mRNA_H-paniculata_contig521.12572.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig521.12572.1
Unique NamemRNA_H-paniculata_contig521.12572.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig521.12572.1 vs. uniprot
Match: D7FPJ6_ECTSI (DUF667 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPJ6_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 5.920e-44
Identity = 83/129 (64.34%), Postives = 101/129 (78.29%), Query Frame = 2
Query:  413 YCPTSISASPIR--RPTAAPPRE*TLDKFFSFEVEIVDDSKQYRYIDVSNARSVAVITGDRALLPLEVGQGWQHLQIDLERMVRLAFGSIYLTTSQVTLLASARIAKVFFQSEPFSDFEMPPHLRAVPE 793
            + P + S++ +R  +P   P    TLDKFFSFEVEIVDD+K+YRYID+SN RSVA I  DRALLPL++  GWQ + IDLER VRL FGS YLTTSQVT+ ASAR+AK+FFQS+PFSD+E+P HLR V E
Sbjct:  182 FVPNTSSSTNMRLPKPRLRPDFLQTLDKFFSFEVEIVDDTKRYRYIDISNTRSVADIGDDRALLPLKLEDGWQRVNIDLERTVRLVFGSSYLTTSQVTVRASARVAKLFFQSQPFSDYELPSHLRVVAE 310          
BLAST of mRNA_H-paniculata_contig521.12572.1 vs. uniprot
Match: A0A1V9YI48_9STRA (DUF667 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YI48_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 7.150e-20
Identity = 41/96 (42.71%), Postives = 67/96 (69.79%), Query Frame = 2
Query:  482 LDKFFSFEVEIVDDSKQYRYIDVSNARSVAVITGDRALLPLEVGQGWQHLQIDLERMVRLAFGSIYLTTSQVTLLASARIAKVFFQSEPFSDFEMP 769
            LD FF+FE+E++D+ K+YR + ++NARS+A +      +PL  G+GWQ+  +DL+ +V  AFG+ ++ T Q+ L+AS R+ +VFFQ   +S  E+P
Sbjct:  101 LDAFFTFEIEVLDEKKEYRTLTITNARSLARVNASHVQMPLAFGKGWQYFYVDLQSVVHDAFGTQHVATVQLRLMASCRLLRVFFQDVKYSYAELP 196          
BLAST of mRNA_H-paniculata_contig521.12572.1 vs. uniprot
Match: A0A5D6Y0V0_9STRA (DUF667 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y0V0_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.310e-19
Identity = 45/103 (43.69%), Postives = 73/103 (70.87%), Query Frame = 2
Query:  479 TLDKFFSFEVEIVDDSKQYRYIDVSNARSVAVITGDRALLPLEVGQ---GWQHLQIDLERMVRLAFGSIYLTTSQVTLLASARIAKVFFQSEPFSDFEMPPHL 778
            +LD+FF+F++E++DD +QYR + V+NARS+A + G    LPL  G    GW++L +DL+++   AFG+ ++TT+ V +  + R+ +VFFQ E +SD E+P HL
Sbjct:  124 SLDQFFAFQLEVLDDKQQYRTLKVTNARSLARVEGASVQLPLAFGGPGGGWRYLCMDLQQLTAQAFGTQHVTTTHVRIGGNCRLLRVFFQDELYSDAELPAHL 226          
BLAST of mRNA_H-paniculata_contig521.12572.1 vs. uniprot
Match: W4G477_9STRA (DUF667 domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G477_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 9.300e-18
Identity = 42/101 (41.58%), Postives = 68/101 (67.33%), Query Frame = 2
Query:  482 LDKFFSFEVEIVDDSKQYRYIDVSNARSVAVITGDRALLPLEVGQG--WQHLQIDLERMVRLAFGSIYLTTSQVTLLASARIAKVFFQSEPFSDFEMPPHL 778
            LD +F+ ++E+VDD+K YR   ++N+RS+A +      +PL  G+G  W+H+ +D+ RM   AFG+ ++ T QVT+ A+ R+ +VFFQ   +SD E+PP L
Sbjct:   93 LDAYFALDIEVVDDTKTYRTFHITNSRSLARVQASACQMPLVFGKGGTWRHVCLDVHRMCLDAFGTHHVATVQVTVHATCRLLRVFFQDVDYSDAELPPML 193          
BLAST of mRNA_H-paniculata_contig521.12572.1 vs. uniprot
Match: A0A485LGF8_9STRA (Aste57867_21039 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LGF8_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 8.700e-17
Identity = 42/102 (41.18%), Postives = 70/102 (68.63%), Query Frame = 2
Query:  482 LDKFFSFEVEIVDDSKQYRYIDVSNARSVAVITGDRALLPLEVGQG---WQHLQIDLERMVRLAFGSIYLTTSQVTLLASARIAKVFFQSEPFSDFEMPPHL 778
            +D FF+FEVE++DD K YR   ++NARS+A +TG+   +PL  G+G   W+++ +D++RM   AFG+ ++ T QV + A+ R+ + +FQ   +SD E+P +L
Sbjct:  226 MDAFFAFEVEMLDDKKIYREFHITNARSLARVTGNACQMPLAFGRGGSGWRYICLDVQRMCLEAFGTQHVATVQVRIHATCRLLRAYFQEIEYSDAELPSYL 327          
BLAST of mRNA_H-paniculata_contig521.12572.1 vs. uniprot
Match: G4YH75_PHYSP (DUF667 domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4YH75_PHYSP)

HSP 1 Score: 84.7 bits (208), Expect = 5.530e-16
Identity = 39/101 (38.61%), Postives = 66/101 (65.35%), Query Frame = 2
Query:  482 LDKFFSFEVEIVDDSKQYRYIDVSNARSVAVITGDRALLPLEVGQ--GWQHLQIDLERMVRLAFGSIYLTTSQVTLLASARIAKVFFQSEPFSDFEMPPHL 778
            +D F  F+VE++DDS+ YR   V+N RS+A +      LPL  G   GW++L +DL+ +   AFG+ ++TT++V +  + R+ ++FFQ E ++D ++P HL
Sbjct:  131 MDLFLEFQVEVLDDSQNYRVFTVTNTRSLARVEDTACQLPLAFGSHPGWRYLCMDLQDLTNQAFGTRHVTTTEVRIRGNCRLLRMFFQDERYADADLPAHL 231          
BLAST of mRNA_H-paniculata_contig521.12572.1 vs. uniprot
Match: A0A6B2LJY4_9EUKA (DUF667 domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LJY4_9EUKA)

HSP 1 Score: 79.0 bits (193), Expect = 2.930e-14
Identity = 38/96 (39.58%), Postives = 58/96 (60.42%), Query Frame = 2
Query:  482 LDKFFSFEVEIVDDSKQYRYIDVSNARSVAVITGDRALLPLEVGQGWQHLQIDLERMVRLAFGSIYLTTSQVTLLASARIAKVFFQSEPFSDFEMP 769
            +DKFFSFE++I+DD    R    SN +SV  +      LPL++  GW  +QIDL    + A+G+ YL T QV + A+ RI +++F  +  +D E+P
Sbjct:   83 VDKFFSFEIQILDDKSVRRRFRASNFQSVTRVRPSICTLPLQLDDGWNQIQIDLAHYTKRAYGTNYLQTLQVQIHANCRIRRIYFAEKIMTDEELP 178          
BLAST of mRNA_H-paniculata_contig521.12572.1 vs. uniprot
Match: A0A6G1S9M0_9ACAR (UPF0468 protein C16orf80 n=1 Tax=Aceria tosichella TaxID=561515 RepID=A0A6G1S9M0_9ACAR)

HSP 1 Score: 77.4 bits (189), Expect = 1.310e-13
Identity = 33/96 (34.38%), Postives = 61/96 (63.54%), Query Frame = 2
Query:  482 LDKFFSFEVEIVDDSKQYRYIDVSNARSVAVITGDRALLPLEVGQGWQHLQIDLERMVRLAFGSIYLTTSQVTLLASARIAKVFFQSEPFSDFEMP 769
            LD+FF+FE+EI+DD+K  R    SN ++   +      +PL++  GW H+ ++L    R A+G+ Y+ TS++T+ A+ R+ +++F    ++D E+P
Sbjct:   82 LDRFFTFEIEIIDDTKAKRRFRASNYQTRTRVKDFICTMPLKLESGWNHINLNLADFTRRAYGTNYVETSRITVNANCRLRRIYFADRQYTDEELP 177          
BLAST of mRNA_H-paniculata_contig521.12572.1 vs. uniprot
Match: A0A182RQX8_ANOFN (DUF667 domain-containing protein n=1 Tax=Anopheles funestus TaxID=62324 RepID=A0A182RQX8_ANOFN)

