mRNA_H-paniculata_contig519.12533.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig519.12533.1
Unique NamemRNA_H-paniculata_contig519.12533.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig519.12533.1 vs. uniprot
Match: D7G5K9_ECTSI (HA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5K9_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 2.940e-25
Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 1
Query:    4 QVFEALVRYKQVHGNLRIPVAFRVPSYDPWPAETWGLALGQRVYDIRVHHRYIKVHPDRIRALNKLGFIWADAGEAS 234
            QV++AL++YK  HGNL +PVAF VPS  PW  + WGLALGQRV DIR  HRYI+  P+RIR LN++GF W DA +AS
Sbjct:  329 QVYDALLQYKAEHGNLHVPVAFSVPSSPPWHQDLWGLALGQRVLDIRATHRYIRNDPERIRLLNEVGFRWTDATKAS 405          
BLAST of mRNA_H-paniculata_contig519.12533.1 vs. uniprot
Match: A0A482RVD4_9ARCH (HA domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVD4_9ARCH)

HSP 1 Score: 84.3 bits (207), Expect = 2.590e-17
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query:    7 VFEALVRYKQVHGNLRIPVAFRVPSYDPWPAETWGLALGQRVYDIRVHHRYIKVHPDRIRALNKLGFIWADAGEA 231
            ++ AL  YKQVHGN+ +P++F VPSY+PWP + WGL LG RV  IR H   +   P+R   L+ LGF+W  +  +
Sbjct:   93 IYLALQAYKQVHGNVDVPLSFVVPSYEPWPVDVWGLKLGLRVQAIRKHDSLVSRAPERRALLDALGFVWVSSNRS 167          
BLAST of mRNA_H-paniculata_contig519.12533.1 vs. uniprot
Match: A0A7S3YVR9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YVR9_9EUKA)

HSP 1 Score: 81.6 bits (200), Expect = 2.380e-16
Identity = 38/72 (52.78%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    4 QVFEALVRYKQVHGNLRIPVAFRVPSYDPWPAETWGLALGQRVYDIRVHHRYIKVHPDRIRALNKLGFIWAD 219
            +V+E+LVRYK+++GNL IP  F VP  D WP+  W   LGQRV +IR    Y+K  P RI  LN LGF+W D
Sbjct:   69 KVWESLVRYKKLYGNLVIPHGFVVPQNDQWPSHLWDFGLGQRVRNIRSIGLYVKNDPFRIEMLNDLGFVWDD 140          
BLAST of mRNA_H-paniculata_contig519.12533.1 vs. uniprot
Match: A0A6H5L2W1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W1_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 9.030e-14
Identity = 35/79 (44.30%), Postives = 47/79 (59.49%), Query Frame = 1
Query:    7 VFEALVRYKQVHGNLRIPVAFRVPSYDPWPAETWGLALGQR----------VYDIRVHHRYIKVHPDRIRALNKLGFIW 213
            V++AL++YK  HGNL +PVAFRVPS  PW  + WGLALGQR          +Y +R +   +  HP+    +  LGF W
Sbjct:    8 VYDALLQYKAEHGNLHVPVAFRVPSSPPWHQDLWGLALGQRCSAFCVAGSMLYGLRRNPDRLNRHPEIRAEITALGFSW 86          
BLAST of mRNA_H-paniculata_contig519.12533.1 vs. uniprot
Match: A0A7S1G2X8_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G2X8_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.240e-13
Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    1 NQVFEALVRYKQVHGNLRIPVAFRVPSYDP-WPAETWGLALGQRVYDIRVHHRYIKVHPDRIRALNKLGFIW 213
            N V EAL+ YK V+G+L +P++F VP  D  WPA TWG+ LG  VY IR    ++  +P+RI  LN + F+W
Sbjct:  201 NLVVEALLTYKNVYGDLMVPLSFIVPHGDEYWPAATWGIGLGNIVYRIRSRQGFVAGNPERIDQLNGMDFVW 272          
BLAST of mRNA_H-paniculata_contig519.12533.1 vs. uniprot
Match: A0A7S4SEJ8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SEJ8_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.250e-13
Identity = 33/70 (47.14%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    4 QVFEALVRYKQVHGNLRIPVAFRVPSYDPWPAETWGLALGQRVYDIRVHHRYIKVHPDRIRALNKLGFIW 213
            +V++ALVRYK+++G+L IP  F VP  + W  E WGL LG RV  IR    ++K +P R   L++LGF W
Sbjct:   93 KVYDALVRYKEINGDLLIPQPFVVPENNDWSEEMWGLRLGARVNAIRSQGTFVKTNPARKEELDELGFEW 162          
BLAST of mRNA_H-paniculata_contig519.12533.1 vs. uniprot
Match: A0A6U3VLR0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3VLR0_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.280e-13
Identity = 33/70 (47.14%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    4 QVFEALVRYKQVHGNLRIPVAFRVPSYDPWPAETWGLALGQRVYDIRVHHRYIKVHPDRIRALNKLGFIW 213
            +V++ALVRYK+++G+L IP  F VP  + W  E WGL LG RV  IR    ++K +P R   L++LGF W
Sbjct:  396 KVYDALVRYKEINGDLLIPQPFVVPENNDWSEEMWGLRLGARVNAIRSQGTFVKTNPARKEELDELGFEW 465          
BLAST of mRNA_H-paniculata_contig519.12533.1 vs. uniprot
Match: B5YMG0_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMG0_THAPS)

