 CWVCGSSEHIARRCPKRHHDTNEGEVALLATIRGPKAMTAVTDDRQTTDSPAVTREKEHWNSDTGATDHMASDETVFEDYTPALPGTMCEIANETFVPVEGWGRLVLRVSQPGGKSRVAVLNRVAHVPELGRNLISTHRATDTSGKSFIY 498
            CW CG + HI + C +     NE + A + T     A+        + DSP      E W  D+GA+ H  +   + ++Y     G +  +A++  + V G G +  R++ P G   V +L +V HVPEL RNLIS  +  DT G + ++
Sbjct:  236 CWNCGKTGHIRKNCWELKKK-NENDSANVVTEEVHDALLL------SVDSPI-----ESWVLDSGASFHTTAHREIIQNYVAGDFGKVY-LADDEALDVVGMGDV--RITLPNGS--VWLLQKVRHVPELKRNLISVGQL-DTEGHAILF 367
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BLAST of mRNA_H-paniculata_contig52221.12590.1 vs. uniprot
Match: A0A2N9G6Q3_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9G6Q3_FAGSY)

HSP 1 Score: 55.1 bits (131), Expect = 2.010e-5
Identity = 46/150 (30.67%), Postives = 73/150 (48.67%), Query Frame = 1 
Query:   49 CWVCGSSEHIARRCPKRHHDTNEGEVALLATIRGPKAMTAVTDDRQTTDSPAVTREKEHWNSDTGATDHMASDETVFEDYTPALPGTMCEIANETFVPVEGWGRLVLRVSQPGGKSRVAVLNRVAHVPELGRNLISTHRATDTSGKSFIY 498
            CW CG + HI + C +     NE + A + T     A+        + DSP      E W  D+GA+ H  +   + ++Y     G +  +A++  + V G G +  R++ P G   V +L +V HVPEL RNLIS  +  DT G + ++
Sbjct:  236 CWNCGKTGHIRKNCWELKKK-NENDSANVVTEEVHDALLL------SVDSPI-----ESWVLDSGASFHTTAHREIIQNYVAGDFGKVY-LADDEALDVVGMGDV--RITLPNGS--VWLLQKVRHVPELKRNLISVGQL-DTEGHAILF 367
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BLAST of mRNA_H-paniculata_contig52221.12590.1 vs. uniprot
Match: A0A2N9GVZ5_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GVZ5_FAGSY)

HSP 1 Score: 55.1 bits (131), Expect = 2.020e-5
Identity = 46/150 (30.67%), Postives = 73/150 (48.67%), Query Frame = 1 
Query:   49 CWVCGSSEHIARRCPKRHHDTNEGEVALLATIRGPKAMTAVTDDRQTTDSPAVTREKEHWNSDTGATDHMASDETVFEDYTPALPGTMCEIANETFVPVEGWGRLVLRVSQPGGKSRVAVLNRVAHVPELGRNLISTHRATDTSGKSFIY 498
            CW CG + HI + C +     NE + A + T     A+        + DSP      E W  D+GA+ H  +   + ++Y     G +  +A++  + V G G +  R++ P G   V +L +V HVPEL RNLIS  +  DT G + ++
Sbjct:  236 CWNCGKTGHIRKNCWELKKK-NENDSANVVTEEVHDALLL------SVDSPI-----ESWVLDSGASFHTTAHREIIQNYVAGDFGKVY-LADDEALDVVGMGDV--RITLPNGS--VWLLQKVRHVPELKRNLISVGQL-DTEGHAILF 367
[Close]
BLAST of mRNA_H-paniculata_contig52221.12590.1 vs. uniprot
Match: A0A2N9HHD8_FAGSY (Uncharacterized protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HHD8_FAGSY)

HSP 1 Score: 55.1 bits (131), Expect = 2.020e-5
Identity = 46/150 (30.67%), Postives = 73/150 (48.67%), Query Frame = 1 
Query:   49 CWVCGSSEHIARRCPKRHHDTNEGEVALLATIRGPKAMTAVTDDRQTTDSPAVTREKEHWNSDTGATDHMASDETVFEDYTPALPGTMCEIANETFVPVEGWGRLVLRVSQPGGKSRVAVLNRVAHVPELGRNLISTHRATDTSGKSFIY 498
            CW CG + HI + C +     NE + A + T     A+        + DSP      E W  D+GA+ H  +   + ++Y     G +  +A++  + V G G +  R++ P G   V +L +V HVPEL RNLIS  +  DT G + ++
Sbjct:  217 CWNCGKTGHIRKNCWELKKK-NENDSANVVTEEVHDALLL------SVDSPI-----ESWVLDSGASFHTTAHREIIQNYVAGDFGKVY-LADDEALDVVGMGDV--RITLPNGS--VWLLQKVRHVPELKRNLISVGQL-DTEGHAILF 348
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BLAST of mRNA_H-paniculata_contig52221.12590.1 vs. uniprot
Match: A0A438D407_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438D407_VITVI)

