mRNA_H-paniculata_contig5199.12545.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5199.12545.1
Unique NamemRNA_H-paniculata_contig5199.12545.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5199.12545.1 vs. uniprot
Match: D7FRT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT6_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 1.530e-9
Identity = 55/146 (37.67%), Postives = 76/146 (52.05%), Query Frame = 1 
Query:    1 GAAWSFHLRSRVGMDVYDRDTLIKAVTLPEQG-AED--APPSAMRMFVKKEETSNRINVIISEHGEASGWLSGMTFLCCKQTVTASSEPVLPSIAHRGTDARGSPS---TRQVQLEGLRVGMQRPWGPEGVTGCGPRRVCLSASPV 420
            G  W+ +L    GMD+YDRD LI+AV+L   G A D  A  S MR+FV++E+    I+V IS+ G+A        + C K   TA   PV  ++     D  G+ +   +R V L G+R+G  RP+     T   P  V LSASP 
Sbjct:  424 GIVWAVYLGRSTGMDIYDRDELIRAVSLQGHGRAVDLAAQHSRMRIFVRREDNGG-ISVAISDTGQAEPGGCWRFWPCKKVGETADPSPVADTVIQNNDDFGGASAPAGSRTVWLGGVRIGRARPFPGRDGTFTYPAAVSLSASPT 568
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5199.12545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRT6_ECTSI1.530e-937.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5199contigH-paniculata_contig5199:2..4735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1894
Cds size1146
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930514.9588745-UTR-H-paniculata_contig5199:1..7101622930514.9588745-UTR-H-paniculata_contig5199:1..710Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5199 2..710 -
1691481326.8288028-UTR-H-paniculata_contig5199:1..7101691481326.8288028-UTR-H-paniculata_contig5199:1..710Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5199 2..710 -
1622930515.0259094-UTR-H-paniculata_contig5199:3871..38731622930515.0259094-UTR-H-paniculata_contig5199:3871..3873Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5199 3872..3873 -
1691481326.869003-UTR-H-paniculata_contig5199:3871..38731691481326.869003-UTR-H-paniculata_contig5199:3871..3873Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5199 3872..3873 -
1622930515.042273-UTR-H-paniculata_contig5199:4698..47351622930515.042273-UTR-H-paniculata_contig5199:4698..4735Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5199 4699..4735 -
1691481326.88291-UTR-H-paniculata_contig5199:4698..47351691481326.88291-UTR-H-paniculata_contig5199:4698..4735Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5199 4699..4735 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930514.9710622-CDS-H-paniculata_contig5199:710..15771622930514.9710622-CDS-H-paniculata_contig5199:710..1577Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5199 711..1577 -
