mRNA_H-paniculata_contig521.12574.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig521.12574.1
Unique NamemRNA_H-paniculata_contig521.12574.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig521.12574.1 vs. uniprot
Match: D7FPJ4_ECTSI (Vacuolar sorting receptor, putative (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPJ4_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 9.510e-26
Identity = 48/82 (58.54%), Postives = 63/82 (76.83%), Query Frame = 1
Query:   67 VLLVNRGEVSIVQKVLTAQAAGARGVLIIDLEIENGGCEDGFAFCGRLGGALDGGFAQRDGGHTWAAVTLPAVLISASQGKR 312
            V+L  RGEV +V+K+L AQ AGA GV+++D    NGGC+DG   CGRLGGA DGGFA+RDG H W+ V +PAV++SA+ G+R
Sbjct:    5 VVLFERGEVPVVEKILKAQTAGAVGVIVVD----NGGCDDGLVDCGRLGGARDGGFAKRDGVHAWSGVKIPAVMVSAADGER 82          
BLAST of mRNA_H-paniculata_contig521.12574.1 vs. uniprot
Match: A0A482SJ43_9ARCH (PA domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJ43_9ARCH)

HSP 1 Score: 72.4 bits (176), Expect = 2.400e-13
Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = 1
Query:    1 LVYAVPNDCRSGLL-NAEDVHGQVLLVNRGEVSIVQKVLTAQAAGARGVLIIDLEIENGGCEDGFAFCGRLGGAL-DGGFAQRDGGHTWAAVTLPAVLISASQGKRL 315
            LVY VPN      L N   +  ++  V+RGE+S++ KVL  Q A A GV+I D    +G C + F +CG   G+L +GGFA  D   +W AV +P V+++++   RL
Sbjct:   76 LVYCVPNYAEGPFLANDHQLSDRIAFVDRGEISLLDKVLKIQEANALGVVIAD----DGSCYEDFHYCGPRAGSLQEGGFAAYDNEQSWLAVEIPVVMVTSTNADRL 178          
BLAST of mRNA_H-paniculata_contig521.12574.1 vs. uniprot
Match: A0A6G0W7Z3_9STRA (PA domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W7Z3_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 4.290e-13
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1
Query:    1 LVYAVPNDCRSGLLNAEDVHGQVLLVNRGEVSIVQKVLTAQAAGARGVLIIDLEIENGGCEDGFAFCGRLGGALDGGFAQRDGGHTWAAVTLPAVLISASQGKRL 315
            + YAVPN     L N   + G+++LV+RG+V I++KV   Q AG   V+++D    +G C DGF  CG LG      F ++D    W  + +P VLI    G R+
Sbjct:   80 IAYAVPNTANDDLFNIHQLEGRIVLVDRGDVPILEKVERVQEAGGIAVVLVD----DGECSDGFE-CGSLGSRSTHNFLEQDDSFRWNHIVIPVVLILHDDGMRI 179          
BLAST of mRNA_H-paniculata_contig521.12574.1 vs. uniprot
Match: A0A7S1C5X9_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5X9_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 9.410e-13
Identity = 48/106 (45.28%), Postives = 59/106 (55.66%), Query Frame = 1
Query:    1 LVYAVPNDCRSGLLNAEDVHGQVLLVNRGEVSIVQKVLTAQAAGARGVLIIDLEIENGGCEDGFAFCGRLGGALDG-GFAQRDGGHTWAAVTLPAVLISASQGKRL 315
            LVYAVPND  S +LN   V G V+L++RGEV+ V K   AQ AGA  +LI D     G C D F   G LG   +G G A RD    W  + +P  +IS S  +RL
Sbjct:  236 LVYAVPNDGSSAVLNT--VGGTVVLMDRGEVAFVDKARAAQEAGADALLIAD----TGQCGDDFDCGGWLGSKSEGKGLAARDSPSAWEGIYIPVAMISRSSAERL 335          
BLAST of mRNA_H-paniculata_contig521.12574.1 vs. uniprot
Match: A0A2R5GKD5_9STRA (PA domain-containing protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GKD5_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.080e-11
Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = 1
Query:    1 LVYAVPNDCRSGLLNAEDVHGQVLLVNRGE-VSIVQKVLTAQAAGARGVLIIDLEIENGGCEDGFAFCG-----RLGGALDGGFAQRDGGHTWAAVTLPAVLISASQGKRL 315
            L  AVPND R  ++N   V  ++ LV RG  V++++KVL  Q AGA  V+I+D   E  GC++ F +CG     R    L  GFA +D   +W +V +PA+LI      +L
