mRNA_H-paniculata_contig51961.12540.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig51961.12540.1
Unique NamemRNA_H-paniculata_contig51961.12540.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig51961.12540.1 vs. uniprot
Match: A0A1U8Q9U1_NELNU (uncharacterized protein LOC109115353 n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8Q9U1_NELNU)

HSP 1 Score: 85.5 bits (210), Expect = 3.750e-17
Identity = 41/109 (37.61%), Postives = 63/109 (57.80%), Query Frame = 1 
Query:    1 EMQGLIDNGVWMQVERPNNKLVVSALMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHFQEASSTAPAAASTKMMLSLAAIQDWELRHVDFEQVYLHAPIDQEISSKFP 327
            EM+ L DN  W  V  P  K +V    I+  K+G +GK+E+YK RLVA G  Q  G+ ++E  ++     S +++LS+AA  DWEL  +D    +L+  +D+E+  K P
Sbjct:  413 EMKALNDNNTWEVVNMPEGKKLVGCKWIFMVKVGLEGKIERYKARLVAQGYTQTYGLDYEETFASVAKLNSIRVLLSMAANLDWELHQMDVSNAFLNGTLDEEVYMKLP 521
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BLAST of mRNA_H-paniculata_contig51961.12540.1 vs. uniprot
Match: A0A540MBJ7_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540MBJ7_MALBA)

HSP 1 Score: 82.8 bits (203), Expect = 9.610e-17
Identity = 41/109 (37.61%), Postives = 63/109 (57.80%), Query Frame = 1 
Query:    1 EMQGLIDNGVWMQVERPNNKLVVSALMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHFQEASSTAPAAASTKMMLSLAAIQDWELRHVDFEQVYLHAPIDQEISSKFP 327
            E   L   G W  V  P ++ V+ +  +YK K  +DGKV +YK RLVAHG  Q +G+ + E  S      + +++LSLAA++ WELR +D +  +LH  + +E+  K P
Sbjct:  158 EFVSLQKQGTWELVPPPVDRNVIGSKWVYKIKKDQDGKVSRYKARLVAHGYSQEQGLDYDETFSLVVRHTTVRLVLSLAAMKGWELRQLDVKNAFLHGELQEEVFMKQP 266
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BLAST of mRNA_H-paniculata_contig51961.12540.1 vs. uniprot
Match: A0A151T5R4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T5R4_CAJCA)

HSP 1 Score: 81.6 bits (200), Expect = 8.970e-16
Identity = 40/109 (36.70%), Postives = 63/109 (57.80%), Query Frame = 1 
Query:    1 EMQGLIDNGVWMQVERPNNKLVVSALMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHFQEASSTAPAAASTKMMLSLAAIQDWELRHVDFEQVYLHAPIDQEISSKFP 327
            EM  L +N  W  V+ P  K VV    I+  K+G DGK+++YK RLVA G  Q  GI ++E  +      S ++++SLAA  DW+L  +D +  +L+  +++E+  K P
Sbjct:  871 EMAALEENKTWDIVKLPKEKKVVGCRWIFTTKMGADGKIDRYKARLVAQGYTQTHGIDYEETFAPVAKLNSIRILISLAANLDWKLHQLDVKNAFLNGKLEEEVYMKLP 979
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BLAST of mRNA_H-paniculata_contig51961.12540.1 vs. uniprot
Match: A0A151RM91_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RM91_CAJCA)

HSP 1 Score: 80.5 bits (197), Expect = 1.770e-15
Identity = 35/109 (32.11%), Postives = 62/109 (56.88%), Query Frame = 1 
Query:    1 EMQGLIDNGVWMQVERPNNKLVVSALMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHFQEASSTAPAAASTKMMLSLAAIQDWELRHVDFEQVYLHAPIDQEISSKFP 327
            E++ L  N  W     P++K  +  L +YK K   DG +E+YK  LVA G  Q++G+ F +  S      + +++L+LA++Q+W L+ +D   V+LH  + +E+  + P
Sbjct:   32 ELRALEANNTWTLTTLPSHKTAIGCLWVYKIKFHADGSIERYKAHLVAKGYTQLEGLDFLDTFSPVAKLTTVRLLLALASLQNWHLKQLDVNNVFLHGDLHEEVYIQLP 140
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BLAST of mRNA_H-paniculata_contig51961.12540.1 vs. uniprot
Match: A0A7N2KRT0_QUELO (Integrase catalytic domain-containing protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2KRT0_QUELO)

HSP 1 Score: 80.5 bits (197), Expect = 2.280e-15
Identity = 41/109 (37.61%), Postives = 61/109 (55.96%), Query Frame = 1 
Query:    1 EMQGLIDNGVWMQVERPNNKLVVSALMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHFQEASSTAPAAASTKMMLSLAAIQDWELRHVDFEQVYLHAPIDQEISSKFP 327
            EM+ L  N  W  V+ PN K VV    ++  K   DG VE+YK RLVA G  Q  GI ++E  +      S ++++SLAA QDW L  +D +  +LH  +++E+  + P
Sbjct:  866 EMRALKKNDTWDYVDLPNGKRVVGCKWVFTIKHKADGSVERYKARLVAKGFTQTYGIDYKETFAPVAKMNSIRVLISLAANQDWPLHQLDVKNAFLHGDLEEEVYMELP 974
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BLAST of mRNA_H-paniculata_contig51961.12540.1 vs. uniprot
Match: A0A7N2N4W9_QUELO (Integrase catalytic domain-containing protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2N4W9_QUELO)

HSP 1 Score: 80.5 bits (197), Expect = 2.310e-15
Identity = 41/109 (37.61%), Postives = 61/109 (55.96%), Query Frame = 1 
Query:    1 EMQGLIDNGVWMQVERPNNKLVVSALMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHFQEASSTAPAAASTKMMLSLAAIQDWELRHVDFEQVYLHAPIDQEISSKFP 327
            EM+ L  N  W  V+ PN K VV    ++  K   DG VE+YK RLVA G  Q  GI ++E  +      S ++++SLAA QDW L  +D +  +LH  +++E+  + P
Sbjct: 1437 EMRALKKNDTWDYVDLPNGKRVVGCKWVFTIKHKADGSVERYKARLVAKGFTQTYGIDYKETFAPVAKMNSIRVLISLAANQDWPLHQLDVKNAFLHGDLEEEVYMELP 1545
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BLAST of mRNA_H-paniculata_contig51961.12540.1 vs. uniprot
Match: A0A540NMU0_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NMU0_MALBA)

HSP 1 Score: 76.6 bits (187), Expect = 3.020e-15
Identity = 37/102 (36.27%), Postives = 57/102 (55.88%), Query Frame = 1 
Query:    1 EMQGLIDNGVWMQVERPNNKLVVSALMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHFQEASSTAPAAASTKMMLSLAAIQDWELRHVDFEQVYLHAPIDQ 306
            E + L   G W  V  P N+ V+ +  +YK K  +DGKV +YK RLVA G  Q  G+ + E  S      + +++LSLAA+  W+LR +D +  +LH  + +
Sbjct:   72 EFEALQKQGTWELVPVPQNRNVIGSKWVYKLKKDQDGKVSRYKARLVAQGFSQEHGLEYDETFSPVVRHTTVRLVLSLAAMNKWDLRQLDVKNAFLHGELQE 173
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BLAST of mRNA_H-paniculata_contig51961.12540.1 vs. uniprot
Match: UPI0008FD5801 (uncharacterized protein LOC109116481 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI0008FD5801)

HSP 1 Score: 79.7 bits (195), Expect = 3.110e-15
Identity = 41/109 (37.61%), Postives = 58/109 (53.21%), Query Frame = 1 
Query:    1 EMQGLIDNGVWMQVERPNNKLVVSALMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHFQEASSTAPAAASTKMMLSLAAIQDWELRHVDFEQVYLHAPIDQEISSKFP 327
            E+  L+ NG W  V  P  K  V    +YK K   DG VE+YK RLVA G  Q +G+ F +  S      + K++L+LAA Q+W L  +D    +LH  +++EI    P
Sbjct:    4 ELDALVGNGTWSVVSLPPGKRAVGCKWVYKIKRKADGSVERYKARLVAKGFTQQEGVDFIDTFSPVAKLVTVKLLLALAAKQNWILTQMDVTNAFLHGDLEEEIYMSLP 112
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BLAST of mRNA_H-paniculata_contig51961.12540.1 vs. uniprot
Match: A0A4Y1RWQ7_PRUDU (Integrase catalytic domain-containing protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RWQ7_PRUDU)