1691481326.837116-CDS-H-paniculata_contig5199:710..15771691481326.837116-CDS-H-paniculata_contig5199:710..1577Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5199 711..1577 -
1622930514.98658-CDS-H-paniculata_contig5199:2061..21361622930514.98658-CDS-H-paniculata_contig5199:2061..2136Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5199 2062..2136 -
1691481326.8449984-CDS-H-paniculata_contig5199:2061..21361691481326.8449984-CDS-H-paniculata_contig5199:2061..2136Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5199 2062..2136 -
1622930514.9999626-CDS-H-paniculata_contig5199:2773..29441622930514.9999626-CDS-H-paniculata_contig5199:2773..2944Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5199 2774..2944 -
1691481326.8530557-CDS-H-paniculata_contig5199:2773..29441691481326.8530557-CDS-H-paniculata_contig5199:2773..2944Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5199 2774..2944 -
1622930515.0112205-CDS-H-paniculata_contig5199:3838..38711622930515.0112205-CDS-H-paniculata_contig5199:3838..3871Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5199 3839..3871 -
1691481326.8610666-CDS-H-paniculata_contig5199:3838..38711691481326.8610666-CDS-H-paniculata_contig5199:3838..3871Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5199 3839..3871 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5199.12545.1prot_H-paniculata_contig5199.12545.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5199 711..3871 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5199.12545.1

>prot_H-paniculata_contig5199.12545.1 ID=prot_H-paniculata_contig5199.12545.1|Name=mRNA_H-paniculata_contig5199.12545.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=382bp
MDVYDRDTLIKAVTLPEQGAEDAPPSAMRMFVKKEETSNRINVIISEHGE
ASGWLSGMTFLCCKQTVTASSEPVLPSIAHRGTDARGSPSTRQVQLEGLR
VGMQRPWGPEGVTGCGPRRVCLSASPVSSAASSPTNVRTPNDPDPEAIAR
MNMARALLESESVSAALGSSSRTDNFDDSYSTQPSSTMRDSGRIRDISRY
GSGSRQVEGGGISYLGLRGSNRNSALRPTVNISIASGHTLPSHRGRSVGL
EITAISSTRGGEVLSPISSTPVAQTASGFASPSSDTVGLDTTVPDAPVTA
PDARPPPAGDEAAAGGGDAMLPSSESPTMASSPLPARQLVGGIDTMGPAV
FHSLRDPQSPPHNEAPGTRATPNGEMLHRSE*
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mRNA from alignment at H-paniculata_contig5199:2..4735-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5199.12545.1 ID=mRNA_H-paniculata_contig5199.12545.1|Name=mRNA_H-paniculata_contig5199.12545.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4734bp|location=Sequence derived from alignment at H-paniculata_contig5199:2..4735- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCCGCCTGGTCGTTTCACCTTCGTTCGCGAGTAGGTAACCATATTGT