Sbjct:   43 LAIAVPNDAREAIINGHQVKDRLTLVYRGGGVTLLEKVLRVQEAGASAVIIVD---EEDGCDENF-YCGPFLGQRPADRLSLGFAHQDLASSWRSVRIPAILIRREDALKL 149          
BLAST of mRNA_H-paniculata_contig521.12574.1 vs. uniprot
Match: D8LI37_ECTSI (PA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI37_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 5.160e-8
Identity = 39/105 (37.14%), Postives = 53/105 (50.48%), Query Frame = 1
Query:    1 LVYAVPNDCRSGLLNAEDVHGQVLLVNRGEVSIVQKVLTAQAAGARGVLIIDLEIENGGCEDGFAFCGRLGGALDGGFAQRDGGHTWAAVTLPAVLISASQGKRL 315
            +V A P D RS L N   V  ++++V RG++ IV KVL AQ AGA GV++ D    +G C   F      G     G+A  D    W  V +P VL+     +RL
Sbjct:   86 VVVAQPADARSELENGRFVRNRIVVVQRGDIPIVHKVLAAQRAGALGVIVAD----DGRCGGSFGQLCVYGSDPPEGWAALDMPRPWLDVRVPVVLMLREDAERL 186          
BLAST of mRNA_H-paniculata_contig521.12574.1 vs. uniprot
Match: A0A7S1XPP5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XPP5_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.280e-7
Identity = 42/90 (46.67%), Postives = 52/90 (57.78%), Query Frame = 1
Query:   55 VHGQVLLVNRGEVSIVQKVLTAQAAGARGVLIIDLEIENGGCEDGFAFC--GRLGGALDG-GFAQRDGGHTWAAVTLPAVLISASQGKRL 315
            VH +VLLV RG   +VQKVLTAQ AGA GV+I+D    +G CE     C  G      +G GFA +D    W  V +PAVL+ A  G+ L
Sbjct:  771 VHHRVLLVERGGCPLVQKVLTAQKAGALGVIIVD----DGRCEKFDQHCVPGSDKVLSEGQGFAAQDHPGDWRKVRIPAVLVLADDGEVL 856          
BLAST of mRNA_H-paniculata_contig521.12574.1 vs. uniprot
Match: A0A0U2T948_9MAXI (Pradc1-like isoform 2 n=1 Tax=Tortanus forcipatus TaxID=197020 RepID=A0A0U2T948_9MAXI)

HSP 1 Score: 51.2 bits (121), Expect = 1.830e-5
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 1
Query:   13 VPND--CRSGLL-NAEDVHGQVLLVNRGEVSIVQKVLTAQAAGARGVLIIDLEIEN 171
            VP D  C  G + N ED+ G++ L++RG+ S V KV+ A+ AGARGV+I D + EN
Sbjct:   80 VPTDPACGCGYIRNQEDIEGRIALIDRGDCSFVSKVVRAEEAGARGVIITDQDAEN 135          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig521.12574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FPJ4_ECTSI9.510e-2658.54Vacuolar sorting receptor, putative (ISS) n=1 Tax=... [more]
A0A482SJ43_9ARCH2.400e-1339.25PA domain-containing protein n=1 Tax=archaeon TaxI... [more]
A0A6G0W7Z3_9STRA4.290e-1337.14PA domain-containing protein n=1 Tax=Aphanomyces e... [more]
A0A7S1C5X9_9STRA9.410e-1345.28Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A2R5GKD5_9STRA1.080e-1138.74PA domain-containing protein n=1 Tax=Hondaea ferme... [more]
D8LI37_ECTSI5.160e-837.14PA domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A7S1XPP5_9STRA1.280e-746.67Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A0U2T948_9MAXI1.830e-548.21Pradc1-like isoform 2 n=1 Tax=Tortanus forcipatus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig521contigH-paniculata_contig521:29604..30215 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue7.3e-07
Seed eggNOG ortholog2880.D8LI37
Hectar predicted targeting categoryother localisation
EggNOG OGs29K29@1,2RTB6@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930518.64773-CDS-H-paniculata_contig521:29603..298281622930518.64773-CDS-H-paniculata_contig521:29603..29828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig521 29604..29828 -
