prot_H-paniculata_contig52045.12563.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig52045.12563.1
Unique Name	prot_H-paniculata_contig52045.12563.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	105

Homology

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BLAST of mRNA_H-paniculata_contig52045.12563.1 vs. uniprot
Match: A0A6H5JUC6_9PHAE (TOPEUc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC6_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 2.400e-44
Identity = 81/105 (77.14%), Postives = 86/105 (81.90%), Query Frame = 0

Query:    1 QIATAVWIIDKLALRVGGEKGDDEADTVGCCSLRVEHLTIRDASGPSGEPIHEIELEFLGKDSMKFKETIDFDKYEAIGLRVFKNLQQFCKAKRQSEEVFDYLDP 105
            QIATAVWIIDKLALRVGGEKG DEADTVGCCSLR EHLT    +       +EI+LEFLGKDSM FKETIDFD+Y  +G RVFKNLQ FCK KRQSEEVFDYLDP
Sbjct:  676 QIATAVWIIDKLALRVGGEKGQDEADTVGCCSLRTEHLTFHATN-------NEIDLEFLGKDSMLFKETIDFDRYGDVGRRVFKNLQAFCKGKRQSEEVFDYLDP 773

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BLAST of mRNA_H-paniculata_contig52045.12563.1 vs. uniprot
Match: D7G042_ECTSI (TOPEUc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G042_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 2.490e-44
Identity = 81/105 (77.14%), Postives = 86/105 (81.90%), Query Frame = 0

Query:    1 QIATAVWIIDKLALRVGGEKGDDEADTVGCCSLRVEHLTIRDASGPSGEPIHEIELEFLGKDSMKFKETIDFDKYEAIGLRVFKNLQQFCKAKRQSEEVFDYLDP 105
            QIATAVWIIDKLALRVGGEKG DEADTVGCCSLR EHLT    +       +EI+LEFLGKDSM FKETIDFD+Y  +G RVFKNLQ FCK KRQSEEVFDYLDP
Sbjct:  624 QIATAVWIIDKLALRVGGEKGQDEADTVGCCSLRTEHLTFHATN-------NEIDLEFLGKDSMLFKETIDFDRYGDVGRRVFKNLQAFCKGKRQSEEVFDYLDP 721

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BLAST of mRNA_H-paniculata_contig52045.12563.1 vs. uniprot
Match: A0A7S3XV41_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV41_HETAK)

HSP 1 Score: 143 bits (360), Expect = 1.780e-37
Identity = 72/105 (68.57%), Postives = 83/105 (79.05%), Query Frame = 0

Query:    1 QIATAVWIIDKLALRVGGEKGDDEADTVGCCSLRVEHLTIRDASGPSGEPIHEIELEFLGKDSMKFKETIDFDKYEAIGLRVFKNLQQFCKAKRQSEEVFDYLDP 105
            QIATA+WIID LALRVGGEKG+DEADTVGCCSLRVEHL   D SG      + +ELEFLGKDSM FK+ IDF KY  +G RVFKNL +FC+ K++SE+VFD L P
Sbjct:  466 QIATAMWIIDVLALRVGGEKGEDEADTVGCCSLRVEHLRF-DTSGDEARK-YTLELEFLGKDSMLFKQEIDFGKYGKVGRRVFKNLVEFCQKKKRSEDVFDQLTP 568

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BLAST of mRNA_H-paniculata_contig52045.12563.1 vs. uniprot
Match: A0A7S2WTQ7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTQ7_9STRA)

HSP 1 Score: 142 bits (357), Expect = 4.230e-37
Identity = 65/105 (61.90%), Postives = 82/105 (78.10%), Query Frame = 0

Query:    1 QIATAVWIIDKLALRVGGEKGDDEADTVGCCSLRVEHLTIRDASGPSGEPIHEIELEFLGKDSMKFKETIDFDKYEAIGLRVFKNLQQFCKAKRQSEEVFDYLDP 105
            Q+ATA+W+ID LALRVGGEKG+DEADTVGCCSLRVEH+      G  G+  H+IELEFLGKDSM++KET DF +Y  +G++VF+N   FCK K+  ++V D LDP
Sbjct:  430 QLATAMWVIDILALRVGGEKGEDEADTVGCCSLRVEHIKF----GQEGQGPHDIELEFLGKDSMQYKETTDFSRYGEVGIQVFQNFVSFCKKKKPDQQVLDQLDP 530

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BLAST of mRNA_H-paniculata_contig52045.12563.1 vs. uniprot
Match: A0A836C9X0_9STRA (DNA topoisomerase I n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9X0_9STRA)