TTCTATTTTTTTTAACGTTCTATCCTTTTGGTTGTCACGTAGGTATAGCA
GTAAATACGACAGTACACAGGTGATCGGCACTAGGTATTGGTTTGTTCGG
AATGTTGCTTCTTCCTTCCTTGCTGAAAATAACGCAAGCCTACCGCCTTT
CCTTGATTAGCGAATCCACTCCAGTTTTTTGTTGTCAATACATGTGATTT
GAGTTATAACTATATTACAAAGTATTGGCTGAAGGGTTGTGCGCGTGCTG
TTTTCTAGCTCATCACCTGACCGTATCAAGCGTATGCTATTCGATATTAT
GGTAAGCCTTTTTAGCTGAGCATGTTTTCCGTGCGGTAGTGCTTTGGTGT
GGCCACGCAAGCAAGTTGAATAGAATTTTCCCTTCATAGACAGGATTGCC
AGAGAGGCTCCGATGCCCTCACGTGAAGTGGCATAATTTCTACCCCACAC
CTTTCGGAGGAGAATGGGGAGGGGGTTGCTCATGTTTTGCGTGCCTGCAT
TGTCAAAACATTGGCCACGCATCCTCTTGTGGAGGAGCAATGTTCTCAAA
GGAGTTATTGTCAACTGCCAACAGCTTTTCCTGGTCTACTAGAGGCAGTC
AAGAAAGGGTATTCCTACAAGCGCTTTTGCCACAGCAACCGTACGTGCCT
TTTCGGGCCTGTTTCTATCTCCAATACCGGAGGATGGGGGATAGGGGGTA
TTAATCCAGCTCCCCTTCACCCCGTCGTTGATGTCGGTTCGCCCACGCAT
AATAAACACGGAAACATTTCTCCACTCTCCCCCGAAACATTGCTTTCCCT
CGACTTTATCAGGCATGGACGTCTACGACCGCGATACACTGATCAAGGTG
AGAAGAAGACTCAAGAGTATGCCATTTTTTCTGCATTTATTGAAGAAAAC
ACGAGTGGTGAGCTTCGTGGCGACAGCCACACCATCACCAGGGTTCATTT
TATCATAATTGCGACTTGTCTTGGGCAACTGTTTGCGTCAGCAAGAGATG
TTCAAATCTTCGATGTCATCACCGAAGCTATGAGCTGGCGAGACCACGAA
AAGTGATCGTAATAGAAAGTCTACGACTATGGCGAACACAGCATTTCGTG
GCCGTAGAGACTAAATATCGACATCCGCTCTGACTTAGCCGCACCATATG
CCTTTGTTGTTGAATTGGACATTGCCATATTTATATTATTTGTACGCTTG
TGTGTCACCTTCTCTCTCGTGTTGTAAAAGTCTCGATACCGAGAATCAAT
CAACCTTGGTCAATAACAGGAATTTTTTAAGCCTTTCAGTTTTGTTTAGT
AATTATAAAATGGAGGATGACCCAGTCTTGCTGTACCTGTCGCCGTTTTT
TGCTGAGTTTTGACCTTTTGAAAACCTATGAAGACATTTTCAAATGGAAT
TCAGTCGCTACCATAGAAGCATGTCGCACTGGAACTGACGTGTGGCATGA
GCAACCAGTTGATGAAACTAGAGGCTACAGTATTTTCTTGCGCATTTTCC
TGTTGTTGCGCAATGCTTTGCTTGCTGCCAACAGGTATCTACGATACAAG
CTGGCATTGAAGGAGATTGAGTTTCTCAATTAAGAGATGGTGCTGCAGAT
AAACACGTTTCCTTGTTACGCATCTTATTGGGTGCTCATGTGCACACATC
TCAAGAGGTAAATGTGTCAATTAACAGTAACCGCGGTCTGTTGTCTGGCG
GTCTTTGCACTTGTGGTCCGTCCTCGAATTGATCCCCCAAGGCGGTTACT
CTGCCCGAGCAAGGGGCAGAAGATGCCCCCCCCTCGGCAATGCGCATGTT
CGTAAAAAAAGAAGAGACCTCCAACAGAATCAACGTTATCATCAGCGAGC
ATGGCGAGGCGTCGGGATGGCTCAGCGGCATGACATTCTTGTGTTGCAAA
CAAACGGTGACAGTGAGTGAGCCCAACCGTAAGATCGACGCAAGGGCCGC
CTTTGCATGCTGTGGTATCTTCAGGGGTTTGGGGCGGCGGGTGACGTATG
GGCGGCGTGGCATCACCACGGTTGCAGTACACGGCAAAGAACATGGGTAC
TTGGTACTGCAGGACAAAGTCGTTACATTGATCAAGTGTATGATGGCGTT
GGACCATGGGTATTACCCGTAGATCCTACTCTAGGCAATCAACGGGGTTC
TTGAACAGAGAGGTCAAGTGTAATGAATATGGCCTTGGTTTCTTAAATGA
AACAGCCTGTTACTGGCGCCTGTTCTACGTTCATATCTACCTTGCTACAG
TGGCTCTATAATCACCCACCTTTTTTTCAGGATGTCGCGTTATGGTCTTG
GCTATCATGAGATACGTTCAGCACCGTCTAATTCTTTGTTCTTCTCGCGT
GGTGTGCCTTGACGATTCATTAAGTGGAACGCTTCTAAAGGTTTTGTATA
TTGACTCTGCTGGATACTTTCGAAACAGCTCGTCGCACCATAACAACTGA
