mRNA_H-paniculata_contig52045.12563.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig52045.12563.1
Unique NamemRNA_H-paniculata_contig52045.12563.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig52045.12563.1 vs. uniprot
Match: A0A6H5JUC6_9PHAE (TOPEUc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC6_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 2.400e-44
Identity = 81/105 (77.14%), Postives = 86/105 (81.90%), Query Frame = 1 
Query:    1 QIATAVWIIDKLALRVGGEKGDDEADTVGCCSLRVEHLTIRDASGPSGEPIHEIELEFLGKDSMKFKETIDFDKYEAIGLRVFKNLQQFCKAKRQSEEVFDYLDP 315
            QIATAVWIIDKLALRVGGEKG DEADTVGCCSLR EHLT    +       +EI+LEFLGKDSM FKETIDFD+Y  +G RVFKNLQ FCK KRQSEEVFDYLDP
Sbjct:  676 QIATAVWIIDKLALRVGGEKGQDEADTVGCCSLRTEHLTFHATN-------NEIDLEFLGKDSMLFKETIDFDRYGDVGRRVFKNLQAFCKGKRQSEEVFDYLDP 773
[Close]
BLAST of mRNA_H-paniculata_contig52045.12563.1 vs. uniprot
Match: D7G042_ECTSI (TOPEUc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G042_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 2.490e-44
Identity = 81/105 (77.14%), Postives = 86/105 (81.90%), Query Frame = 1 
Query:    1 QIATAVWIIDKLALRVGGEKGDDEADTVGCCSLRVEHLTIRDASGPSGEPIHEIELEFLGKDSMKFKETIDFDKYEAIGLRVFKNLQQFCKAKRQSEEVFDYLDP 315
            QIATAVWIIDKLALRVGGEKG DEADTVGCCSLR EHLT    +       +EI+LEFLGKDSM FKETIDFD+Y  +G RVFKNLQ FCK KRQSEEVFDYLDP
Sbjct:  624 QIATAVWIIDKLALRVGGEKGQDEADTVGCCSLRTEHLTFHATN-------NEIDLEFLGKDSMLFKETIDFDRYGDVGRRVFKNLQAFCKGKRQSEEVFDYLDP 721
[Close]
BLAST of mRNA_H-paniculata_contig52045.12563.1 vs. uniprot
Match: A0A7S3XV41_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV41_HETAK)

HSP 1 Score: 143 bits (360), Expect = 1.780e-37
Identity = 72/105 (68.57%), Postives = 83/105 (79.05%), Query Frame = 1 
Query:    1 QIATAVWIIDKLALRVGGEKGDDEADTVGCCSLRVEHLTIRDASGPSGEPIHEIELEFLGKDSMKFKETIDFDKYEAIGLRVFKNLQQFCKAKRQSEEVFDYLDP 315
            QIATA+WIID LALRVGGEKG+DEADTVGCCSLRVEHL   D SG      + +ELEFLGKDSM FK+ IDF KY  +G RVFKNL +FC+ K++SE+VFD L P
Sbjct:  466 QIATAMWIIDVLALRVGGEKGEDEADTVGCCSLRVEHLRF-DTSGDEARK-YTLELEFLGKDSMLFKQEIDFGKYGKVGRRVFKNLVEFCQKKKRSEDVFDQLTP 568
[Close]
BLAST of mRNA_H-paniculata_contig52045.12563.1 vs. uniprot
Match: A0A7S2WTQ7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTQ7_9STRA)

HSP 1 Score: 142 bits (357), Expect = 4.230e-37
Identity = 65/105 (61.90%), Postives = 82/105 (78.10%), Query Frame = 1 
Query:    1 QIATAVWIIDKLALRVGGEKGDDEADTVGCCSLRVEHLTIRDASGPSGEPIHEIELEFLGKDSMKFKETIDFDKYEAIGLRVFKNLQQFCKAKRQSEEVFDYLDP 315
            Q+ATA+W+ID LALRVGGEKG+DEADTVGCCSLRVEH+      G  G+  H+IELEFLGKDSM++KET DF +Y  +G++VF+N   FCK K+  ++V D LDP
Sbjct:  430 QLATAMWVIDILALRVGGEKGEDEADTVGCCSLRVEHIKF----GQEGQGPHDIELEFLGKDSMQYKETTDFSRYGEVGIQVFQNFVSFCKKKKPDQQVLDQLDP 530
[Close]
BLAST of mRNA_H-paniculata_contig52045.12563.1 vs. uniprot
Match: A0A836C9X0_9STRA (DNA topoisomerase I n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9X0_9STRA)

HSP 1 Score: 138 bits (348), Expect = 5.890e-36
Identity = 67/105 (63.81%), Postives = 82/105 (78.10%), Query Frame = 1 
Query:    1 QIATAVWIIDKLALRVGGEKGDDEADTVGCCSLRVEHLTIRDASGPSGEPIHEIELEFLGKDSMKFKETIDFDKYEAIGLRVFKNLQQFCKAKRQSEEVFDYLDP 315
            Q+ATA+W+IDKLALRVGGEKG+DEADTVGCC+LRVEH+T     GP+G    E+ELEFLGKDSM FK+ IDF  Y  IG +VF NL  FCK ++ +E+VF  +DP
Sbjct:  331 QLATAMWLIDKLALRVGGEKGEDEADTVGCCTLRVEHMTF----GPAGT--REMELEFLGKDSMLFKQNIDFTAYGDIGSKVFDNLTAFCKGRKPAEQVFQKIDP 429
[Close]
BLAST of mRNA_H-paniculata_contig52045.12563.1 vs. uniprot
Match: A0A4D9D5J1_9STRA (TOPEUc domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5J1_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.030e-35
Identity = 70/109 (64.22%), Postives = 82/109 (75.23%), Query Frame = 1 
Query:    1 QIATAVWIIDKLALRVGGEKGDDEADTVGCCSLRVEHLT----IRDASGPSGEPIHEIELEFLGKDSMKFKETIDFDKYEAIGLRVFKNLQQFCKAKRQSEEVFDYLDP 315
            QIATA+WIIDKLALRVGGEKG+DEADTVGCCSLR+EHL     + D    SG   +EIELEFLGKDSM FK+TIDF  Y   G +VFKNL+ F K K+  ++VF+ L P
Sbjct:  502 QIATAMWIIDKLALRVGGEKGEDEADTVGCCSLRLEHLRFPPPVDDGGESSGAKQYEIELEFLGKDSMLFKQTIDFASYGENGKQVFKNLRHFVKDKKPDQDVFEMLTP 610
[Close]
BLAST of mRNA_H-paniculata_contig52045.12563.1 vs. uniprot
Match: A0A7S1TRD4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRD4_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.400e-35
Identity = 63/105 (60.00%), Postives = 83/105 (79.05%), Query Frame = 1 
Query:    1 QIATAVWIIDKLALRVGGEKGDDEADTVGCCSLRVEHLTIRDASGPSGEPIHEIELEFLGKDSMKFKETIDFDKYEAIGLRVFKNLQQFCKAKRQSEEVFDYLDP 315
            Q+ATA+W+ID  ALRVGGEKG+DEADTVGCCSLRVEH T    S  +      ++LEFLGKDSM+FK+TIDF  Y  +GL+V +N++ FCK KR++E+VF++L+P
Sbjct:  257 QMATAMWLIDIYALRVGGEKGEDEADTVGCCSLRVEHFTFSTQSETA------VDLEFLGKDSMRFKQTIDFANYGNVGLKVLRNIKDFCKGKRKNEDVFEFLNP 355
[Close]
BLAST of mRNA_H-paniculata_contig52045.12563.1 vs. uniprot
Match: A0A812WTB2_SYMMI (TOP1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WTB2_SYMMI)

HSP 1 Score: 133 bits (335), Expect = 2.270e-35
Identity = 67/107 (62.62%), Postives = 82/107 (76.64%), Query Frame = 1 
Query:    1 QIATAVWIIDKLALRVGGEKGDDEADTVGCCSLRVEHLTI--RDASGPSGEPIHEIELEFLGKDSMKFKETIDFDKYEAIGLRVFKNLQQFCKAKRQSEEVFDYLDP 315
            Q+ TA+W+ID LALRVGGEKG+DEADTVGCCSLRVEH+T   RD+SG       EIELEFLGKDSM FK+TI+F  Y  IG  V++NL+ FC  K+ +E+VF+ L P
Sbjct:   42 QLGTAMWVIDVLALRVGGEKGEDEADTVGCCSLRVEHVTFIPRDSSGAES---FEIELEFLGKDSMLFKQTINFATYGDIGKLVYRNLKSFCAGKKAAEQVFNTLTP 145
[Close]
BLAST of mRNA_H-paniculata_contig52045.12563.1 vs. uniprot
Match: A0A7S2CY07_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CY07_9STRA)

HSP 1 Score: 136 bits (342), Expect = 4.810e-35
Identity = 69/107 (64.49%), Postives = 82/107 (76.64%), Query Frame = 1 
Query:    1 QIATAVWIIDKLALRVGGEKGDDEADTVGCCSLRVEHLTIRDASGPSGEPIHEIELEFLGKDSMKFKETIDF--DKYEAIGLRVFKNLQQFCKAKRQSEEVFDYLDP 315
            Q+ATA+W+ID LALRVGGEKGDDEADTVGCCSLRVEHL      G   +  HEIELEFLGKDSM +KET DF  ++Y   G +V+KNL QFCK K+Q ++V D L+P
Sbjct:  468 QLATAMWVIDVLALRVGGEKGDDEADTVGCCSLRVEHLHC----GLPEQGPHEIELEFLGKDSMLYKETTDFGREEYGDTGKKVYKNLIQFCKGKKQEQQVLDLLNP 570
[Close]
BLAST of mRNA_H-paniculata_contig52045.12563.1 vs. uniprot
Match: A0A7R9YDN3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDN3_9STRA)

HSP 1 Score: 135 bits (340), Expect = 8.140e-35
Identity = 64/105 (60.95%), Postives = 83/105 (79.05%), Query Frame = 1 
Query:    1 QIATAVWIIDKLALRVGGEKGDDEADTVGCCSLRVEHLTIRDASGPSGEPIHEIELEFLGKDSMKFKETIDFDKYEAIGLRVFKNLQQFCKAKRQSEEVFDYLDP 315
            QIATA+W+ID  ALRVGGEKG+DEADTVGCCSLR+EH T  + S        +++LEFLGKDSM+FK+TIDF  Y  IG++V +NL++F + KR+SE+VFD L+P
Sbjct:  385 QIATAMWLIDIYALRVGGEKGEDEADTVGCCSLRLEHFTFHEDSES------QVDLEFLGKDSMRFKQTIDFSTYGDIGMKVLRNLKEFMRGKRKSEDVFDRLNP 483
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig52045.12563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUC6_9PHAE2.400e-4477.14TOPEUc domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G042_ECTSI2.490e-4477.14TOPEUc domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S3XV41_HETAK1.780e-3768.57Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2WTQ7_9STRA4.230e-3761.90Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A836C9X0_9STRA5.890e-3663.81DNA topoisomerase I n=1 Tax=Tribonema minus TaxID=... [more]
A0A4D9D5J1_9STRA1.030e-3564.22TOPEUc domain-containing protein n=2 Tax=Monodopsi... [more]
A0A7S1TRD4_9STRA1.400e-3560.00Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A812WTB2_SYMMI2.270e-3562.62TOP1 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A7S2CY07_9STRA4.810e-3564.49Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9YDN3_9STRA8.140e-3560.95Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig52045contigH-paniculata_contig52045:290..604 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.9
Seed ortholog evalue2.1e-38
Seed eggNOG ortholog2880.D7G042
Preferred nameTOP1
KEGG koko:K03163
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000228,GO:0000932,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001067,GO:0001650,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0003697,GO:0003824,GO:0003916,GO:0003917,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006265,GO:0006325,GO:0006338,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007059,GO:0007623,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0009058,GO:0009059,GO:0009330,GO:0009987,GO:0010468,GO:0012501,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016853,GO:0017076,GO:0018105,GO:0018193,GO:0018209,GO:0019222,GO:0019538,GO:0019904,GO:0030554,GO:0031298,GO:0031974,GO:0031981,GO:0032501,GO:0032553,GO:0032555,GO:0032559,GO:0032922,GO:0032991,GO:0032993,GO:0034641,GO:0034645,GO:0035639,GO:0035770,GO:0036094,GO:0036211,GO:0036464,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043565,GO:0043596,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044454,GO:0044464,GO:0046483,GO:0048511,GO:0050789,GO:0050896,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097100,GO:0097159,GO:0097367,GO:0140096,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901576,GO:1990837,GO:1990904
EggNOG free text desc.DNA topoisomerase type I activity
EggNOG OGsCOG3569@1,KOG0981@2759
EC5.99.1.2
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032
Exons1
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930517.315238-CDS-H-paniculata_contig52045:289..6041622930517.315238-CDS-H-paniculata_contig52045:289..604Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52045 290..604 +
1691481327.9400713-CDS-H-paniculata_contig52045:289..6041691481327.9400713-CDS-H-paniculata_contig52045:289..604Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52045 290..604 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig52045.12563.1prot_H-paniculata_contig52045.12563.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig52045 290..604 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig52045.12563.1

>prot_H-paniculata_contig52045.12563.1 ID=prot_H-paniculata_contig52045.12563.1|Name=mRNA_H-paniculata_contig52045.12563.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
QIATAVWIIDKLALRVGGEKGDDEADTVGCCSLRVEHLTIRDASGPSGEP
IHEIELEFLGKDSMKFKETIDFDKYEAIGLRVFKNLQQFCKAKRQSEEVF
DYLDP
back to top

mRNA from alignment at H-paniculata_contig52045:290..604+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig52045.12563.1 ID=mRNA_H-paniculata_contig52045.12563.1|Name=mRNA_H-paniculata_contig52045.12563.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=315bp|location=Sequence derived from alignment at H-paniculata_contig52045:290..604+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATCGCAACAGCTGTGTGGATTATTGACAAGCTGGCGCTCCGTGTGGG
CGGAGAGAAGGGCGATGATGAGGCGGACACGGTGGGTTGCTGTTCTCTCC
GCGTGGAGCACCTCACCATCCGAGACGCGTCGGGGCCAAGTGGGGAGCCG
ATTCACGAGATTGAGCTGGAGTTTTTGGGTAAGGACTCGATGAAGTTTAA
GGAGACGATCGACTTCGACAAGTACGAGGCGATTGGGCTGCGCGTGTTCA
AAAACTTGCAACAGTTCTGCAAGGCAAAGCGTCAATCGGAGGAAGTGTTC
GACTACCTGGACCCA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig52045:290..604+

>mRNA_H-paniculata_contig52045.12563.1 ID=mRNA_H-paniculata_contig52045.12563.1|Name=mRNA_H-paniculata_contig52045.12563.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig52045:290..604+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATCGCAACAGCTGTGTGGATTATTGACAAGCTGGCGCTCCGTGTGGG
CGGAGAGAAGGGCGATGATGAGGCGGACACGGTGGGTTGCTGTTCTCTCC
GCGTGGAGCACCTCACCATCCGAGACGCGTCGGGGCCAAGTGGGGAGCCG
ATTCACGAGATTGAGCTGGAGTTTTTGGGTAAGGACTCGATGAAGTTTAA
GGAGACGATCGACTTCGACAAGTACGAGGCGATTGGGCTGCGCGTGTTCA
AAAACTTGCAACAGTTCTGCAAGGCAAAGCGTCAATCGGAGGAAGTGTTC
GACTACCTGGACCCACAGATCGCAACAGCTGTGTGGATTATTGACAAGCT
GGCGCTCCGTGTGGGCGGAGAGAAGGGCGATGATGAGGCGGACACGGTGG
GTTGCTGTTCTCTCCGCGTGGAGCACCTCACCATCCGAGACGCGTCGGGG
CCAAGTGGGGAGCCGATTCACGAGATTGAGCTGGAGTTTTTGGGTAAGGA
CTCGATGAAGTTTAAGGAGACGATCGACTTCGACAAGTACGAGGCGATTG
GGCTGCGCGTGTTCAAAAACTTGCAACAGTTCTGCAAGGCAAAGCGTCAA
TCGGAGGAAGTGTTCGACTACCTGGACCCA
back to top