prot_H-paniculata_contig5190.12534.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5190.12534.1
Unique Nameprot_H-paniculata_contig5190.12534.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length132
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5190.12534.1 vs. uniprot
Match: D7G5J6_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5J6_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 3.150e-21
Identity = 42/66 (63.64%), Postives = 52/66 (78.79%), Query Frame = 0 
Query:    1 SSVELWDVDAGQWLSRCKSQPFDIHAAWMPDGKHFIAGLDLKSDHSDDSWPISQTLGIRRRVSTLS 66
            SS ELWD   GQ LSRC+SQPFD+HAAWMPDG+HF+AGLDL  D +DD+ P +QT  IRRR + ++
Sbjct:  278 SSSELWDAWHGQRLSRCRSQPFDVHAAWMPDGEHFVAGLDLTWDETDDTVPYTQTFAIRRRPTPIT 343
[Close]
BLAST of mRNA_H-paniculata_contig5190.12534.1 vs. uniprot
Match: A0A6H5JK18_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK18_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 8.030e-21
Identity = 40/61 (65.57%), Postives = 49/61 (80.33%), Query Frame = 0 
Query:    1 SSVELWDVDAGQWLSRCKSQPFDIHAAWMPDGKHFIAGLDLKSDHSDDSWPISQTLGIRRR 61
            S+ ELWD   GQ +SRC+SQPFD+HAAWMPDG+HF+AGLDL  D +DD+ P +QT  IRRR
Sbjct:  358 STSELWDARHGQCISRCRSQPFDVHAAWMPDGEHFVAGLDLTWDETDDTVPYTQTFAIRRR 418
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5190.12534.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5J6_ECTSI3.150e-2163.64F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JK18_9PHAE8.030e-2165.57F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5190contigH-paniculata_contig5190:13167..14079 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5190.12534.1mRNA_H-paniculata_contig5190.12534.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5190 13167..14079 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5190.12534.1 ID=prot_H-paniculata_contig5190.12534.1|Name=mRNA_H-paniculata_contig5190.12534.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
SSVELWDVDAGQWLSRCKSQPFDIHAAWMPDGKHFIAGLDLKSDHSDDSW
PISQTLGIRRRVSTLSSNPLRLPPSLPPPSVAATAPAPAVPTVAGLPVSG
RLSEEQGQGIRWGEEEGPEFPRTHHLEYSMAM
back to top