HSP 1 Score: 79.0 bits (193), Expect = 7.820e-15
Identity = 39/109 (35.78%), Postives = 59/109 (54.13%), Query Frame = 1 
Query:    1 EMQGLIDNGVWMQVERPNNKLVVSALMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHFQEASSTAPAAASTKMMLSLAAIQDWELRHVDFEQVYLHAPIDQEISSKFP 327
            E++ L   G W     P NK +V +  +YK K   DG V +YK RLVA G  Q  G+ F E  S      + +++LSLAA+  W LR +D +  +LH  +++E+  + P
Sbjct:  448 EIEALQSQGTWSLEPNPGNKNIVGSKWLYKIKKNSDGSVARYKARLVAQGFSQQPGLDFGETFSPVVRHTTVRLVLSLAAMNQWSLRQLDVKNAFLHGDLEEEVFMRQP 556
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BLAST of mRNA_H-paniculata_contig51961.12540.1 vs. uniprot
Match: A0A182HAC3_AEDAL (Integrase catalytic domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182HAC3_AEDAL)

HSP 1 Score: 78.6 bits (192), Expect = 1.050e-14
Identity = 33/109 (30.28%), Postives = 68/109 (62.39%), Query Frame = 1 
Query:    1 EMQGLIDNGVWMQVERPNNKLVVSALMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHFQEASSTAPAAASTKMMLSLAAIQDWELRHVDFEQVYLHAPIDQEISSKFP 327
            E Q LIDN  W  V+ P ++ ++ +  ++KRK+  DGKV+++K RLVA G  Q  G+ F ++ +     ++ +++L++A  +  +++H+D +  YL+  +++E+  + P
Sbjct:  372 EYQSLIDNDTWELVDPPTDRNIIGSRWVFKRKLNADGKVDRFKARLVAQGFAQRVGVDFDDSFAPVAMHSTFRLLLTVAGYRKMQVKHLDVKSAYLYGTLEEEVFMRQP 480
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51961.12540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1U8Q9U1_NELNU3.750e-1737.61uncharacterized protein LOC109115353 n=1 Tax=Nelum... [more]
A0A540MBJ7_MALBA9.610e-1737.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A151T5R4_CAJCA8.970e-1636.70Retrovirus-related Pol polyprotein from transposon... [more]
A0A151RM91_CAJCA1.770e-1532.11Retrovirus-related Pol polyprotein from transposon... [more]
A0A7N2KRT0_QUELO2.280e-1537.61Integrase catalytic domain-containing protein n=1 ... [more]
A0A7N2N4W9_QUELO2.310e-1537.61Integrase catalytic domain-containing protein n=1 ... [more]
A0A540NMU0_MALBA3.020e-1536.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI0008FD58013.110e-1537.61uncharacterized protein LOC109116481 n=1 Tax=Taren... [more]
A0A4Y1RWQ7_PRUDU7.820e-1535.78Integrase catalytic domain-containing protein n=1 ... [more]
A0A182HAC3_AEDAL1.050e-1430.28Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51961contigH-paniculata_contig51961:825..1154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score89.0
Seed ortholog evalue1.5e-15
Seed eggNOG ortholog28532.XP_010532348.1
Preferred nameUSP
KEGG rclassRC00002
KEGG koko:K12447
KEGG ReactionR00289,R00502,R01381,R03077,R08845
KEGG Pathwayko00040,ko00052,ko00053,ko00520,ko01100,ko01130,map00040,map00052,map00053,map00520,map01100,map01130
KEGG ModuleM00014
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003983,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006011,GO:0006082,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009225,GO:0009226,GO:0009555,GO:0009987,GO:0010035,GO:0010038,GO:0010491,GO:0016740,GO:0016772,GO:0016779,GO:0017103,GO:0018130,GO:0019438,GO:0019752,GO:0032501,GO:0032502,GO:0033356,GO:0034641,GO:0034654,GO:0042221,GO:0042995,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046398,GO:0046483,GO:0046686,GO:0047338,GO:0047350,GO:0048229,GO:0048856,GO:0050896,GO:0051748,GO:0052573,GO:0055086,GO:0070569,GO:0071704,GO:0090406,GO:0120025,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.udp-sugar
EggNOG OGs37MVU@33090,3GGIU@35493,3HSQP@3699,COG2801@1,COG4284@1,KOG0017@2759,KOG2388@2759
EC2.7.7.64
COG Functional cat.M
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size330
Cds size327
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930514.4883435-UTR-H-paniculata_contig51961:824..8271622930514.4883435-UTR-H-paniculata_contig51961:824..827Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig51961 825..827 +
1691481326.6035464-UTR-H-paniculata_contig51961:824..8271691481326.6035464-UTR-H-paniculata_contig51961:824..827Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig51961 825..827 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930514.5020418-CDS-H-paniculata_contig51961:827..11541622930514.5020418-CDS-H-paniculata_contig51961:827..1154Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51961 828..1154 +
1691481326.6148932-CDS-H-paniculata_contig51961:827..11541691481326.6148932-CDS-H-paniculata_contig51961:827..1154Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51961 828..1154 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51961.12540.1prot_H-paniculata_contig51961.12540.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig51961 828..1154 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig51961.12540.1