HSP 1 Score: 138 bits (348), Expect = 5.890e-36
Identity = 67/105 (63.81%), Postives = 82/105 (78.10%), Query Frame = 0

Query:    1 QIATAVWIIDKLALRVGGEKGDDEADTVGCCSLRVEHLTIRDASGPSGEPIHEIELEFLGKDSMKFKETIDFDKYEAIGLRVFKNLQQFCKAKRQSEEVFDYLDP 105
            Q+ATA+W+IDKLALRVGGEKG+DEADTVGCC+LRVEH+T     GP+G    E+ELEFLGKDSM FK+ IDF  Y  IG +VF NL  FCK ++ +E+VF  +DP
Sbjct:  331 QLATAMWLIDKLALRVGGEKGEDEADTVGCCTLRVEHMTF----GPAGT--REMELEFLGKDSMLFKQNIDFTAYGDIGSKVFDNLTAFCKGRKPAEQVFQKIDP 429

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BLAST of mRNA_H-paniculata_contig52045.12563.1 vs. uniprot
Match: A0A4D9D5J1_9STRA (TOPEUc domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5J1_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.030e-35
Identity = 70/109 (64.22%), Postives = 82/109 (75.23%), Query Frame = 0

Query:    1 QIATAVWIIDKLALRVGGEKGDDEADTVGCCSLRVEHLT----IRDASGPSGEPIHEIELEFLGKDSMKFKETIDFDKYEAIGLRVFKNLQQFCKAKRQSEEVFDYLDP 105
            QIATA+WIIDKLALRVGGEKG+DEADTVGCCSLR+EHL     + D    SG   +EIELEFLGKDSM FK+TIDF  Y   G +VFKNL+ F K K+  ++VF+ L P
Sbjct:  502 QIATAMWIIDKLALRVGGEKGEDEADTVGCCSLRLEHLRFPPPVDDGGESSGAKQYEIELEFLGKDSMLFKQTIDFASYGENGKQVFKNLRHFVKDKKPDQDVFEMLTP 610

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BLAST of mRNA_H-paniculata_contig52045.12563.1 vs. uniprot
Match: A0A7S1TRD4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRD4_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.400e-35
Identity = 63/105 (60.00%), Postives = 83/105 (79.05%), Query Frame = 0

Query:    1 QIATAVWIIDKLALRVGGEKGDDEADTVGCCSLRVEHLTIRDASGPSGEPIHEIELEFLGKDSMKFKETIDFDKYEAIGLRVFKNLQQFCKAKRQSEEVFDYLDP 105
            Q+ATA+W+ID  ALRVGGEKG+DEADTVGCCSLRVEH T    S  +      ++LEFLGKDSM+FK+TIDF  Y  +GL+V +N++ FCK KR++E+VF++L+P
Sbjct:  257 QMATAMWLIDIYALRVGGEKGEDEADTVGCCSLRVEHFTFSTQSETA------VDLEFLGKDSMRFKQTIDFANYGNVGLKVLRNIKDFCKGKRKNEDVFEFLNP 355

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BLAST of mRNA_H-paniculata_contig52045.12563.1 vs. uniprot
Match: A0A812WTB2_SYMMI (TOP1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WTB2_SYMMI)

HSP 1 Score: 133 bits (335), Expect = 2.270e-35
Identity = 67/107 (62.62%), Postives = 82/107 (76.64%), Query Frame = 0

Query:    1 QIATAVWIIDKLALRVGGEKGDDEADTVGCCSLRVEHLTI--RDASGPSGEPIHEIELEFLGKDSMKFKETIDFDKYEAIGLRVFKNLQQFCKAKRQSEEVFDYLDP 105
            Q+ TA+W+ID LALRVGGEKG+DEADTVGCCSLRVEH+T   RD+SG       EIELEFLGKDSM FK+TI+F  Y  IG  V++NL+ FC  K+ +E+VF+ L P
Sbjct:   42 QLGTAMWVIDVLALRVGGEKGEDEADTVGCCSLRVEHVTFIPRDSSGAES---FEIELEFLGKDSMLFKQTINFATYGDIGKLVYRNLKSFCAGKKAAEQVFNTLTP 145

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BLAST of mRNA_H-paniculata_contig52045.12563.1 vs. uniprot
Match: A0A7S2CY07_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CY07_9STRA)

HSP 1 Score: 136 bits (342), Expect = 4.810e-35
Identity = 69/107 (64.49%), Postives = 82/107 (76.64%), Query Frame = 0