HSP 1 Score: 76.6 bits (187), Expect = 5.610e-13
Identity = 36/102 (35.29%), Postives = 63/102 (61.76%), Query Frame = 2
Query:  482 LDKFFSFEVEIVDDSKQYRYIDVSNARSVAVITGDRALLPLEVGQGWQHLQIDLERMVRLAFGSIYLTTSQVTLLASARIAKVFFQSEPFSDFEMPPHLRAV 787
            + KFFSFE++I+DD +  R +  SN +SV  +    A +P+ +  GW  +QI+L    R A+G+ Y+ T ++ + A+ RI +++F  + +++ E PP LR V
Sbjct:   83 MKKFFSFEIQILDDRQSLRRLRFSNYQSVTRVDNFSAFIPISLAPGWGQVQINLADFTRKAYGTNYVETVRLQIHANVRIKRIYFCDQLYTNDETPPDLRLV 184          
BLAST of mRNA_H-paniculata_contig521.12572.1 vs. uniprot
Match: A0A8D3B209_SCOMX (DUF667 domain-containing protein n=6 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A8D3B209_SCOMX)

HSP 1 Score: 74.3 bits (181), Expect = 1.990e-12
Identity = 33/102 (32.35%), Postives = 59/102 (57.84%), Query Frame = 2
Query:  482 LDKFFSFEVEIVDDSKQYRYIDVSNARSVAVITGDRALLPLEVGQGWQHLQIDLERMVRLAFGSIYLTTSQVTLLASARIAKVFFQSEPFSDFEMPPHLRAV 787
            L K+F+FEV+++DD    R    SN +S   ++     +P+ + +GW H+Q +L    R A+G+ Y+ T +V + A+ RI +VFF    +S+ E+P   + +
Sbjct:   83 LKKYFTFEVQVLDDKNVRRRFQASNYQSTTRVSPFMCTIPMRLDEGWSHIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVFFSDRLYSEDELPAGFKLI 184          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig521.12572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPJ6_ECTSI5.920e-4464.34DUF667 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A1V9YI48_9STRA7.150e-2042.71DUF667 domain-containing protein n=1 Tax=Thraustot... [more]
A0A5D6Y0V0_9STRA1.310e-1943.69DUF667 domain-containing protein n=1 Tax=Pythium b... [more]
W4G477_9STRA9.300e-1841.58DUF667 domain-containing protein n=4 Tax=Aphanomyc... [more]
A0A485LGF8_9STRA8.700e-1741.18Aste57867_21039 protein n=1 Tax=Aphanomyces stella... [more]
G4YH75_PHYSP5.530e-1638.61DUF667 domain-containing protein n=3 Tax=Phytophth... [more]
A0A6B2LJY4_9EUKA2.930e-1439.58DUF667 domain-containing protein n=1 Tax=Arcella i... [more]
A0A6G1S9M0_9ACAR1.310e-1334.38UPF0468 protein C16orf80 n=1 Tax=Aceria tosichella... [more]
A0A182RQX8_ANOFN5.610e-1335.29DUF667 domain-containing protein n=1 Tax=Anopheles... [more]
A0A8D3B209_SCOMX1.990e-1232.35DUF667 domain-containing protein n=6 Tax=Scophthal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig521contigH-paniculata_contig521:21608..23020 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue4.9e-24
Seed eggNOG ortholog2880.D7FPJ6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of cilium movement involved in cell motility
EggNOG OGsKOG3213@1,KOG3213@2759
Ec32 ortholog descriptionCilia/flagella-associated protein 20
Ec32 orthologEc-12_000830.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size793
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig521.12572.1prot_H-paniculata_contig521.12572.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig521 22372..22951 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930518.355074-UTR-H-paniculata_contig521:21607..218481622930518.355074-UTR-H-paniculata_contig521:21607..21848Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig521 21608..21848 -
1691481328.472946-UTR-H-paniculata_contig521:21607..218481691481328.472946-UTR-H-paniculata_contig521:21607..21848Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig521 21608..21848 -
1622930518.3844647-UTR-H-paniculata_contig521:22293..223711622930518.3844647-UTR-H-paniculata_contig521:22293..22371Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig521 22294..22371 -
1691481328.4885633-UTR-H-paniculata_contig521:22293..223711691481328.4885633-UTR-H-paniculata_contig521:22293..22371Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig521 22294..22371 -
1622930518.4242032-UTR-H-paniculata_contig521:22951..230201622930518.4242032-UTR-H-paniculata_contig521:22951..23020Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig521 22952..23020 -
1691481328.52784-UTR-H-paniculata_contig521:22951..230201691481328.52784-UTR-H-paniculata_contig521:22951..23020Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig521 22952..23020 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930518.401324-CDS-H-paniculata_contig521:22371..227331622930518.401324-CDS-H-paniculata_contig521:22371..22733Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig521 22372..22733 -
1691481328.5072706-CDS-H-paniculata_contig521:22371..227331691481328.5072706-CDS-H-paniculata_contig521:22371..22733Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig521 22372..22733 -
1622930518.412982-CDS-H-paniculata_contig521:22908..229511622930518.412982-CDS-H-paniculata_contig521:22908..22951Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig521 22909..22951 -
1691481328.5182269-CDS-H-paniculata_contig521:22908..229511691481328.5182269-CDS-H-paniculata_contig521:22908..22951Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig521 22909..22951 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig521.12572.1

>prot_H-paniculata_contig521.12572.1 ID=prot_H-paniculata_contig521.12572.1|Name=mRNA_H-paniculata_contig521.12572.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp
MVYEDLPPIAAAIQACSVLQEGNEASVFDDEELSIQVVELLGRRCSVSFP
CSSILRFLCLHIKVSAFLFFVFQVLNMFRRQRQQRRRNDTQLTPPFICPK
GLVLLDYRCACFGSLLPHLHICLTHPPADRCPPS*