HSP 1 Score: 69.7 bits (169), Expect = 3.960e-12
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 1
Query:    4 QVFEALVRYKQVHGNLRIPVAFRVPSYD-PWPAETWGLALGQRVYDIRVHHRYIKVHPDRIRALNKLGFIW 213
            +V++ALV+YK+++G+L +P  F VP     WP E WGL LG RV  +R    ++K  P R   L+ LGF+W
Sbjct:  281 RVYDALVKYKELYGDLLVPQPFTVPEDSGDWPEEVWGLRLGARVNAMRSQGTFVKSDPSRKEELDNLGFVW 351          
BLAST of mRNA_H-paniculata_contig519.12533.1 vs. uniprot
Match: A0A067CCS3_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CCS3_SAPPC)

HSP 1 Score: 68.6 bits (166), Expect = 9.450e-12
Identity = 33/72 (45.83%), Postives = 45/72 (62.50%), Query Frame = 1
Query:   16 ALVRYKQVHGNLRIPVAFRVPSYDPWPAETWGLALGQRVYDIRVHHRYIKVHPDRIRALNKLGFIWADAGEA 231
            AL  Y++++GNL +P  F VP +D WP+E W L LG  V   R  H   ++ P+R+ ALN LGF+W D  EA
Sbjct:  194 ALATYRKIYGNLHVPRDFVVPVHDGWPSEIWQLQLGDAVATFR--HHVDRLLPERVDALNALGFVW-DMNEA 262          
BLAST of mRNA_H-paniculata_contig519.12533.1 vs. uniprot
Match: A0A7S3QCY2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QCY2_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.380e-11
Identity = 33/72 (45.83%), Postives = 43/72 (59.72%), Query Frame = 1
Query:    1 NQVFEALVRYKQVHGNLRIPVAFRVPS-YDPWPAETWGLALGQRVYDIRVHHRYIKVHPDRIRALNKLGFIW 213
            N V++ALVRYK+++G+L +P  F V      W    WGL LG RV  IR    ++K +P R   LNKLGF W
Sbjct:  297 NNVYDALVRYKEINGDLLVPQPFIVAEGSSDWEERFWGLRLGARVNAIRSQGTFVKTNPSRKELLNKLGFEW 368          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig519.12533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5K9_ECTSI2.940e-2562.34HA domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A482RVD4_9ARCH2.590e-1746.67HA domain-containing protein (Fragment) n=1 Tax=ar... [more]
A0A7S3YVR9_9EUKA2.380e-1652.78Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A6H5L2W1_9PHAE9.030e-1444.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1G2X8_9STRA1.240e-1347.22Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S4SEJ8_9STRA3.250e-1347.14Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A6U3VLR0_9STRA3.280e-1347.14Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
B5YMG0_THAPS3.960e-1243.66Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A067CCS3_SAPPC9.450e-1245.83Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A7S3QCY2_9STRA1.380e-1145.83Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig519contigH-paniculata_contig519:35179..35924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue1e-21
Seed eggNOG ortholog2880.D7G5K9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Helicase associated domain
EggNOG OGs2B9HJ@1,2S0TY@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930513.7734542-CDS-H-paniculata_contig519:35178..353061622930513.7734542-CDS-H-paniculata_contig519:35178..35306Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig519 35179..35306 +
1691481326.347701-CDS-H-paniculata_contig519:35178..353061691481326.347701-CDS-H-paniculata_contig519:35178..35306Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig519 35179..35306 +
1622930513.7905116-CDS-H-paniculata_contig519:35818..359241622930513.7905116-CDS-H-paniculata_contig519:35818..35924Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig519 35819..35924 +
1691481326.3602142-CDS-H-paniculata_contig519:35818..359241691481326.3602142-CDS-H-paniculata_contig519:35818..35924Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig519 35819..35924 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig519.12533.1prot_H-paniculata_contig519.12533.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig519 35179..35924 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig519.12533.1

>prot_H-paniculata_contig519.12533.1 ID=prot_H-paniculata_contig519.12533.1|Name=mRNA_H-paniculata_contig519.12533.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
NQVFEALVRYKQVHGNLRIPVAFRVPSYDPWPAETWGLALGQRVYDIRVH
HRYIKVHPDRIRALNKLGFIWADAGEAS
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mRNA from alignment at H-paniculata_contig519:35179..35924+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig519.12533.1 ID=mRNA_H-paniculata_contig519.12533.1|Name=mRNA_H-paniculata_contig519.12533.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=746bp|location=Sequence derived from alignment at H-paniculata_contig519:35179..35924+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACCAGGTGTTCGAAGCTCTGGTGAGGTACAAGCAGGTCCACGGGAACTT GCGTATTCCTGTGGCTTTTCGTGTGCCCTCTTACGATCCGTGGCCAGCGG AGACGTGGGGGCTGGCGCTGGGGCAAAGGTGCAGATAAACACCGCGCGAC TATGACCCCCTTCCTGTCGAAATGGATCCTCTCTTTTGAGGATGAAAGCA GTATTTGAGGATTACAACAGATGTTGATGATAGTATTCAAACAGCAAGCA CATAGGTCCATGCGTGTATCGTGAACTAGAAAAAAAAGACACGCAGTTGA CGCGTGGTTAAGATATTTTGGCAGCTATCCTCTGGCGAGTGATGCCAAAA GGGAGCCCTCTCTATCGTAGGTTGACGAGGCCCCAGTCCGTTTTTCTGGC TCTTGATATATTCACTCATTGATTTATTGATACACTCATCCATTTACCCA TTCATAAATTTGTTTCACTGGATGATTGTTTATTCCTTCATTTCCTTCAT TAATTCTGTTAATTCGTCCATTCACCTATCCTTCTATCCATCTATCCATC CATTCGTCCGCTCACTCGCTCGACGTCTTTTCTTGTCTCTTGTCTTCAAT CTGTTTCACATTTCGTACTTTTCCTGACACCACCCTACAGAGTCTACGAC ATTCGAGTGCATCACCGCTACATCAAGGTCCACCCTGATCGCATCCGCGC GCTGAACAAGCTGGGCTTCATCTGGGCCGACGCGGGCGAGGCTAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig519:35179..35924+

>mRNA_H-paniculata_contig519.12533.1 ID=mRNA_H-paniculata_contig519.12533.1|Name=mRNA_H-paniculata_contig519.12533.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig519:35179..35924+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACCAGGTGTTCGAAGCTCTGGTGAGGTACAAGCAGGTCCACGGGAACTT
GCGTATTCCTGTGGCTTTTCGTGTGCCCTCTTACGATCCGTGGCCAGCGG
AGACGTGGGGGCTGGCGCTGGGGCAAAGAACCAGGTGTTCGAAGCTCTGG
TGAGGTACAAGCAGGTCCACGGGAACTTGCGTATTCCTGTGGCTTTTCGT
GTGCCCTCTTACGATCCGTGGCCAGCGGAGACGTGGGGGCTGGCGCTGGG
GCAAAGAGTCTACGACATTCGAGTGCATCACCGCTACATCAAGGTCCACC
CTGATCGCATCCGCGCGCTGAACAAGCTGGGCTTCATCTGGGCCGACGCG
GGCGAGGCTAGCAGTCTACGACATTCGAGTGCATCACCGCTACATCAAGG
TCCACCCTGATCGCATCCGCGCGCTGAACAAGCTGGGCTTCATCTGGGCC
GACGCGGGCGAGGCTAGC
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