Query:    1 QIATAVWIIDKLALRVGGEKGDDEADTVGCCSLRVEHLTIRDASGPSGEPIHEIELEFLGKDSMKFKETIDF--DKYEAIGLRVFKNLQQFCKAKRQSEEVFDYLDP 105
            Q+ATA+W+ID LALRVGGEKGDDEADTVGCCSLRVEHL      G   +  HEIELEFLGKDSM +KET DF  ++Y   G +V+KNL QFCK K+Q ++V D L+P
Sbjct:  468 QLATAMWVIDVLALRVGGEKGDDEADTVGCCSLRVEHLHC----GLPEQGPHEIELEFLGKDSMLYKETTDFGREEYGDTGKKVYKNLIQFCKGKKQEQQVLDLLNP 570

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BLAST of mRNA_H-paniculata_contig52045.12563.1 vs. uniprot
Match: A0A7R9YDN3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDN3_9STRA)

HSP 1 Score: 135 bits (340), Expect = 8.140e-35
Identity = 64/105 (60.95%), Postives = 83/105 (79.05%), Query Frame = 0

Query:    1 QIATAVWIIDKLALRVGGEKGDDEADTVGCCSLRVEHLTIRDASGPSGEPIHEIELEFLGKDSMKFKETIDFDKYEAIGLRVFKNLQQFCKAKRQSEEVFDYLDP 105
            QIATA+W+ID  ALRVGGEKG+DEADTVGCCSLR+EH T  + S        +++LEFLGKDSM+FK+TIDF  Y  IG++V +NL++F + KR+SE+VFD L+P
Sbjct:  385 QIATAMWLIDIYALRVGGEKGEDEADTVGCCSLRLEHFTFHEDSES------QVDLEFLGKDSMRFKQTIDFSTYGDIGMKVLRNLKEFMRGKRKSEDVFDRLNP 483

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig52045.12563.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig52045.12563.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JUC6_9PHAE	2.400e-44	77.14	TOPEUc domain-containing protein n=1 Tax=Ectocarpu...	[more]
D7G042_ECTSI	2.490e-44	77.14	TOPEUc domain-containing protein n=1 Tax=Ectocarpu...	[more]
A0A7S3XV41_HETAK	1.780e-37	68.57	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A7S2WTQ7_9STRA	4.230e-37	61.90	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A836C9X0_9STRA	5.890e-36	63.81	DNA topoisomerase I n=1 Tax=Tribonema minus TaxID=...	[more]
A0A4D9D5J1_9STRA	1.030e-35	64.22	TOPEUc domain-containing protein n=2 Tax=Monodopsi...	[more]
A0A7S1TRD4_9STRA	1.400e-35	60.00	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]
A0A812WTB2_SYMMI	2.270e-35	62.62	TOP1 protein n=1 Tax=Symbiodinium microadriaticum ...	[more]
A0A7S2CY07_9STRA	4.810e-35	64.49	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A7R9YDN3_9STRA	8.140e-35	60.95	Hypothetical protein (Fragment) n=1 Tax=Pinguiococ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001631	DNA topoisomerase I	PRINTS	PR00416	EUTPISMRASEI	coord: 24..38 score: 72.38 coord: 54..70 score: 39.29 coord: 1..20 score: 55.36
IPR014711	DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type	GENE3D	3.90.15.10		coord: 1..105 e-value: 7.1E-32 score: 112.6
IPR013500	DNA topoisomerase I, catalytic core, eukaryotic-type	PFAM	PF01028	Topoisom_I	coord: 1..104 e-value: 4.2E-35 score: 121.1
None	No IPR available	PANTHER	PTHR10290	DNA TOPOISOMERASE I	coord: 1..104
IPR011010	DNA breaking-rejoining enzyme, catalytic core	SUPERFAMILY	56349	DNA breaking-rejoining enzymes	coord: 1..104

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig52045	contig	H-paniculata_contig52045:290..604 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig52045.12563.1	mRNA_H-paniculata_contig52045.12563.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig52045 290..604 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig52045.12563.1 ID=prot_H-paniculata_contig52045.12563.1|Name=mRNA_H-paniculata_contig52045.12563.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
QIATAVWIIDKLALRVGGEKGDDEADTVGCCSLRVEHLTIRDASGPSGEP
IHEIELEFLGKDSMKFKETIDFDKYEAIGLRVFKNLQQFCKAKRQSEEVF
DYLDP

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001631	TopoI
IPR014711	TopoI_cat_a-hlx-sub_euk
IPR013500	TopoI_cat_euk
IPR011010	DNA_brk_join_enz