mRNA_H-paniculata_contig52110.12576.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig52110.12576.1
Unique NamemRNA_H-paniculata_contig52110.12576.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig52110.12576.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.470e-11
Identity = 46/130 (35.38%), Postives = 69/130 (53.08%), Query Frame = 1 
Query:    4 INNQAELDAWNHLNQQLYSVLLLSTKGAANSFLVRFGGRPEAGHLPDGHAAWTALGEKYLHPSMQRRRLLMRQLDSKIMAPNQDPDEYLTEIFHLRDELEYIGETFSEGRIMDIILEGLTDDYDQIKFAA 393
            I NQ ELD +   + QL+++L     G A   L R     E+     G A W  L  K+      RRR L R+L+S  M    DPD ++T ++HL ++L +IG T ++ ++ DIIL+GL  +Y  I  A+
Sbjct:  187 IVNQHELDEFEEADSQLFNILYHILIGPAKYVLRRHAPVDESSG--SGLAVWKELESKFQPADEHRRRNLERELESATMRTGTDPDIFITHVWHLAEQLRFIGGTVTDEKLGDIILQGLPAEYHLISGAS 314
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig52110.12576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY84_9PHAE1.470e-1135.38Integrase catalytic domain-containing protein n=1 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig52110contigH-paniculata_contig52110:65..670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size606
Cds size606
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930518.7807014-CDS-H-paniculata_contig52110:64..6701622930518.7807014-CDS-H-paniculata_contig52110:64..670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52110 65..670 -
1691481328.6679645-CDS-H-paniculata_contig52110:64..6701691481328.6679645-CDS-H-paniculata_contig52110:64..670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52110 65..670 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig52110.12576.1prot_H-paniculata_contig52110.12576.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig52110 65..670 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig52110.12576.1

>prot_H-paniculata_contig52110.12576.1 ID=prot_H-paniculata_contig52110.12576.1|Name=mRNA_H-paniculata_contig52110.12576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=202bp
VINNQAELDAWNHLNQQLYSVLLLSTKGAANSFLVRFGGRPEAGHLPDGH
AAWTALGEKYLHPSMQRRRLLMRQLDSKIMAPNQDPDEYLTEIFHLRDEL
EYIGETFSEGRIMDIILEGLTDDYDQIKFAAERDPNFSLKDMETTMRNVY
ANRIARGQLSSSRRKGRESAMMASSSAFKGICNYCHKPGHIKSECRKLKR
WQ
back to top

mRNA from alignment at H-paniculata_contig52110:65..670-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig52110.12576.1 ID=mRNA_H-paniculata_contig52110.12576.1|Name=mRNA_H-paniculata_contig52110.12576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=606bp|location=Sequence derived from alignment at H-paniculata_contig52110:65..670- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCATTAACAACCAGGCCGAGCTCGATGCATGGAACCACCTGAACCAGCA
GCTTTACAGTGTCCTGCTCCTGTCCACCAAGGGGGCTGCAAATAGTTTCC
TCGTTCGGTTCGGGGGTAGGCCCGAGGCTGGTCATCTACCCGATGGTCAC
GCGGCCTGGACAGCATTGGGCGAGAAATATCTGCACCCGTCCATGCAGCG
CCGCCGTCTACTTATGCGCCAGCTAGACAGCAAAATCATGGCGCCTAATC
AAGACCCTGATGAGTACCTGACAGAGATATTCCATCTGCGCGACGAGCTC
GAGTACATCGGGGAAACTTTCTCGGAAGGGCGCATCATGGATATCATTCT
TGAAGGGCTCACAGACGATTACGACCAAATCAAATTTGCCGCCGAGAGGG
ACCCCAATTTTTCCCTGAAAGACATGGAAACCACGATGAGAAATGTGTAC
GCCAACCGCATTGCGCGTGGTCAACTCTCATCCTCACGCAGGAAGGGTCG
TGAGTCAGCCATGATGGCCTCGTCGTCGGCTTTCAAAGGCATCTGTAATT
ACTGCCACAAACCTGGACATATCAAGAGCGAGTGTAGAAAGCTGAAGCGG
TGGCAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig52110:65..670-

>mRNA_H-paniculata_contig52110.12576.1 ID=mRNA_H-paniculata_contig52110.12576.1|Name=mRNA_H-paniculata_contig52110.12576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1212bp|location=Sequence derived from alignment at H-paniculata_contig52110:65..670- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCATTAACAACCAGGCCGAGCTCGATGCATGGAACCACCTGAACCAGCA
GCTTTACAGTGTCCTGCTCCTGTCCACCAAGGGGGCTGCAAATAGTTTCC
TCGTTCGGTTCGGGGGTAGGCCCGAGGCTGGTCATCTACCCGATGGTCAC
GCGGCCTGGACAGCATTGGGCGAGAAATATCTGCACCCGTCCATGCAGCG
CCGCCGTCTACTTATGCGCCAGCTAGACAGCAAAATCATGGCGCCTAATC
AAGACCCTGATGAGTACCTGACAGAGATATTCCATCTGCGCGACGAGCTC
GAGTACATCGGGGAAACTTTCTCGGAAGGGCGCATCATGGATATCATTCT
TGAAGGGCTCACAGACGATTACGACCAAATCAAATTTGCCGCCGAGAGGG
ACCCCAATTTTTCCCTGAAAGACATGGAAACCACGATGAGAAATGTGTAC
GCCAACCGCATTGCGCGTGGTCAACTCTCATCCTCACGCAGGAAGGGTCG
TGAGTCAGCCATGATGGCCTCGTCGTCGGCTTTCAAAGGCATCTGTAATT
ACTGCCACAAACCTGGACATATCAAGAGCGAGTGTAGAAAGCTGAAGCGG
TGGCAAGTCATTAACAACCAGGCCGAGCTCGATGCATGGAACCACCTGAA
CCAGCAGCTTTACAGTGTCCTGCTCCTGTCCACCAAGGGGGCTGCAAATA
GTTTCCTCGTTCGGTTCGGGGGTAGGCCCGAGGCTGGTCATCTACCCGAT
GGTCACGCGGCCTGGACAGCATTGGGCGAGAAATATCTGCACCCGTCCAT
GCAGCGCCGCCGTCTACTTATGCGCCAGCTAGACAGCAAAATCATGGCGC
CTAATCAAGACCCTGATGAGTACCTGACAGAGATATTCCATCTGCGCGAC
GAGCTCGAGTACATCGGGGAAACTTTCTCGGAAGGGCGCATCATGGATAT
CATTCTTGAAGGGCTCACAGACGATTACGACCAAATCAAATTTGCCGCCG
AGAGGGACCCCAATTTTTCCCTGAAAGACATGGAAACCACGATGAGAAAT
GTGTACGCCAACCGCATTGCGCGTGGTCAACTCTCATCCTCACGCAGGAA
GGGTCGTGAGTCAGCCATGATGGCCTCGTCGTCGGCTTTCAAAGGCATCT
GTAATTACTGCCACAAACCTGGACATATCAAGAGCGAGTGTAGAAAGCTG
AAGCGGTGGCAA
back to top