1691481328.633974-CDS-H-paniculata_contig521:29603..298281691481328.633974-CDS-H-paniculata_contig521:29603..29828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig521 29604..29828 -
1622930518.6621974-CDS-H-paniculata_contig521:30125..302151622930518.6621974-CDS-H-paniculata_contig521:30125..30215Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig521 30126..30215 -
1691481328.643441-CDS-H-paniculata_contig521:30125..302151691481328.643441-CDS-H-paniculata_contig521:30125..30215Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig521 30126..30215 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig521.12574.1prot_H-paniculata_contig521.12574.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig521 29604..30215 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig521.12574.1

>prot_H-paniculata_contig521.12574.1 ID=prot_H-paniculata_contig521.12574.1|Name=mRNA_H-paniculata_contig521.12574.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
LVYAVPNDCRSGLLNAEDVHGQVLLVNRGEVSIVQKVLTAQAAGARGVLI
IDLEIENGGCEDGFAFCGRLGGALDGGFAQRDGGHTWAAVTLPAVLISAS
QGKRL
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mRNA from alignment at H-paniculata_contig521:29604..30215-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig521.12574.1 ID=mRNA_H-paniculata_contig521.12574.1|Name=mRNA_H-paniculata_contig521.12574.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=612bp|location=Sequence derived from alignment at H-paniculata_contig521:29604..30215- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTAGTTTACGCCGTGCCGAACGACTGCCGATCGGGGCTGCTCAACGCCGA GGATGTTCATGGTCAAGTTTTGCTGGTCAATAGGGGCGAGGTACGCACAG CGGTAGGCACAGCGAAGACAGACGCGATTGACAGTCGCCCAGTTCTGCGA GAACATCACTCGCCTATTCTATAGACAGCGTCGCAAAACCGCGTTGCTCT GAATATTTTTTCAAGTTTCTTCATCATGAGTTGTCTCGGATCATGTTCAG AGTTGGTCGTTCTCTCACGCTCTTCGATTATTTTCTCGAGCGCAGAACCC GCACGAGTTCGTCCAAAGGACGACTATTGCTATGACTCCTGGTCATTTTC GATAACTGGGTAAAACACTGTTTATTCCCTGTAACAGGTGTCCATTGTAC AGAAGGTGCTGACCGCACAGGCCGCCGGCGCAAGAGGAGTCCTAATAATA GATCTAGAGATAGAGAACGGGGGTTGCGAAGACGGCTTTGCGTTCTGTGG AAGATTAGGGGGGGCGCTGGACGGAGGCTTTGCACAGCGGGACGGCGGTC ATACTTGGGCCGCTGTGACGCTTCCCGCTGTGCTGATTTCGGCTTCTCAA GGAAAGCGTTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig521:29604..30215-

>mRNA_H-paniculata_contig521.12574.1 ID=mRNA_H-paniculata_contig521.12574.1|Name=mRNA_H-paniculata_contig521.12574.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig521:29604..30215- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTAGTTTACGCCGTGCCGAACGACTGCCGATCGGGGCTGCTCAACGCCGA
GGATGTTCATGGTCAAGTTTTGCTGGTCAATAGGGGCGAGTTAGTTTACG
CCGTGCCGAACGACTGCCGATCGGGGCTGCTCAACGCCGAGGATGTTCAT
GGTCAAGTTTTGCTGGTCAATAGGGGCGAGGTGTCCATTGTACAGAAGGT
GCTGACCGCACAGGCCGCCGGCGCAAGAGGAGTCCTAATAATAGATCTAG
AGATAGAGAACGGGGGTTGCGAAGACGGCTTTGCGTTCTGTGGAAGATTA
GGGGGGGCGCTGGACGGAGGCTTTGCACAGCGGGACGGCGGTCATACTTG
GGCCGCTGTGACGCTTCCCGCTGTGCTGATTTCGGCTTCTCAAGGAAAGC
GTTTGGTGTCCATTGTACAGAAGGTGCTGACCGCACAGGCCGCCGGCGCA
AGAGGAGTCCTAATAATAGATCTAGAGATAGAGAACGGGGGTTGCGAAGA
CGGCTTTGCGTTCTGTGGAAGATTAGGGGGGGCGCTGGACGGAGGCTTTG
CACAGCGGGACGGCGGTCATACTTGGGCCGCTGTGACGCTTCCCGCTGTG
CTGATTTCGGCTTCTCAAGGAAAGCGTTTG
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