mRNA_H-paniculata_contig51970.12541.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig51970.12541.1
Unique NamemRNA_H-paniculata_contig51970.12541.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig51970.12541.1 vs. uniprot
Match: A0A151ITN2_9HYME (Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151ITN2_9HYME)

HSP 1 Score: 56.2 bits (134), Expect = 5.850e-6
Identity = 48/158 (30.38%), Postives = 76/158 (48.10%), Query Frame = 1 
Query:  100 VYCRRCGKRGHDLYAC-PQIADEDACLAEDETEIDLEEALKVDLGEDESIAAYIASTSTTGKEEVLSVDSEGLEYRKVGGMEIWICDNGATKHMTHDSDFLFNYQEC-DGHVRLADGSRLPIEGVGMMFLQFRFDSEVLMK-LTQVAFIPLLSHHLLS 564
            + C  C K GH +  C  +  DED  +   E         K    E  + AA+ A        EV+  +   LE +     ++WI D+GA++HMTH S+++ N Q   D HV L DG++  + G G +++Q   D + L   L  V ++P L+ +L S
Sbjct:  227 IECFYCHKLGHYIKDCRKKRRDEDQGIRSKE---------KQKNNESNTEAAFSA--------EVIEKEILNLEVK-----DVWILDSGASRHMTHRSNWISNLQTYKDEHVSLGDGTKCKVHGRGTVYIQRLVDGQWLDGVLEDVLYVPDLNKNLFS 362
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51970.12541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A151ITN2_9HYME5.850e-630.38Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51970contigH-paniculata_contig51970:248..811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size564
Cds size564
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930514.5536382-CDS-H-paniculata_contig51970:247..8111622930514.5536382-CDS-H-paniculata_contig51970:247..811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51970 248..811 +
1691481326.6238093-CDS-H-paniculata_contig51970:247..8111691481326.6238093-CDS-H-paniculata_contig51970:247..811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51970 248..811 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51970.12541.1prot_H-paniculata_contig51970.12541.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig51970 248..811 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig51970.12541.1

>prot_H-paniculata_contig51970.12541.1 ID=prot_H-paniculata_contig51970.12541.1|Name=mRNA_H-paniculata_contig51970.12541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=188bp
NSTNGGQSAGTKSKQPRCFICRSKDHLRRECPNVYCRRCGKRGHDLYACP
QIADEDACLAEDETEIDLEEALKVDLGEDESIAAYIASTSTTGKEEVLSV
DSEGLEYRKVGGMEIWICDNGATKHMTHDSDFLFNYQECDGHVRLADGSR
LPIEGVGMMFLQFRFDSEVLMKLTQVAFIPLLSHHLLS
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mRNA from alignment at H-paniculata_contig51970:248..811+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig51970.12541.1 ID=mRNA_H-paniculata_contig51970.12541.1|Name=mRNA_H-paniculata_contig51970.12541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=564bp|location=Sequence derived from alignment at H-paniculata_contig51970:248..811+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACAGCACCAACGGTGGCCAGTCCGCTGGCACCAAGAGCAAGCAGCCAAG
GTGCTTCATCTGCCGCTCCAAGGATCACCTTCGACGGGAATGCCCCAACG
TGTACTGTCGGCGATGTGGTAAGCGTGGTCACGACTTGTACGCGTGCCCC
CAGATCGCCGATGAAGATGCTTGTTTGGCTGAAGATGAAACGGAGATTGA
CCTTGAAGAGGCGCTCAAGGTTGACCTGGGCGAAGACGAGTCCATCGCGG
CATACATCGCGTCGACTTCCACCACAGGCAAGGAAGAGGTTTTATCTGTG
GACTCTGAGGGGTTAGAATATCGTAAGGTGGGGGGGATGGAAATCTGGAT
TTGTGATAATGGTGCAACGAAACACATGACCCATGATTCAGATTTTCTTT
TTAATTACCAGGAATGTGATGGGCATGTACGCCTTGCAGATGGTAGTCGT
CTCCCGATCGAAGGAGTTGGCATGATGTTCCTTCAATTTCGATTTGACTC
CGAGGTTTTGATGAAGTTAACTCAGGTTGCGTTCATACCACTTCTCAGTC
ATCACCTTCTATCT
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Coding sequence (CDS) from alignment at H-paniculata_contig51970:248..811+

>mRNA_H-paniculata_contig51970.12541.1 ID=mRNA_H-paniculata_contig51970.12541.1|Name=mRNA_H-paniculata_contig51970.12541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1128bp|location=Sequence derived from alignment at H-paniculata_contig51970:248..811+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACAGCACCAACGGTGGCCAGTCCGCTGGCACCAAGAGCAAGCAGCCAAG
GTGCTTCATCTGCCGCTCCAAGGATCACCTTCGACGGGAATGCCCCAACG
TGTACTGTCGGCGATGTGGTAAGCGTGGTCACGACTTGTACGCGTGCCCC
CAGATCGCCGATGAAGATGCTTGTTTGGCTGAAGATGAAACGGAGATTGA
CCTTGAAGAGGCGCTCAAGGTTGACCTGGGCGAAGACGAGTCCATCGCGG
CATACATCGCGTCGACTTCCACCACAGGCAAGGAAGAGGTTTTATCTGTG
GACTCTGAGGGGTTAGAATATCGTAAGGTGGGGGGGATGGAAATCTGGAT
TTGTGATAATGGTGCAACGAAACACATGACCCATGATTCAGATTTTCTTT
TTAATTACCAGGAATGTGATGGGCATGTACGCCTTGCAGATGGTAGTCGT
CTCCCGATCGAAGGAGTTGGCATGATGTTCCTTCAATTTCGATTTGACTC
CGAGGTTTTGATGAAGTTAACTCAGGTTGCGTTCATACCACTTCTCAGTC
ATCACCTTCTATCTAACAGCACCAACGGTGGCCAGTCCGCTGGCACCAAG
AGCAAGCAGCCAAGGTGCTTCATCTGCCGCTCCAAGGATCACCTTCGACG
GGAATGCCCCAACGTGTACTGTCGGCGATGTGGTAAGCGTGGTCACGACT
TGTACGCGTGCCCCCAGATCGCCGATGAAGATGCTTGTTTGGCTGAAGAT
GAAACGGAGATTGACCTTGAAGAGGCGCTCAAGGTTGACCTGGGCGAAGA
CGAGTCCATCGCGGCATACATCGCGTCGACTTCCACCACAGGCAAGGAAG
AGGTTTTATCTGTGGACTCTGAGGGGTTAGAATATCGTAAGGTGGGGGGG
ATGGAAATCTGGATTTGTGATAATGGTGCAACGAAACACATGACCCATGA
TTCAGATTTTCTTTTTAATTACCAGGAATGTGATGGGCATGTACGCCTTG
CAGATGGTAGTCGTCTCCCGATCGAAGGAGTTGGCATGATGTTCCTTCAA
TTTCGATTTGACTCCGAGGTTTTGATGAAGTTAACTCAGGTTGCGTTCAT
ACCACTTCTCAGTCATCACCTTCTATCT
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