TTGGTGGTTAGGTCGATTGCCAATTTATGTTTCCGCACCAATGCGTGCGT
ATTCCACCTCCCGCTCCTTCATGTGTACGCACCCCTTTCCCGTATTCAGG
CGAGCTCTGAACCTGTTTTGCCCTCGATTGCCCACAGGGGTACGGATGCT
CGAGGCTCGCCCTCGACAAGACAGGTATGTGAGATACAGCTCCTGCCATC
TTTGGAAGATTCACGGGCAGCGGCAAAACTTGACATGGCTGTTTTTATTG
TTGTGTTTTTGTTGTTACCTTCACACTAGCATGTGCCACCTTGTTTGCCC
ATTGCATTGATCATCTGTTGGTCGGTACGGCGGGCGGGCGAAGGAGTGGA
TGGCTGCGTACCTTTTTGTGTCGCCGGCATCTGTTTTCGTGCGTCGATAA
TAGCAATGTCGAATCACAATCGATTCTATTTCAAGCCACAGCTTTTCACT
GAGGAATTATCGTTAGGGTTTTCTATCCCTATGTGAGCCATGCTTTGGTT
TGGGAGACTTTGCAGGGTTGAAACGACCACGCCACTCGTGGTACACCGGT
CAATGACAATATTATCTTGGCTCGTCATTACATAATATAACCTTTTTTGT
GCTCGAGAGTATGTCCATCCAGTATCCCACTTTTCGTGTTATATTGCGTT
GATCAAAGGTACAACTCGAAGGCCTGCGCGTTGGAATGCAACGTCCCTGG
GGTCCTGAAGGAGTCACGGGCTGTGGCCCGCGTCGCGTATGCCTCAGTGC
AAGTCCAGTCAGCTCCGCTGCCTCGAGCCCAACGAATGTACGTACGCCGA
ATGATCCAGACCCGGAAGCTATAGCCCGGATGAATATGGCCAGGGCTCTC
CTCGAAAGCGAGTCTGTGTCTGCCGCCCTAGGTTCGTCATCACGGACCGA
CAACTTTGACGACTCCTATTCAACGCAGCCATCCAGCACGATGCGTGATT
CAGGTCGTATACGTGATATAAGCCGGTACGGTTCTGGGTCCCGTCAGGTT
GAAGGCGGAGGAATTAGTTACTTGGGGCTGCGGGGGAGTAATCGGAACTC
AGCACTCAGACCGACCGTAAACATATCGATAGCATCGGGTCACACCTTAC
CAAGTCACCGTGGCCGGTCGGTTGGACTGGAAATCACAGCAATTTCTAGC
ACCCGCGGCGGTGAAGTGCTTTCTCCTATCTCATCGACGCCTGTAGCACA
GACAGCATCGGGTTTCGCATCGCCATCCTCCGACACAGTGGGATTGGATA
CGACGGTGCCTGATGCACCGGTAACGGCACCCGACGCCCGTCCCCCCCCC
GCCGGGGACGAGGCTGCTGCAGGCGGCGGTGATGCAATGCTTCCTAGTAG
TGAGTCGCCAACAATGGCATCATCTCCTCTTCCGGCGCGACAACTCGTGG
GAGGGATAGACACCATGGGACCGGCGGTCTTTCACAGCCTGAGAGACCCG
CAGAGTCCGCCTCATAACGAAGCTCCTGGAACGCGAGCGACGCCGAATGG
TGAAATGCTACATAGGTCGGAATAGCGGATGCGAGGCTACTAGATAGAAT
CGTGGTGTGGGGTAATTGGAATGTTGTTTACCTCCAAAACCTTGTCCGCT
GTATATCTAGCACACAGAGATGAAGAGGAACACGTCCAGCGTTTCGCTCT
TCCGAAGCACGGGAAAGGACGGCGTGGGACGGGGTAGAGAGGGTGTTGTA
TTTTCGATAGCATATGTCCTGTTGCGGCAATACAAGCTGGTGGCATTCCT
ACAGCGCGCTAAAAAGGAGTATGAAGCCCCCCCGCTGCGCCGGGAGGGTG
TGTTTTGTTGCCTCTGCAGTACCACAAGTGGGGTGATTGCCGCAGAAATA
TGTGCATGCTAGAAGAGTTTGGGCACTTTTTGCGGGGAAGAACGGATGCG
CAAGCAAAGTCATGTTCCACTAGAGATGGCATCTACGGGGATTGTATGAG
GGTGCGTAAAACCCAGGTTCGATTGCAGTTTAAAAAGGAAGTGGTTAGGT
CTACAAGGTACTGGCTTACCGAATCTTGATCTGTGCAGCTCATCTATGGG
GTGAACCTCCTTAGACATTTCGAAATGCAGTCGCAAGTTCATCTTGAGCA
GATTTGATGCAACCTATGTTGGTTTGATGATTCCGCAAGTGGCAAAAGAC
AGTTGGATCCAAGTTATTATTCTGTTCAACCTTTCCCGGAGGTAGGATCT
TTTGTCGGGGTATTCTACTTCTTTCCAATGACGT
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Coding sequence (CDS) from alignment at H-paniculata_contig5199:2..4735-