HSP 1 Score: 55.1 bits (131), Expect = 2.020e-5
Identity = 43/144 (29.86%), Postives = 69/144 (47.92%), Query Frame = 1 
Query:   49 CWVCGSSEHIARRC--PKRHHDTNEGEVALLATIRGPKAMTAVTDDRQTTDSPAVTREKEHWNSDTGATDHMASDETVFEDYTPALPGTMCEIANETFVPVEGWGRLVLRVSQPGGKSRVAVLNRVAHVPELGRNLISTHRATD 474
            CW CG + H  R+C  PK+ ++ +                 AVT++ Q     AV    + W  D+GA+ H  S   + ++Y     G +  +A+ + + V G G +  R+S P G   V +L +V H+P+L RNLIS  +  D
Sbjct:  166 CWNCGKTGHFKRQCKSPKKKNEDDSAN--------------AVTEEVQDALLLAVDSPLDDWVLDSGASFHTTSHREIIQNYVAGDFGKVY-LADGSALDVVGLGDV--RISLPNGS--VWLLEKVRHIPDLRRNLISVGQLDD 290
[Close]
BLAST of mRNA_H-paniculata_contig52221.12590.1 vs. uniprot
Match: A0A2N9J3Y8_FAGSY (Uncharacterized protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9J3Y8_FAGSY)

HSP 1 Score: 55.1 bits (131), Expect = 2.030e-5
Identity = 46/150 (30.67%), Postives = 73/150 (48.67%), Query Frame = 1 
Query:   49 CWVCGSSEHIARRCPKRHHDTNEGEVALLATIRGPKAMTAVTDDRQTTDSPAVTREKEHWNSDTGATDHMASDETVFEDYTPALPGTMCEIANETFVPVEGWGRLVLRVSQPGGKSRVAVLNRVAHVPELGRNLISTHRATDTSGKSFIY 498
            CW CG + HI + C +     NE + A + T     A+        + DSP      E W  D+GA+ H  +   + ++Y     G +  +A++  + V G G +  R++ P G   V +L +V HVPEL RNLIS  +  DT G + ++
Sbjct:  236 CWNCGKTGHIRKNCWELKKK-NENDSANVVTEEVHDALLL------SVDSPI-----ESWVLDSGASFHTTAHREIIQNYVAGDFGKVY-LADDEALDVVGMGDV--RITLPNGS--VWLLQKVRHVPELKRNLISVGQL-DTEGHAILF 367
[Close]
BLAST of mRNA_H-paniculata_contig52221.12590.1 vs. uniprot
Match: A0A438H787_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438H787_VITVI)

HSP 1 Score: 55.1 bits (131), Expect = 2.030e-5
Identity = 43/144 (29.86%), Postives = 69/144 (47.92%), Query Frame = 1 
Query:   49 CWVCGSSEHIARRC--PKRHHDTNEGEVALLATIRGPKAMTAVTDDRQTTDSPAVTREKEHWNSDTGATDHMASDETVFEDYTPALPGTMCEIANETFVPVEGWGRLVLRVSQPGGKSRVAVLNRVAHVPELGRNLISTHRATD 474
            CW CG + H  R+C  PK+ ++ +                 AVT++ Q     AV    + W  D+GA+ H  S   + ++Y     G +  +A+ + + V G G +  R+S P G   V +L +V H+P+L RNLIS  +  D
Sbjct:  239 CWNCGKTGHFKRQCKSPKKKNEDDSAN--------------AVTEEVQDALLLAVDSPLDDWVLDSGASFHTTSHREIIQNYVAGDFGKVY-LADGSALDVVGLGDV--RISLPNGS--VWLLEKVQHIPDLRRNLISVGQLDD 363
[Close]
BLAST of mRNA_H-paniculata_contig52221.12590.1 vs. uniprot
Match: A0A2N9IKQ5_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IKQ5_FAGSY)

HSP 1 Score: 55.1 bits (131), Expect = 2.040e-5
Identity = 46/150 (30.67%), Postives = 73/150 (48.67%), Query Frame = 1 
Query:   49 CWVCGSSEHIARRCPKRHHDTNEGEVALLATIRGPKAMTAVTDDRQTTDSPAVTREKEHWNSDTGATDHMASDETVFEDYTPALPGTMCEIANETFVPVEGWGRLVLRVSQPGGKSRVAVLNRVAHVPELGRNLISTHRATDTSGKSFIY 498
            CW CG + HI + C +     NE + A + T     A+        + DSP      E W  D+GA+ H  +   + ++Y     G +  +A++  + V G G +  R++ P G   V +L +V HVPEL RNLIS  +  DT G + ++
Sbjct:  196 CWNCGKTGHIRKNCWELKKK-NENDSANVVTEEVHDALLL------SVDSPI-----ESWVLDSGASFHTTAHREIIQNYVAGDFGKVY-LADDEALDVVGMGDV--RITLPNGS--VWLLQKVRHVPELKRNLISVGQL-DTEGHAILF 327
[Close]
BLAST of mRNA_H-paniculata_contig52221.12590.1 vs. uniprot
Match: A0A2N9JBD5_FAGSY (Uncharacterized protein n=3 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9JBD5_FAGSY)

HSP 1 Score: 55.1 bits (131), Expect = 2.070e-5
Identity = 46/150 (30.67%), Postives = 73/150 (48.67%), Query Frame = 1 
Query:   49 CWVCGSSEHIARRCPKRHHDTNEGEVALLATIRGPKAMTAVTDDRQTTDSPAVTREKEHWNSDTGATDHMASDETVFEDYTPALPGTMCEIANETFVPVEGWGRLVLRVSQPGGKSRVAVLNRVAHVPELGRNLISTHRATDTSGKSFIY 498
            CW CG + HI + C +     NE + A + T     A+        + DSP      E W  D+GA+ H  +   + ++Y     G +  +A++  + V G G +  R++ P G   V +L +V HVPEL RNLIS  +  DT G + ++
Sbjct:  236 CWNCGKTGHIRKNCWELKKK-NENDSANVVTEEVHDALLL------SVDSPI-----ESWVLDSGASFHTTAHREIIQNYVAGDFGKVY-LADDEALDVVGMGDV--RITLPNGS--VWLLQKVRHVPELKRNLISVGQL-DTEGHAILF 367
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig52221.12590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
C1IJC5_HORVU4.490e-630.00Polyprotein n=1 Tax=Hordeum vulgare TaxID=4513 Rep... [more]
A0A2N9EE40_FAGSY1.960e-530.67Uncharacterized protein n=3 Tax=Fagus sylvatica Ta... [more]
A0A2N9G6Q3_FAGSY2.010e-530.67Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9GVZ5_FAGSY2.020e-530.67Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9HHD8_FAGSY2.020e-530.67Uncharacterized protein n=2 Tax=Fagus sylvatica Ta... [more]
A0A438D407_VITVI2.020e-529.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9J3Y8_FAGSY2.030e-530.67Uncharacterized protein n=2 Tax=Fagus sylvatica Ta... [more]
A0A438H787_VITVI2.030e-529.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9IKQ5_FAGSY2.040e-530.67Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9JBD5_FAGSY2.070e-530.67Uncharacterized protein n=3 Tax=Fagus sylvatica Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig52221contigH-paniculata_contig52221:7..597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score67.8
Seed ortholog evalue6.5e-09
Seed eggNOG ortholog3750.XP_008388960.1
KEGG koko:K02350
KEGG Pathwayko01100,ko01524,ko03460,map01100,map01524,map03460
KEGG ModuleM00293
Hectar predicted targeting categoryother localisation
GOsGO:0000731,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010225,GO:0016035,GO:0018130,GO:0019438,GO:0019985,GO:0032991,GO:0033554,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0042276,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0071214,GO:0071478,GO:0071482,GO:0071494,GO:0071704,GO:0071897,GO:0090304,GO:0104004,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.DNA polymerase
EggNOG OGs37RRF@33090,3GCAV@35493,COG0417@1,COG2801@1,KOG0017@2759,KOG0968@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Exons1
Model size591
Cds size591
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930520.5968206-CDS-H-paniculata_contig52221:6..5971622930520.5968206-CDS-H-paniculata_contig52221:6..597Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52221 7..597 +
1691481329.4698217-CDS-H-paniculata_contig52221:6..5971691481329.4698217-CDS-H-paniculata_contig52221:6..597Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52221 7..597 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig52221.12590.1prot_H-paniculata_contig52221.12590.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig52221 7..597 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig52221.12590.1

>prot_H-paniculata_contig52221.12590.1 ID=prot_H-paniculata_contig52221.12590.1|Name=mRNA_H-paniculata_contig52221.12590.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=197bp
GAKGDDQKKTKKDRGLCWVCGSSEHIARRCPKRHHDTNEGEVALLATIRG
PKAMTAVTDDRQTTDSPAVTREKEHWNSDTGATDHMASDETVFEDYTPAL
PGTMCEIANETFVPVEGWGRLVLRVSQPGGKSRVAVLNRVAHVPELGRNL
ISTHRATDTSGKSFIYSANKASLGLGEEQSLIFNVPATSGLYEVEAV
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mRNA from alignment at H-paniculata_contig52221:7..597+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig52221.12590.1 ID=mRNA_H-paniculata_contig52221.12590.1|Name=mRNA_H-paniculata_contig52221.12590.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=591bp|location=Sequence derived from alignment at H-paniculata_contig52221:7..597+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGCCAAAGGGGACGATCAAAAGAAAACGAAAAAGGATCGAGGCCTGTG
CTGGGTGTGCGGTAGCTCAGAGCACATCGCGAGACGGTGCCCGAAACGCC
ACCACGATACCAACGAAGGAGAAGTAGCACTCCTGGCTACCATAAGAGGA
CCCAAGGCAATGACGGCCGTAACTGACGATCGCCAGACAACAGACAGCCC
TGCCGTGACCAGAGAGAAGGAACACTGGAATTCAGACACCGGTGCGACAG
ACCACATGGCATCGGATGAGACTGTGTTCGAGGACTACACGCCAGCGCTC
CCGGGTACCATGTGTGAAATCGCCAACGAGACATTCGTACCTGTAGAGGG
GTGGGGACGTCTTGTGCTTCGAGTAAGCCAACCGGGGGGAAAATCGCGGG
TAGCAGTGTTAAACAGGGTTGCCCACGTACCCGAGCTCGGGCGCAATTTA
ATCTCCACACACCGAGCAACAGATACATCGGGTAAATCGTTCATATACAG
TGCCAACAAAGCAAGCCTCGGGCTAGGGGAGGAGCAGAGTCTTATTTTCA
ACGTGCCAGCAACTTCAGGACTATATGAGGTGGAGGCCGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig52221:7..597+

>mRNA_H-paniculata_contig52221.12590.1 ID=mRNA_H-paniculata_contig52221.12590.1|Name=mRNA_H-paniculata_contig52221.12590.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1182bp|location=Sequence derived from alignment at H-paniculata_contig52221:7..597+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGCCAAAGGGGACGATCAAAAGAAAACGAAAAAGGATCGAGGCCTGTG
CTGGGTGTGCGGTAGCTCAGAGCACATCGCGAGACGGTGCCCGAAACGCC
ACCACGATACCAACGAAGGAGAAGTAGCACTCCTGGCTACCATAAGAGGA
CCCAAGGCAATGACGGCCGTAACTGACGATCGCCAGACAACAGACAGCCC
TGCCGTGACCAGAGAGAAGGAACACTGGAATTCAGACACCGGTGCGACAG
ACCACATGGCATCGGATGAGACTGTGTTCGAGGACTACACGCCAGCGCTC
CCGGGTACCATGTGTGAAATCGCCAACGAGACATTCGTACCTGTAGAGGG
GTGGGGACGTCTTGTGCTTCGAGTAAGCCAACCGGGGGGAAAATCGCGGG
TAGCAGTGTTAAACAGGGTTGCCCACGTACCCGAGCTCGGGCGCAATTTA
ATCTCCACACACCGAGCAACAGATACATCGGGTAAATCGTTCATATACAG
TGCCAACAAAGCAAGCCTCGGGCTAGGGGAGGAGCAGAGTCTTATTTTCA
ACGTGCCAGCAACTTCAGGACTATATGAGGTGGAGGCCGTCGGCGCCAAA
GGGGACGATCAAAAGAAAACGAAAAAGGATCGAGGCCTGTGCTGGGTGTG
CGGTAGCTCAGAGCACATCGCGAGACGGTGCCCGAAACGCCACCACGATA
CCAACGAAGGAGAAGTAGCACTCCTGGCTACCATAAGAGGACCCAAGGCA
ATGACGGCCGTAACTGACGATCGCCAGACAACAGACAGCCCTGCCGTGAC
CAGAGAGAAGGAACACTGGAATTCAGACACCGGTGCGACAGACCACATGG
CATCGGATGAGACTGTGTTCGAGGACTACACGCCAGCGCTCCCGGGTACC
ATGTGTGAAATCGCCAACGAGACATTCGTACCTGTAGAGGGGTGGGGACG
TCTTGTGCTTCGAGTAAGCCAACCGGGGGGAAAATCGCGGGTAGCAGTGT
TAAACAGGGTTGCCCACGTACCCGAGCTCGGGCGCAATTTAATCTCCACA
CACCGAGCAACAGATACATCGGGTAAATCGTTCATATACAGTGCCAACAA
AGCAAGCCTCGGGCTAGGGGAGGAGCAGAGTCTTATTTTCAACGTGCCAG
CAACTTCAGGACTATATGAGGTGGAGGCCGTC
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