prot_H-paniculata_contig51970.12541.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig51970.12541.1
Unique Nameprot_H-paniculata_contig51970.12541.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length188
Homology
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BLAST of mRNA_H-paniculata_contig51970.12541.1 vs. uniprot
Match: A0A151ITN2_9HYME (Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151ITN2_9HYME)

HSP 1 Score: 56.2 bits (134), Expect = 5.850e-6
Identity = 48/158 (30.38%), Postives = 76/158 (48.10%), Query Frame = 0 
Query:   34 VYCRRCGKRGHDLYAC-PQIADEDACLAEDETEIDLEEALKVDLGEDESIAAYIASTSTTGKEEVLSVDSEGLEYRKVGGMEIWICDNGATKHMTHDSDFLFNYQEC-DGHVRLADGSRLPIEGVGMMFLQFRFDSEVLMK-LTQVAFIPLLSHHLLS 188
            + C  C K GH +  C  +  DED  +   E         K    E  + AA+ A        EV+  +   LE +     ++WI D+GA++HMTH S+++ N Q   D HV L DG++  + G G +++Q   D + L   L  V ++P L+ +L S
Sbjct:  227 IECFYCHKLGHYIKDCRKKRRDEDQGIRSKE---------KQKNNESNTEAAFSA--------EVIEKEILNLEVK-----DVWILDSGASRHMTHRSNWISNLQTYKDEHVSLGDGTKCKVHGRGTVYIQRLVDGQWLDGVLEDVLYVPDLNKNLFS 362
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51970.12541.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A151ITN2_9HYME5.850e-630.38Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 35..51
e-value: 0.36
score: 13.9
coord: 17..33
e-value: 0.0081
score: 24.1
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 17..33
e-value: 0.0024
score: 17.9
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 36..51
score: 8.697
NoneNo IPR availableGENE3D4.10.60.10coord: 7..52
e-value: 4.0E-9
score: 38.2
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 10..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51970contigH-paniculata_contig51970:248..811 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51970.12541.1mRNA_H-paniculata_contig51970.12541.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig51970 248..811 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig51970.12541.1 ID=prot_H-paniculata_contig51970.12541.1|Name=mRNA_H-paniculata_contig51970.12541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=188bp
NSTNGGQSAGTKSKQPRCFICRSKDHLRRECPNVYCRRCGKRGHDLYACP
QIADEDACLAEDETEIDLEEALKVDLGEDESIAAYIASTSTTGKEEVLSV
DSEGLEYRKVGGMEIWICDNGATKHMTHDSDFLFNYQECDGHVRLADGSR
LPIEGVGMMFLQFRFDSEVLMKLTQVAFIPLLSHHLLS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf