prot_H-paniculata_contig52110.12576.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig52110.12576.1
Unique Nameprot_H-paniculata_contig52110.12576.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length202
Homology
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BLAST of mRNA_H-paniculata_contig52110.12576.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.470e-11
Identity = 46/130 (35.38%), Postives = 69/130 (53.08%), Query Frame = 0 
Query:    2 INNQAELDAWNHLNQQLYSVLLLSTKGAANSFLVRFGGRPEAGHLPDGHAAWTALGEKYLHPSMQRRRLLMRQLDSKIMAPNQDPDEYLTEIFHLRDELEYIGETFSEGRIMDIILEGLTDDYDQIKFAA 131
            I NQ ELD +   + QL+++L     G A   L R     E+     G A W  L  K+      RRR L R+L+S  M    DPD ++T ++HL ++L +IG T ++ ++ DIIL+GL  +Y  I  A+
Sbjct:  187 IVNQHELDEFEEADSQLFNILYHILIGPAKYVLRRHAPVDESSG--SGLAVWKELESKFQPADEHRRRNLERELESATMRTGTDPDIFITHVWHLAEQLRFIGGTVTDEKLGDIILQGLPAEYHLISGAS 314
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig52110.12576.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY84_9PHAE1.470e-1135.38Integrase catalytic domain-containing protein n=1 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D4.10.60.10coord: 155..202
e-value: 3.7E-5
score: 25.6
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 50..141
e-value: 1.9E-11
score: 43.8
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 50..197
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 178..201

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig52110contigH-paniculata_contig52110:65..670 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig52110.12576.1mRNA_H-paniculata_contig52110.12576.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig52110 65..670 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig52110.12576.1 ID=prot_H-paniculata_contig52110.12576.1|Name=mRNA_H-paniculata_contig52110.12576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=202bp
VINNQAELDAWNHLNQQLYSVLLLSTKGAANSFLVRFGGRPEAGHLPDGH
AAWTALGEKYLHPSMQRRRLLMRQLDSKIMAPNQDPDEYLTEIFHLRDEL
EYIGETFSEGRIMDIILEGLTDDYDQIKFAAERDPNFSLKDMETTMRNVY
ANRIARGQLSSSRRKGRESAMMASSSAFKGICNYCHKPGHIKSECRKLKR
WQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036875Znf_CCHC_sf