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mRNA from alignment at H-paniculata_contig521:21608..23020-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig521.12572.1 ID=mRNA_H-paniculata_contig521.12572.1|Name=mRNA_H-paniculata_contig521.12572.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1413bp|location=Sequence derived from alignment at H-paniculata_contig521:21608..23020- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGGAGATCGCCTGGAGGCGACGTCGTGGAATATTGATGCGATTCTTCC CCCATCCGCCGATCCAGGGATGGTCTACGAAGATCTCCCACCCATCGCCG CTGCCATACAAGGTGCAGTACTACTCGTATGGATACAGTGTGCGATAGTG TAGTACAACATAAGGAGTTGGGAAATTTTCTAGTGTAGCTTGAGGTAGAC GTATAACAGGCGTATCTAATGGGCTGGATTCCAACTTAACGACTGATGAG TGCAATTTTTTTCCCTGTCGTTCTTGACTCCGCATAGCATGCAGTGTTTT GCAAGAGGGTAACGAAGCATCAGTTTTTGATGACGAAGAGCTTTCAATTC AGGTGGTGGAACTGCTTGGCAGGAGGTGCTCCGTTTCATTCCCATGCAGC TCCATCTTACGATTTCTGTGTCTTCATATCAAGGTTAGTGCGTTCTTGTT CTTCGTATTTCAGGTATTGAACATGTTTCGGAGACAGAGGCAACAACGCC GGCGGAACGATACGCAATTGACGCCTCCTTTTATTTGTCCGAAGGGATTA GTTCTTCTCGATTACAGGTGTGCTTGCTTCGGTTCTTTACTGCCCCACCT CCATATCTGCCTCACCCATCCGCCGGCCGACCGCTGCCCCCCCTCGTGAA TAGACGCTGGATAAGTTCTTTTCGTTTGAGGTGGAGATCGTCGACGACAG CAAACAATATCGGTATATAGATGTGAGGTGAGATAATTTAATCAGAACCG TCCATATTCGGTGCAATAAATCGAGATTTAATCTTGTGCTTGTCAACAGT TTCCCTTGTTTATTGCCTCGCTGCAACTGCTAACCCCGATCATATACATC CATGCCGAACTTTTACAACTGTCAGCACGAAGAGATATCGGCTTCGTGGG GAGGGACAAACATGGTGCGTGGGGTGTAGGTTCACGATATGCTTAAAAAG TAATGTACCTATTACAGCATTTCGCAGACCTTTCGCCACTCTCGCAAGGG TCCCTCGAATGATAAGAAGTGAACTTACCTGAGTTTTGCAAAAGAAATTG TTTCGAGATTTCGCTCAAGAAATGTGTCACAACTATCTATCGGGCCATAC TGAAAGGCAGGGCGCTCCAGCGCATATCTATTCCCAGCCTTGTCCGTGCC CACCCCTGATGATGCATGCCAGCAATGCTCGGAGCGTGGCCGTCATCACA GGAGACCGGGCCCTCCTACCCCTGGAAGTAGGTCAGGGATGGCAGCACCT ACAAATCGACCTGGAGCGAATGGTACGTCTGGCATTTGGGAGTATCTACC TCACCACGTCGCAGGTCACACTTCTGGCGAGCGCAAGGATAGCCAAGGTT TTCTTCCAGAGCGAGCCTTTTTCGGATTTTGAGATGCCCCCTCACCTTCG GGCCGTTCCCGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig521:21608..23020-

>mRNA_H-paniculata_contig521.12572.1 ID=mRNA_H-paniculata_contig521.12572.1|Name=mRNA_H-paniculata_contig521.12572.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig521:21608..23020- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCTACGAAGATCTCCCACCCATCGCCGCTGCCATACAAGATGGTCT
ACGAAGATCTCCCACCCATCGCCGCTGCCATACAAGCATGCAGTGTTTTG
CAAGAGGGTAACGAAGCATCAGTTTTTGATGACGAAGAGCTTTCAATTCA
GGTGGTGGAACTGCTTGGCAGGAGGTGCTCCGTTTCATTCCCATGCAGCT
CCATCTTACGATTTCTGTGTCTTCATATCAAGGTTAGTGCGTTCTTGTTC
TTCGTATTTCAGGTATTGAACATGTTTCGGAGACAGAGGCAACAACGCCG
GCGGAACGATACGCAATTGACGCCTCCTTTTATTTGTCCGAAGGGATTAG
TTCTTCTCGATTACAGGTGTGCTTGCTTCGGTTCTTTACTGCCCCACCTC
CATATCTGCCTCACCCATCCGCCGGCCGACCGCTGCCCCCCCTCGTGACA
TGCAGTGTTTTGCAAGAGGGTAACGAAGCATCAGTTTTTGATGACGAAGA
GCTTTCAATTCAGGTGGTGGAACTGCTTGGCAGGAGGTGCTCCGTTTCAT
TCCCATGCAGCTCCATCTTACGATTTCTGTGTCTTCATATCAAGGTTAGT
GCGTTCTTGTTCTTCGTATTTCAGGTATTGAACATGTTTCGGAGACAGAG
GCAACAACGCCGGCGGAACGATACGCAATTGACGCCTCCTTTTATTTGTC
CGAAGGGATTAGTTCTTCTCGATTACAGGTGTGCTTGCTTCGGTTCTTTA
CTGCCCCACCTCCATATCTGCCTCACCCATCCGCCGGCCGACCGCTGCCC
CCCCTCGTGA
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