mRNA_H-paniculata_contig5190.12534.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5190.12534.1
Unique NamemRNA_H-paniculata_contig5190.12534.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5190.12534.1 vs. uniprot
Match: D7G5J6_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5J6_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 3.150e-21
Identity = 42/66 (63.64%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    1 SSVELWDVDAGQWLSRCKSQPFDIHAAWMPDGKHFIAGLDLKSDHSDDSWPISQTLGIRRRVSTLS 198
            SS ELWD   GQ LSRC+SQPFD+HAAWMPDG+HF+AGLDL  D +DD+ P +QT  IRRR + ++
Sbjct:  278 SSSELWDAWHGQRLSRCRSQPFDVHAAWMPDGEHFVAGLDLTWDETDDTVPYTQTFAIRRRPTPIT 343
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BLAST of mRNA_H-paniculata_contig5190.12534.1 vs. uniprot
Match: A0A6H5JK18_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK18_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 8.030e-21
Identity = 40/61 (65.57%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:    1 SSVELWDVDAGQWLSRCKSQPFDIHAAWMPDGKHFIAGLDLKSDHSDDSWPISQTLGIRRR 183
            S+ ELWD   GQ +SRC+SQPFD+HAAWMPDG+HF+AGLDL  D +DD+ P +QT  IRRR
Sbjct:  358 STSELWDARHGQCISRCRSQPFDVHAAWMPDGEHFVAGLDLTWDETDDTVPYTQTFAIRRR 418
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5190.12534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5J6_ECTSI3.150e-2163.64F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JK18_9PHAE8.030e-2165.57F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5190contigH-paniculata_contig5190:13167..14079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue4e-18
Seed eggNOG ortholog2880.D7G5J6
KEGG koko:K10263,ko:K22382
Hectar predicted targeting categoryother localisation
EggNOG free text desc.negative regulation of gluconeogenesis
EggNOG OGsKOG0293@1,KOG0293@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04121
Exons2
Model size397
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930513.8333375-CDS-H-paniculata_contig5190:13166..134251622930513.8333375-CDS-H-paniculata_contig5190:13166..13425Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5190 13167..13425 -
1691481326.3686354-CDS-H-paniculata_contig5190:13166..134251691481326.3686354-CDS-H-paniculata_contig5190:13166..13425Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5190 13167..13425 -
1622930513.8456743-CDS-H-paniculata_contig5190:13942..140791622930513.8456743-CDS-H-paniculata_contig5190:13942..14079Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5190 13943..14079 -
1691481326.3804264-CDS-H-paniculata_contig5190:13942..140791691481326.3804264-CDS-H-paniculata_contig5190:13942..14079Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5190 13943..14079 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5190.12534.1prot_H-paniculata_contig5190.12534.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5190 13167..14079 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5190.12534.1

>prot_H-paniculata_contig5190.12534.1 ID=prot_H-paniculata_contig5190.12534.1|Name=mRNA_H-paniculata_contig5190.12534.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
SSVELWDVDAGQWLSRCKSQPFDIHAAWMPDGKHFIAGLDLKSDHSDDSW
PISQTLGIRRRVSTLSSNPLRLPPSLPPPSVAATAPAPAVPTVAGLPVSG
RLSEEQGQGIRWGEEEGPEFPRTHHLEYSMAM
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mRNA from alignment at H-paniculata_contig5190:13167..14079-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5190.12534.1 ID=mRNA_H-paniculata_contig5190.12534.1|Name=mRNA_H-paniculata_contig5190.12534.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=913bp|location=Sequence derived from alignment at H-paniculata_contig5190:13167..14079- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCTCGGTCGAACTGTGGGACGTGGATGCGGGCCAATGGTTGAGCCGATG
CAAGTCGCAGCCGTTCGACATCCACGCTGCGTGGATGCCCGACGGAAAGC
ATTTCATCGCTGGTCTTGACCTCAAGTCGGACCACTCGTGAGTTCCAATC
GAACTGTGTGTTTCCTGAGGTTGGTAATTGCACGTTTTTTCTTGTGTTTC
TTGTAAGCTTTCCGGAGGCTGGTCCGTGTAGATTTTTAGAGATCGCTACT
CGACAACCCCGTACAAACAAACAGCGTTTCCCGCCAAACGCTTGCCATTG
CCGTGCACGTGCGGGAAAAGAGGAGGATTTACGTGCTGTCGTTGTGCAGG
AAGGAGGCCAAACGATCATTTATACTTCGTTTTGACTAAATCAGGCCTCC
GTTGTAGGTTGATGATGAGTACCGCGCACACAAACATGGATGCAATTGCT
ACTCAGTAATTTTTGTTATTTATCGATACGTGTCATCATTTACCTACTAC
AAGTAATCATTGCGTATTCTCCGTATTTTTGCCACATCTCAGCAAGTCCG
GCGTGGATTGTCGCAAACCTCCTCCCCAACAAGACCTTGCAACCCTTCCC
CCCTCCCCTGGTACCCGGTACCTGCCCCGTCCATCCCTTATCCGTCGACA
ATAGTGATGACTCATGGCCGATATCTCAGACCCTCGGCATCCGCCGACGT
GTATCAACACTGTCGTCAAATCCGCTGAGATTACCGCCGTCCCTGCCTCC
GCCGTCGGTGGCAGCGACAGCGCCAGCCCCAGCGGTGCCGACGGTAGCTG
GTCTCCCGGTGTCGGGGAGGTTGTCAGAGGAGCAAGGTCAAGGTATTCGG
TGGGGTGAAGAGGAAGGCCCGGAGTTCCCTCGCACCCACCATTTGGAGTA
TTCGATGGCAATG
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Coding sequence (CDS) from alignment at H-paniculata_contig5190:13167..14079-

>mRNA_H-paniculata_contig5190.12534.1 ID=mRNA_H-paniculata_contig5190.12534.1|Name=mRNA_H-paniculata_contig5190.12534.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig5190:13167..14079- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCTCGGTCGAACTGTGGGACGTGGATGCGGGCCAATGGTTGAGCCGATG
CAAGTCGCAGCCGTTCGACATCCACGCTGCGTGGATGCCCGACGGAAAGC
ATTTCATCGCTGGTCTTGACCTCAAGTCGGACCACTCAGCTCGGTCGAAC
TGTGGGACGTGGATGCGGGCCAATGGTTGAGCCGATGCAAGTCGCAGCCG
TTCGACATCCACGCTGCGTGGATGCCCGACGGAAAGCATTTCATCGCTGG
TCTTGACCTCAAGTCGGACCACTCTGATGACTCATGGCCGATATCTCAGA
CCCTCGGCATCCGCCGACGTGTATCAACACTGTCGTCAAATCCGCTGAGA
TTACCGCCGTCCCTGCCTCCGCCGTCGGTGGCAGCGACAGCGCCAGCCCC
AGCGGTGCCGACGGTAGCTGGTCTCCCGGTGTCGGGGAGGTTGTCAGAGG
AGCAAGGTCAAGGTATTCGGTGGGGTGAAGAGGAAGGCCCGGAGTTCCCT
CGCACCCACCATTTGGAGTATTCGATGGCAATGTGATGACTCATGGCCGA
TATCTCAGACCCTCGGCATCCGCCGACGTGTATCAACACTGTCGTCAAAT
CCGCTGAGATTACCGCCGTCCCTGCCTCCGCCGTCGGTGGCAGCGACAGC
GCCAGCCCCAGCGGTGCCGACGGTAGCTGGTCTCCCGGTGTCGGGGAGGT
TGTCAGAGGAGCAAGGTCAAGGTATTCGGTGGGGTGAAGAGGAAGGCCCG
GAGTTCCCTCGCACCCACCATTTGGAGTATTCGATGGCAATG
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