mRNA_H-paniculata_contig521.12574.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig521.12574.1 vs. uniprot
Match: D7FPJ4_ECTSI (Vacuolar sorting receptor, putative (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPJ4_ECTSI) HSP 1 Score: 101 bits (251), Expect = 9.510e-26 Identity = 48/82 (58.54%), Postives = 63/82 (76.83%), Query Frame = 1
Query: 67 VLLVNRGEVSIVQKVLTAQAAGARGVLIIDLEIENGGCEDGFAFCGRLGGALDGGFAQRDGGHTWAAVTLPAVLISASQGKR 312
V+L RGEV +V+K+L AQ AGA GV+++D NGGC+DG CGRLGGA DGGFA+RDG H W+ V +PAV++SA+ G+R
Sbjct: 5 VVLFERGEVPVVEKILKAQTAGAVGVIVVD----NGGCDDGLVDCGRLGGARDGGFAKRDGVHAWSGVKIPAVMVSAADGER 82
BLAST of mRNA_H-paniculata_contig521.12574.1 vs. uniprot
Match: A0A482SJ43_9ARCH (PA domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJ43_9ARCH) HSP 1 Score: 72.4 bits (176), Expect = 2.400e-13 Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = 1
Query: 1 LVYAVPNDCRSGLL-NAEDVHGQVLLVNRGEVSIVQKVLTAQAAGARGVLIIDLEIENGGCEDGFAFCGRLGGAL-DGGFAQRDGGHTWAAVTLPAVLISASQGKRL 315
LVY VPN L N + ++ V+RGE+S++ KVL Q A A GV+I D +G C + F +CG G+L +GGFA D +W AV +P V+++++ RL
Sbjct: 76 LVYCVPNYAEGPFLANDHQLSDRIAFVDRGEISLLDKVLKIQEANALGVVIAD----DGSCYEDFHYCGPRAGSLQEGGFAAYDNEQSWLAVEIPVVMVTSTNADRL 178
BLAST of mRNA_H-paniculata_contig521.12574.1 vs. uniprot
Match: A0A6G0W7Z3_9STRA (PA domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W7Z3_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 4.290e-13 Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1
Query: 1 LVYAVPNDCRSGLLNAEDVHGQVLLVNRGEVSIVQKVLTAQAAGARGVLIIDLEIENGGCEDGFAFCGRLGGALDGGFAQRDGGHTWAAVTLPAVLISASQGKRL 315
+ YAVPN L N + G+++LV+RG+V I++KV Q AG V+++D +G C DGF CG LG F ++D W + +P VLI G R+
Sbjct: 80 IAYAVPNTANDDLFNIHQLEGRIVLVDRGDVPILEKVERVQEAGGIAVVLVD----DGECSDGFE-CGSLGSRSTHNFLEQDDSFRWNHIVIPVVLILHDDGMRI 179
BLAST of mRNA_H-paniculata_contig521.12574.1 vs. uniprot
Match: A0A7S1C5X9_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5X9_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 9.410e-13 Identity = 48/106 (45.28%), Postives = 59/106 (55.66%), Query Frame = 1
Query: 1 LVYAVPNDCRSGLLNAEDVHGQVLLVNRGEVSIVQKVLTAQAAGARGVLIIDLEIENGGCEDGFAFCGRLGGALDG-GFAQRDGGHTWAAVTLPAVLISASQGKRL 315
LVYAVPND S +LN V G V+L++RGEV+ V K AQ AGA +LI D G C D F G LG +G G A RD W + +P +IS S +RL
Sbjct: 236 LVYAVPNDGSSAVLNT--VGGTVVLMDRGEVAFVDKARAAQEAGADALLIAD----TGQCGDDFDCGGWLGSKSEGKGLAARDSPSAWEGIYIPVAMISRSSAERL 335
BLAST of mRNA_H-paniculata_contig521.12574.1 vs. uniprot
Match: A0A2R5GKD5_9STRA (PA domain-containing protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GKD5_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 1.080e-11 Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = 1
Query: 1 LVYAVPNDCRSGLLNAEDVHGQVLLVNRGE-VSIVQKVLTAQAAGARGVLIIDLEIENGGCEDGFAFCG-----RLGGALDGGFAQRDGGHTWAAVTLPAVLISASQGKRL 315