>prot_H-paniculata_contig51961.12540.1 ID=prot_H-paniculata_contig51961.12540.1|Name=mRNA_H-paniculata_contig51961.12540.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MQGLIDNGVWMQVERPNNKLVVSALMIYKRKIGEDGKVEKYKCRLVAHGN
RQIKGIHFQEASSTAPAAASTKMMLSLAAIQDWELRHVDFEQVYLHAPID
QEISSKFP*
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mRNA from alignment at H-paniculata_contig51961:825..1154+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig51961.12540.1 ID=mRNA_H-paniculata_contig51961.12540.1|Name=mRNA_H-paniculata_contig51961.12540.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=330bp|location=Sequence derived from alignment at H-paniculata_contig51961:825..1154+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGATGCAAGGCCTCATCGACAACGGGGTTTGGATGCAAGTGGAGCGCCC
GAATAACAAGCTGGTCGTGAGCGCGTTGATGATCTATAAAAGGAAAATAG
GCGAGGACGGCAAAGTGGAGAAATACAAATGCCGCCTGGTCGCTCACGGG
AACCGTCAGATCAAGGGCATCCATTTCCAGGAAGCTTCGTCCACTGCACC
CGCAGCGGCCAGCACAAAAATGATGTTGTCGCTTGCGGCAATCCAGGACT
GGGAGCTTCGGCACGTCGACTTTGAACAAGTGTACCTGCATGCGCCCATC
GACCAAGAGATTTCGTCGAAATTCCCGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig51961:825..1154+

>mRNA_H-paniculata_contig51961.12540.1 ID=mRNA_H-paniculata_contig51961.12540.1|Name=mRNA_H-paniculata_contig51961.12540.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig51961:825..1154+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAGGCCTCATCGACAACGGGGTTTGGATGCAAGTGGAGCGCCCGAA
TAACAAGCTGGTCGTGAGCGCGTTGATGATCTATAAAAGGAAAATAGGCG
AGGACGGCAAAGTGGAGAAATACAAATGCCGCCTGGTCGCTCACGGGAAC
CGTCAGATCAAGGGCATCCATTTCCAGGAAGCTTCGTCCACTGCACCCGC
AGCGGCCAGCACAAAAATGATGTTGTCGCTTGCGGCAATCCAGGACTGGG
AGCTTCGGCACGTCGACTTTGAACAAGTGTACCTGCATGCGCCCATCGAC
CAAGAGATTTCGTCGAAATTCCCGTGAATGCAAGGCCTCATCGACAACGG
GGTTTGGATGCAAGTGGAGCGCCCGAATAACAAGCTGGTCGTGAGCGCGT
TGATGATCTATAAAAGGAAAATAGGCGAGGACGGCAAAGTGGAGAAATAC
AAATGCCGCCTGGTCGCTCACGGGAACCGTCAGATCAAGGGCATCCATTT
CCAGGAAGCTTCGTCCACTGCACCCGCAGCGGCCAGCACAAAAATGATGT
TGTCGCTTGCGGCAATCCAGGACTGGGAGCTTCGGCACGTCGACTTTGAA
CAAGTGTACCTGCATGCGCCCATCGACCAAGAGATTTCGTCGAAATTCCC
GTGA
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