>mRNA_H-paniculata_contig5199.12545.1 ID=mRNA_H-paniculata_contig5199.12545.1|Name=mRNA_H-paniculata_contig5199.12545.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2292bp|location=Sequence derived from alignment at H-paniculata_contig5199:2..4735- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGTCTACGACCGCGATACACTGATCAAGATGGACGTCTACGACCG
CGATACACTGATCAAGGCGGTTACTCTGCCCGAGCAAGGGGCAGAAGATG
CCCCCCCCTCGGCAATGCGCATGTTCGTAAAAAAAGAAGAGACCTCCAAC
AGAATCAACGTTATCATCAGCGAGCATGGCGAGGCGTCGGGATGGCTCAG
CGGCATGACATTCTTGTGTTGCAAACAAACGGTGACAGCGGTTACTCTGC
CCGAGCAAGGGGCAGAAGATGCCCCCCCCTCGGCAATGCGCATGTTCGTA
AAAAAAGAAGAGACCTCCAACAGAATCAACGTTATCATCAGCGAGCATGG
CGAGGCGTCGGGATGGCTCAGCGGCATGACATTCTTGTGTTGCAAACAAA
CGGTGACAGCGAGCTCTGAACCTGTTTTGCCCTCGATTGCCCACAGGGGT
ACGGATGCTCGAGGCTCGCCCTCGACAAGACAGGCGAGCTCTGAACCTGT
TTTGCCCTCGATTGCCCACAGGGGTACGGATGCTCGAGGCTCGCCCTCGA
CAAGACAGGTACAACTCGAAGGCCTGCGCGTTGGAATGCAACGTCCCTGG
GGTCCTGAAGGAGTCACGGGCTGTGGCCCGCGTCGCGTATGCCTCAGTGC
AAGTCCAGTCAGCTCCGCTGCCTCGAGCCCAACGAATGTACGTACGCCGA
ATGATCCAGACCCGGAAGCTATAGCCCGGATGAATATGGCCAGGGCTCTC
CTCGAAAGCGAGTCTGTGTCTGCCGCCCTAGGTTCGTCATCACGGACCGA
CAACTTTGACGACTCCTATTCAACGCAGCCATCCAGCACGATGCGTGATT
CAGGTCGTATACGTGATATAAGCCGGTACGGTTCTGGGTCCCGTCAGGTT
GAAGGCGGAGGAATTAGTTACTTGGGGCTGCGGGGGAGTAATCGGAACTC
AGCACTCAGACCGACCGTAAACATATCGATAGCATCGGGTCACACCTTAC
CAAGTCACCGTGGCCGGTCGGTTGGACTGGAAATCACAGCAATTTCTAGC
ACCCGCGGCGGTGAAGTGCTTTCTCCTATCTCATCGACGCCTGTAGCACA
GACAGCATCGGGTTTCGCATCGCCATCCTCCGACACAGTGGGATTGGATA
CGACGGTGCCTGATGCACCGGTAACGGCACCCGACGCCCGTCCCCCCCCC
GCCGGGGACGAGGCTGCTGCAGGCGGCGGTGATGCAATGCTTCCTAGTAG
TGAGTCGCCAACAATGGCATCATCTCCTCTTCCGGCGCGACAACTCGTGG
GAGGGATAGACACCATGGGACCGGCGGTCTTTCACAGCCTGAGAGACCCG
CAGAGTCCGCCTCATAACGAAGCTCCTGGAACGCGAGCGACGCCGAATGG
TGAAATGCTACATAGGTCGGAATAGGTACAACTCGAAGGCCTGCGCGTTG
GAATGCAACGTCCCTGGGGTCCTGAAGGAGTCACGGGCTGTGGCCCGCGT
CGCGTATGCCTCAGTGCAAGTCCAGTCAGCTCCGCTGCCTCGAGCCCAAC
GAATGTACGTACGCCGAATGATCCAGACCCGGAAGCTATAGCCCGGATGA
ATATGGCCAGGGCTCTCCTCGAAAGCGAGTCTGTGTCTGCCGCCCTAGGT
TCGTCATCACGGACCGACAACTTTGACGACTCCTATTCAACGCAGCCATC
CAGCACGATGCGTGATTCAGGTCGTATACGTGATATAAGCCGGTACGGTT
CTGGGTCCCGTCAGGTTGAAGGCGGAGGAATTAGTTACTTGGGGCTGCGG
GGGAGTAATCGGAACTCAGCACTCAGACCGACCGTAAACATATCGATAGC
ATCGGGTCACACCTTACCAAGTCACCGTGGCCGGTCGGTTGGACTGGAAA
TCACAGCAATTTCTAGCACCCGCGGCGGTGAAGTGCTTTCTCCTATCTCA
TCGACGCCTGTAGCACAGACAGCATCGGGTTTCGCATCGCCATCCTCCGA
CACAGTGGGATTGGATACGACGGTGCCTGATGCACCGGTAACGGCACCCG
ACGCCCGTCCCCCCCCCGCCGGGGACGAGGCTGCTGCAGGCGGCGGTGAT
GCAATGCTTCCTAGTAGTGAGTCGCCAACAATGGCATCATCTCCTCTTCC
GGCGCGACAACTCGTGGGAGGGATAGACACCATGGGACCGGCGGTCTTTC
ACAGCCTGAGAGACCCGCAGAGTCCGCCTCATAACGAAGCTCCTGGAACG
CGAGCGACGCCGAATGGTGAAATGCTACATAGGTCGGAATAG
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