L AVPND R ++N V ++ LV RG V++++KVL Q AGA V+I+D E GC++ F +CG R L GFA +D +W +V +PA+LI +L
Sbjct: 43 LAIAVPNDAREAIINGHQVKDRLTLVYRGGGVTLLEKVLRVQEAGASAVIIVD---EEDGCDENF-YCGPFLGQRPADRLSLGFAHQDLASSWRSVRIPAILIRREDALKL 149
BLAST of mRNA_H-paniculata_contig521.12574.1 vs. uniprot
Match: D8LI37_ECTSI (PA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI37_ECTSI) HSP 1 Score: 58.5 bits (140), Expect = 5.160e-8 Identity = 39/105 (37.14%), Postives = 53/105 (50.48%), Query Frame = 1
Query: 1 LVYAVPNDCRSGLLNAEDVHGQVLLVNRGEVSIVQKVLTAQAAGARGVLIIDLEIENGGCEDGFAFCGRLGGALDGGFAQRDGGHTWAAVTLPAVLISASQGKRL 315
+V A P D RS L N V ++++V RG++ IV KVL AQ AGA GV++ D +G C F G G+A D W V +P VL+ +RL
Sbjct: 86 VVVAQPADARSELENGRFVRNRIVVVQRGDIPIVHKVLAAQRAGALGVIVAD----DGRCGGSFGQLCVYGSDPPEGWAALDMPRPWLDVRVPVVLMLREDAERL 186
BLAST of mRNA_H-paniculata_contig521.12574.1 vs. uniprot
Match: A0A7S1XPP5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XPP5_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 1.280e-7 Identity = 42/90 (46.67%), Postives = 52/90 (57.78%), Query Frame = 1
Query: 55 VHGQVLLVNRGEVSIVQKVLTAQAAGARGVLIIDLEIENGGCEDGFAFC--GRLGGALDG-GFAQRDGGHTWAAVTLPAVLISASQGKRL 315
VH +VLLV RG +VQKVLTAQ AGA GV+I+D +G CE C G +G GFA +D W V +PAVL+ A G+ L
Sbjct: 771 VHHRVLLVERGGCPLVQKVLTAQKAGALGVIIVD----DGRCEKFDQHCVPGSDKVLSEGQGFAAQDHPGDWRKVRIPAVLVLADDGEVL 856
BLAST of mRNA_H-paniculata_contig521.12574.1 vs. uniprot
Match: A0A0U2T948_9MAXI (Pradc1-like isoform 2 n=1 Tax=Tortanus forcipatus TaxID=197020 RepID=A0A0U2T948_9MAXI) HSP 1 Score: 51.2 bits (121), Expect = 1.830e-5 Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 1
Query: 13 VPND--CRSGLL-NAEDVHGQVLLVNRGEVSIVQKVLTAQAAGARGVLIIDLEIEN 171
VP D C G + N ED+ G++ L++RG+ S V KV+ A+ AGARGV+I D + EN
Sbjct: 80 VPTDPACGCGYIRNQEDIEGRIALIDRGDCSFVSKVVRAEEAGARGVIITDQDAEN 135 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig521.12574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig521.12574.1 >prot_H-paniculata_contig521.12574.1 ID=prot_H-paniculata_contig521.12574.1|Name=mRNA_H-paniculata_contig521.12574.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp LVYAVPNDCRSGLLNAEDVHGQVLLVNRGEVSIVQKVLTAQAAGARGVLIback to top mRNA from alignment at H-paniculata_contig521:29604..30215- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig521.12574.1 ID=mRNA_H-paniculata_contig521.12574.1|Name=mRNA_H-paniculata_contig521.12574.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=612bp|location=Sequence derived from alignment at H-paniculata_contig521:29604..30215- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig521:29604..30215- >mRNA_H-paniculata_contig521.12574.1 ID=mRNA_H-paniculata_contig521.12574.1|Name=mRNA_H-paniculata_contig521.12574.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig521:29604..30215- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |